Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

cran: DECIDE
DEComposition of Indirect and Direct Effects
Papers that mentioned: 71
cran: GPM
Gaussian Process Modeling of Multi-Response and Possibly Noisy Datasets
Papers that mentioned: 71
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
cran: tensorflow
R Interface to 'TensorFlow'
Papers that mentioned: 71
cran: ggcorrplot
Visualization of a Correlation Matrix using 'ggplot2'
Papers that mentioned: 71
pypi: GDAL
GDAL: Geospatial Data Abstraction Library
Papers that mentioned: 71
cran: DOPE
Drug Ontology Parsing Engine
Papers that mentioned: 71
pypi: tensorflow
TensorFlow is an open source machine learning framework for everyone.
Papers that mentioned: 71
cran: PAC
Partition-Assisted Clustering and Multiple Alignments of Networks
Papers that mentioned: 71
cran: WRS2
A Collection of Robust Statistical Methods
Papers that mentioned: 71
pypi: sim
simulate
Papers that mentioned: 71
pypi: pytorch

Papers that mentioned: 71
cran: rstanarm
Bayesian Applied Regression Modeling via Stan
Papers that mentioned: 70
cran: ER
Effect + Residual Modelling
Papers that mentioned: 70
pypi: Distiller
Automatic Keyword Extraction from Document Collections
Papers that mentioned: 70
pypi: Tcl
A coding language used for Graphical user interface
Papers that mentioned: 70
cran: rmcorr
Repeated Measures Correlation
Papers that mentioned: 70
cran: js
Tools for Working with JavaScript in R
Papers that mentioned: 69
cran: BMA
Bayesian Model Averaging
Papers that mentioned: 69
pypi: circ
A basic CLI to make mosaic vrts using ctx imagery
Papers that mentioned: 69
cran: ggthemes
Extra Themes, Scales and Geoms for 'ggplot2'
Papers that mentioned: 69
cran: COST
Copula-Based Semiparametric Models for Spatio-Temporal Data
Papers that mentioned: 69
pypi: js
Root directory for Fanstatic packages
Papers that mentioned: 69
cran: bootnet
Bootstrap Methods for Various Network Estimation Routines
Papers that mentioned: 69
pypi: searchlight
OpenStack Search Service
Papers that mentioned: 69
cran: scatterplot3d
3D Scatter Plot
Papers that mentioned: 69
cran: msm
Multi-State Markov and Hidden Markov Models in Continuous Time
Papers that mentioned: 69
pypi: msm
Mycroft Skills Manager
Papers that mentioned: 69
cran: OptimalCutpoints
Computing Optimal Cutpoints in Diagnostic Tests
Papers that mentioned: 68
pypi: CrossMap
Lift over genomics coordinates between assemblies
Papers that mentioned: 68
cran: missMDA
Handling Missing Values with Multivariate Data Analysis
Papers that mentioned: 68
pypi: javascript
Call and interop Node.js APIs with Python
Papers that mentioned: 68
pypi: scanpy
Single-Cell Analysis in Python.
Papers that mentioned: 68
pypi: xcms
calculated extended contact mode score provided the query and template protein-ligand structures
Papers that mentioned: 68
pypi: diamond
Smart data producer for graphite graphing package
Papers that mentioned: 68
bioconductor: xcms
LC-MS and GC-MS Data Analysis
Papers that mentioned: 68
pypi: software
...
Papers that mentioned: 67
cran: sna
Tools for Social Network Analysis
Papers that mentioned: 67
bioconductor: TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies
Papers that mentioned: 67
pypi: Mosaic
Mosaic poster composer
Papers that mentioned: 67
cran: mvtnorm
Multivariate Normal and t Distributions
Papers that mentioned: 67
pypi: GMM
This package provides a basic framework and supporting functionality for generating network structure network structure using graph motifs.
Papers that mentioned: 67
pypi: rma
Utilities to profile Redis RAM usage
Papers that mentioned: 67
pypi: SUPPA
A tool to study splicing across multiple conditions at high speed and accuracy.
Papers that mentioned: 67
pypi: sna
Search N Act
Papers that mentioned: 67
pypi: Sketch
Compute, store and operate on data sketches
Papers that mentioned: 66
cran: TAG
Transformed Additive Gaussian Processes
Papers that mentioned: 66
pypi: real

Papers that mentioned: 66
pypi: Jim
library to retrieve data from German railways
Papers that mentioned: 66
pypi: AMD
Advanced Data Science enabled Data extraction and control library for Arduino with accurate Data Visualizations !.
Papers that mentioned: 66
cran: LDheatmap
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Papers that mentioned: 66
cran: logistf
Firth's Bias-Reduced Logistic Regression
Papers that mentioned: 66
pypi: PhiSpy
Prophage finder using multiple metrics
Papers that mentioned: 66
cran: statnet
Software Tools for the Statistical Analysis of Network Data
Papers that mentioned: 66
cran: CMC
Cronbach-Mesbah Curve
Papers that mentioned: 66
pypi: PCIT
Predictive Conditional Independence Testing
Papers that mentioned: 66
cran: multcompView
Visualizations of Paired Comparisons
Papers that mentioned: 66
pypi: visual
Papers that mentioned: 66
pypi: AVISO
A library to handle altimetric data produced by AVISO
Papers that mentioned: 66
pypi: eddy
Static site generator with markdown support
Papers that mentioned: 66
cran: Grace
Graph-Constrained Estimation and Hypothesis Tests
Papers that mentioned: 65
pypi: phylogeny
An exploration of algorithms for phylogeny reconstruction.
Papers that mentioned: 65
cran: SMC
Papers that mentioned: 65
cran: lmodel2
Model II Regression
Papers that mentioned: 65
pypi: portal
Interact with Apple's Provisioning Portal, stay sane
Papers that mentioned: 65
cran: Clustering
Techniques for Evaluating Clustering
Papers that mentioned: 65
pypi: bash
Bash for Python
Papers that mentioned: 65
cran: QCA
Qualitative Comparative Analysis
Papers that mentioned: 65
pypi: Universal
Universal Competitive Programming Suite helps you work faster in programming competitions
Papers that mentioned: 65
pypi: mummichog
Pathway and network analysis for metabolomics data
Papers that mentioned: 65
cran: SMR
Externally Studentized Midrange Distribution
Papers that mentioned: 65
cran: segmented
Regression Models with Break-Points / Change-Points (with Possibly Random Effects) Estimation
Papers that mentioned: 64
cran: pcadapt
Fast Principal Component Analysis for Outlier Detection
Papers that mentioned: 64
pypi: net
A Powerfull Networking Package For Servers/LocalHosts ETC
Papers that mentioned: 64
cran: languageR
Analyzing Linguistic Data: A Practical Introduction to Statistics
Papers that mentioned: 64
cran: mlr
Machine Learning in R
Papers that mentioned: 64
pypi: segmented
segmented: A toolbox for segmented regression.
Papers that mentioned: 64
pypi: gmap
A package that prints 'Hello, World!'
Papers that mentioned: 64
cran: ggsignif
Significance Brackets for 'ggplot2'
Papers that mentioned: 64
pypi: 5
a test mod
Papers that mentioned: 64
cran: Cascade
Selection, Reverse-Engineering and Prediction in Cascade Networks
Papers that mentioned: 64
cran: Select
Determines Species Probabilities Based on Functional Traits
Papers that mentioned: 64
pypi: Catwalk
A way to view your models using TurboGears
Papers that mentioned: 64
cran: doBy
Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Papers that mentioned: 64
pypi: Origami
Lightweight bit packing for classes
Papers that mentioned: 64
cran: VIM
Visualization and Imputation of Missing Values
Papers that mentioned: 64
pypi: mlr
Linear regression utility with inference tests, residual analysis, outlier visualization, multicollinearity test, and other features
Papers that mentioned: 64
cran: BART
Bayesian Additive Regression Trees
Papers that mentioned: 63
bioconductor: microRNA
Data and functions for dealing with microRNAs
Papers that mentioned: 63
bioconductor: ACME
Algorithms for Calculating Microarray Enrichment (ACME)
Papers that mentioned: 63
pypi: Avatar
Avatar generator.
Papers that mentioned: 63
cran: AER
Applied Econometrics with R
Papers that mentioned: 63
pypi: Rhino
A microframework for building RESTful web services
Papers that mentioned: 63
pypi: Crossbow

Papers that mentioned: 63
cran: pamr
Pam: Prediction Analysis for Microarrays
Papers that mentioned: 63
bioconductor: impute
impute: Imputation for microarray data
Papers that mentioned: 63
pypi: impute
Gene imputation tools for founder populations.
Papers that mentioned: 63
pypi: plot
A matplotlib frontend executable using JSON file as user input
Papers that mentioned: 63
cran: ecospat
Spatial Ecology Miscellaneous Methods
Papers that mentioned: 62
cran: CORE
Cores of Recurrent Events
Papers that mentioned: 62