pypi: CrossMap | Projects | Ecosyste.ms: Papers

10.1038/s41597-019-0171-x

A multi-omics digital research object for the genetics of sleep regulation
Cited by: 8
Author(s): Jan M, Nastassia Gobet, Shanaz Diessler, Paul Franken, Ioannis Xénarios
Software Mentions: 17
Published: about 5 years ago

10.1186/s13059-020-02070-8

The regulatory landscape of early maize inflorescence development
Cited by: 28
Author(s): Rajiv Krishna Parvathaneni, Edoardo Bertolini, Md. Shamimuzzaman, Daniel Vera, Pei Yau Lung, Brian R. Rice, Jinfeng Zhang, Patrick J. Brown, Alexander E. Lipka, Hank W. Bass, Andrea L. Eveland
Software Mentions: 12
Published: over 4 years ago

10.1186/s12859-017-1651-7

Zipper plot: visualizing transcriptional activity of genomic regions
Cited by: 5
Author(s): Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh
Software Mentions: 9
Published: over 7 years ago

10.1186/s13059-018-1567-1

Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders
Cited by: 119
Author(s): Heath O’Brien, Eilís Hannon, Matthew Hill, Carolina Toste, Matthew J. Robertson, Joanne Morgan, Gemma M. McLaughlin, Cathryn M. Lewis, Leonard C Schalkwyk, Lynsey S. Hall, Antonio F. Pardiñas, Michael John Owen, Michael O’Donovan, Jonathan Mill, Nicholas John Bray
Software Mentions: 8
Published: about 6 years ago

10.7554/eLife.44036

Neuroblast-specific open chromatin allows the temporal transcription factor, Hunchback, to bind neuroblast-specific loci
Cited by: 38
Author(s): Sonia Sen, Sachin Chanchani, Tony D. Southall, Chris Q. Doe
Software Mentions: 8
Published: almost 6 years ago

10.7554/eLife.41673

Genetic effects on promoter usage are highly context-specific and contribute to complex traits
Cited by: 48
Author(s): Kaur Alasoo, Julia Rodrigues, John Danesh, Daniel F. Freitag, Dirk S. Paul, Daniel J Gaffney
Software Mentions: 8
Published: almost 6 years ago

10.1002/stem.2521

Zeb2 Regulates Cell Fate at the Exit from Epiblast State in Mouse Embryonic Stem Cells
Cited by: 37
Author(s): Agata Stryjewska, Ruben Dries, Tim Pieters, Griet Verstappen, Andrea Conidi, Kathleen Coddens, Annick Francis, Lieve Umans, Wilfred F. J. van IJcken, Geert Berx, Leo A. van Grunsven, Frank Grosveld, Steven Goossens, Jody J. Haigh, Danny Huylebroeck
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pgen.1009027

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD
Cited by: 5
Author(s): Christian Groß, Chiara Bortoluzzi, Dick de Ridder, Hendrik‐Jan Megens, Martien A. M. Groenen, Marcel J. T. Reinders, Mirte Bosse
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pbio.3000241

Islands of retroelements are major components of Drosophila centromeres
Cited by: 117
Author(s): Ching-Ho Chang, Ankita Chavan, Jason Palladino, Xiaolu Wei, Nuno M. C. Martins, Bryce Santinello, Chin-Chi Chen, Jelena Erceg, Brian J. Beliveau, Chao-ting Wu, Amanda M. Larracuente, Barbara G. Mellone
Software Mentions: 6
Published: over 5 years ago

10.15252/emmm.202012118

The mutational landscape of the <scp>SCAN</scp> ‐B real‐world primary breast cancer transcriptome
Cited by: 30
Author(s): Christian Brueffer, Sergii Gladchuk, Christof Winter, Johan Vallon‐Christersson, Cecilia Hegardt, Jari Häkkinen, Anthony George, Yilun Chen, Anna Ehinger, Christer Larsson, Niklas Loman, Martin Malmberg, Lisa Rydén, Åke Borg, Lao H. Saal
Software Mentions: 6
Published: about 4 years ago

10.1073/pnas.2005330117

Nuclear receptor REVERBα is a state-dependent regulator of liver energy metabolism
Cited by: 31
Author(s): Louise Hunter, Charlotte E Pelekanou, Antony Adamson, Polly Downton, Nichola J Barron, Thomas Cornfield, Toryn Poolman, Neil Humphreys, Peter Cunningham, Leanne Hodson, A. S. I. Loudon, Mudassar Iqbal, David A. Bechtold, David Ray
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-021-93297-3

Zfp57 inactivation illustrates the role of ICR methylation in imprinted gene expression during neural differentiation of mouse ESCs
Cited by: 7
Author(s): Basilia Acurzio, Ankit Verma, Alessia Polito, Carlo Giaccari, Francesco Cecere, Salvatore Fioriniello, Floriana Della Ragione, Annalisa Fico, Flavia Cerrato, Claudia Angelini, Robert Feil, Andrea Riccio
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-021-02283-5

Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase
Cited by: 24
Author(s): Vahid Akbari, Jean-Michel Garant, Kieran O’Neill, Pawan Pandoh, Richard A. Moore, Marco A. Marra, Martin Hirst, Steven J.M. Jones
Software Mentions: 5
Published: over 3 years ago

10.1534/g3.115.023655

Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution
Cited by: 145
Author(s): John W. Davey, Mathieu Chouteau, Sarah L. Barker, Luana S. Maroja, Simon W. Baxter, Fraser Simpson, Richard M. Merrill, Mathieu Joron, James Mallet, Kanchon K. Dasmahapatra, Chris D. Jiggins
Software Mentions: 4
Published: over 8 years ago

10.1155/2016/6741418

An Interoperability Platform Enabling Reuse of Electronic Health Records for Signal Verification Studies
Cited by: 10
Author(s): Mustafa Yuksel, Suat Gönül, Gökçe Banu Laleci Ertürkmen, Ali Anıl Sınacı, Paolo Invernizzi, Sara Facchinetti, Andrea Migliavacca, Tomas Bergvall, Kristof Depraetere, Jos De Roo
Software Mentions: 4
Published: almost 9 years ago

10.1074/mcp.M115.052860

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data
Cited by: 23
Author(s): Xiaojing Wang, Robbert J.C. Slebos, Matthew Chambers, David L. Tabb, Daniel C. Liebler, Bing Zhang
Software Mentions: 4
Published: over 8 years ago

10.1186/s12859-016-1279-z

Impact of post-alignment processing in variant discovery from whole exome data
Cited by: 28
Author(s): Shulan Tian, Huihuang Yan, Michael Kalmbach, Susan L. Slager
Software Mentions: 4
Published: about 8 years ago

10.1098/rsos.180903

Bracketing phenogenotypic limits of mammalian hybridization
Cited by: 26
Author(s): Yoland Savriama, Mia Valtonen, Juhana Kammonen, Pasi Rastas, Olli‐Pekka Smolander, Ari Löytynoja, Teemu J. Häkkinen, Ian J. Corfe, Sylvain Gerber, Isaac Salazar‐Ciudad, Lars Paulín, Liisa Holm, Ari Löytynoja, Petri Auvinen, Jukka Jernvall
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2020.595550

An Enhancer-Based Analysis Revealed a New Function of Androgen Receptor in Tumor Cell Immune Evasion
Cited by: 3
Author(s): Yuan Wang, Jiajia Li, Jingjing Li, Peipei Li, Li Wang, Lijun Di
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13073-021-00835-9

CADD-Splice—improving genome-wide variant effect prediction using deep learning-derived splice scores
Cited by: 294
Author(s): Philipp Rentzsch, Max Schubach, Jay Shendure, Martin Kircher
Software Mentions: 4
Published: over 3 years ago

10.1534/g3.120.401196

Selective Loss of Diversity in Doubled-Haploid Lines from European Maize Landraces
Cited by: 5
Author(s): Leo Zeitler, Jeffrey Ross‐Ibarra, Markus G Stetter
Software Mentions: 4
Published: over 4 years ago

10.1186/s13059-020-02053-9

Analysis of transcript-deleterious variants in Mendelian disorders: implications for RNA-based diagnostics
Cited by: 49
Author(s): Sateesh Maddirevula, Hiroyuki Kuwahara, Nour Ewida, Hanan E. Shamseldin, Nisha Patel, Fatema Alzahrani, Tarfa Al‐Sheddi, Eman Alobeid, Mona M. Alenazi, Hessa S. Alsaif, Maha Alqahtani, Maha AlAli, Hatoon Al Ali, Rana Helaby, Niema Ibrahim, Firdous Abdulwahab, Mais Hashem, Nadine Hanna, Dorota Monies, Nada Derar, Afaf Alsagheir, Amal Alhashem, Badr Alsaleem, Hamoud Alhebbi, Sami Wali, Ramzan Umarov, Xin Gao, Fowzan S. Alkuraya
Software Mentions: 3
Published: over 4 years ago

10.1016/j.csbj.2021.06.040

A survey of direct-to-consumer genotype data, and quality control tool (GenomePrep) for research
Cited by: 6
Author(s): Chang Lu, Bastian Greshake Tzovaras, Julian Gough
Software Mentions: 3
Published: almost 4 years ago

10.1093/database/bax020

Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation
Cited by: 52
Author(s): Magali Ruffier, Andreas Kähäri, Monika Komorowska, Stephen Keenan, Matthew R. Laird, Ian Longden, G Proctor, Steve Searle, Daniel M. Staines, Kieron Taylor, Alessandro Vullo, Andy Yates, Daniel R. Zerbino, Paul Flicek
Software Mentions: 3
Published: almost 8 years ago

10.7554/eLife.62548

Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees
Cited by: 11
Author(s): Briana E Mittleman, Sebastian Pott, Shane Warland, Kenneth Barr, Claudia Cuevas, Yoav Gilad
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13059-018-1422-4

Investigation into the role of the germline epigenome in the transmission of glucocorticoid-programmed effects across generations
Cited by: 18
Author(s): Jessy Cartier, Tom Smith, John P. Thomson, Catherine M. Rose, Batbayar Khulan, Andreas Heger, Richard R. Meehan, Amanda J. Drake
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-020-03805-x

smORFunction: a tool for predicting functions of small open reading frames and microproteins
Cited by: 10
Author(s): Xiangwen Ji, Chunmei Cui, Qinghua Cui
Software Mentions: 3
Published: about 4 years ago

10.1186/s13073-019-0694-y

A KHDC3L mutation resulting in recurrent hydatidiform mole causes genome-wide DNA methylation loss in oocytes and persistent imprinting defects post-fertilisation
Cited by: 41
Author(s): Hannah Demond, Zahra Anvar, Bahia Namavar Jahromi, Ángela Sparago, Ankit Verma, Maryam Davari, Luciano Calzari, Silvia Russo, Mojgan Akbarzadeh‐Jahromi, David Gabriel Monk, Simon Andrews, Andrea Riccio, Gavin Kelsey
Software Mentions: 3
Published: almost 5 years ago

10.1534/genetics.118.301674

MRG-1/MRG15 Is a Barrier for Germ Cell to Neuron Reprogramming in Caenorhabditis elegans
Cited by: 30
Author(s): Martina Hajdůšková, Gülkız Baytek, Ena Kolundžić, Alexander Gosdschan, Marlon Kazmierczak, Andreas Ofenbauer, Maria Lena Beato del Rosal, Sergej Herzog, Nida Fatima, Philipp Mertins, Stefanie Müthel, Baris Tursun
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-95447-z

Understanding the impact of SNPs associated with autism spectrum disorder on biological pathways in the human fetal and adult cortex
Cited by: 11
Author(s): Evgeniia Golovina, Tayaza Fadason, Thierry Lints, Caroline Walker, Mark H. Vickers, Justin M. O’Sullivan
Software Mentions: 3
Published: over 3 years ago

10.1093/molbev/msaa099

Extensive Ethnolinguistic Diversity in Vietnam Reflects Multiple Sources of Genetic Diversity
Cited by: 61
Author(s): Dang Liu, Nguyễn Thùy Dương, Nguyễn Đăng Tôn, Nguyễn Văn Phòng, Brigitte Pakendorf, Nông Văn Hải, Mark Stoneking
Software Mentions: 3
Published: over 4 years ago

10.1534/genetics.118.301765

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of theDrosophila melanogasterY Chromosome
Cited by: 88
Author(s): Ching-Ho Chang, Amanda M. Larracuente
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0118453

Hierarchical Clustering of Breast Cancer Methylomes Revealed Differentially Methylated and Expressed Breast Cancer Genes
Cited by: 25
Author(s): I-Hsuan Lin, Dow-Tien Chen, Yi-Feng Chang, Yu-Ling Lee, Chia-Hsin Su, Ching Wei Cheng, Yi-Chien Tsai, Swee-Chuan Ng, Hsiao-Tan Chen, Mei‐Chen Lee, Hongwei Chen, Shih-Hui Suen, Yu‐Cheng Chen, Tze-Tze Liu, Chuan-Hsiung Chang, Ming Hsu
Software Mentions: 3
Published: over 9 years ago

10.1016/j.cell.2021.07.013

The genomic history of the Middle East
Cited by: 22
Author(s): Mohamed A. Almarri, Marc Haber, Reem A. Lootah, Pille Hallast, Saeed Al Turki, Hilary C. Martin, Yali Xue, Chris Tyler‐Smith
Software Mentions: 3
Published: about 3 years ago

10.3390/ijms21239177

A Long-Read Sequencing Approach for Direct Haplotype Phasing in Clinical Settings
Cited by: 13
Author(s): Simone Maestri, Maria Giovanna Maturo, Emanuela Cosentino, Luca Marcolungo, Barbara Iadarola, Elisabetta Fortunati, Marzia Rossato, Massimo Delledonne
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12915-020-00792-6

Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human
Cited by: 27
Author(s): Shuli Liu, Ying Yu, Shengli Zhang, John B. Cole, Albert Tenesa, Ting Wang, T. G. McDaneld, Li Ma, George E. Liu, Lingzhao Fang
Software Mentions: 2
Published: over 4 years ago

10.1093/bib/bbab069

Converting single nucleotide variants between genome builds: from cautionary tale to solution
Cited by: 9
Author(s): Cathal Ormond, Niamh Ryan, Aiden Corvin, Elizabeth A. Heron
Software Mentions: 2
Published: over 3 years ago

10.1093/molbev/msx061

Both maintenance and avoidance of RNA-binding protein interactions constrain coding sequence evolution
Cited by: 7
Author(s): Rosina Savisaar, Laurence D. Hurst
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0246538

Polygenic risk score validation using Korean genomes of 265 early-onset acute myocardial infarction patients and 636 healthy controls
Cited by: 5
Author(s): Youngjune Bhak, Yeonsu Jeon, Sungwon Jeon, Changhan Yoon, Min Kim, Asta Blažytė, Yeonkyung Kim, Younghui Kang, Changjae Kim, Sang Yeub Lee, Jang‐Whan Bae, Weon Kim, Yeo Jin Kim, Jungae Shim, Nayeong Kim, Sung Chun, Byoung-Chul Kim, Semin Lee, Jong Bhak, Eun‐Seok Shin
Software Mentions: 2
Published: almost 4 years ago

10.3390/epigenomes4040024

Simplified MethylRAD Sequencing to Detect Changes in DNA Methylation at Enhancer Elements in Differentiating Embryonic Stem Cells
Cited by: 3
Author(s): Debapriya Saha, Allison B Norvil, Nadia A. Lanman, Humaira Gowher
Software Mentions: 2
Published: about 4 years ago

10.12688/f1000research.14148.2

segment_liftover : a Python tool to convert segments between genome assemblies
Cited by: 27
Author(s): Bo Gao, Qingyao Huang, Michael Baudis
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2019.02964

Exome Sequencing Identifies Susceptibility Loci for Sarcoidosis Prognosis
Cited by: 12
Author(s): Elisa Lahtela, Matti Kankainen, Juha Sinisalo, Olof Selroos, Marja-Liisa Lokki
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2020.00590

The Genetic Regulation of Alternative Splicing in Populus deltoides
Cited by: 5
Author(s): Jerald D. Noble, Kelly M. Balmant, Christopher Dervinis, Gustavo de los Campos, M. D. V. de Resende, Matias Kirst, W. Brad Barbazuk
Software Mentions: 2
Published: over 4 years ago

10.1186/s12711-020-0528-9

pCADD: SNV prioritisation in Sus scrofa
Cited by: 16
Author(s): Christian Groß, Martijn F.L. Derks, Hendrik Jan Megens, Mirte Bosse, M.A.M. Groenen, Marcel J. T. Reinders, Dick de Ridder
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13059-019-1683-6

Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean
Cited by: 13
Author(s): Jinyu Wang, Xianran Li, Kyung Do Kim, Michael J. Scanlon, Scott A. Jackson, Nathan M. Springer, Jianming Yu
Software Mentions: 2
Published: over 5 years ago

10.1186/s13059-019-1728-x

Spatial chromatin architecture alteration by structural variations in human genomes at the population scale
Cited by: 33
Author(s): Michał Sadowski, Agnieszka Kraft, Przemysław Szałaj, Michał Wlasnowolski, Zhonghui Tang, Yijun Ruan, Dariusz Plewczynski
Software Mentions: 2
Published: over 5 years ago

10.1186/s13059-020-02101-4

Polymorphic mobile element insertions contribute to gene expression and alternative splicing in human tissues
Cited by: 19
Author(s): Xiaolong Cao, Yeting Zhang, Lindsay M. Payer, Hannah Lords, Jared P. Steranka, Kathleen H. Burns, Jinchuan Xing
Software Mentions: 2
Published: over 4 years ago

10.1093/gbe/evab183

nf-LO: A Scalable, Containerized Workflow for Genome-to-Genome Lift Over
Cited by: 7
Author(s): Andrea Talenti, James Prendergast
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1007114

CAGE-seq analysis of Epstein-Barr virus lytic gene transcription: 3 kinetic classes from 2 mechanisms
Cited by: 33
Author(s): Reza Djavadian, Mitchell Hayes, Eric Johannsen
Software Mentions: 2
Published: over 6 years ago

10.21203/rs.3.rs-153628/v1

SARS-CoV-2 infects blood monocytes to activate NLRP3 and AIM2 inflammasomes, pyroptosis and cytokine release
Cited by: 31
Author(s): Caroline Junqueira, Ângela C. Crespo, Shahin Ranjbar, Mercedes Lewandrowski, Jacob Ingber, Luna Barrôco de Lacerda, Blair A. Parry, Sagi Ravid, Sarah A. Clark, Felicia Ho, Setu M. Vora, Valerie Leger, Caroline Beakes, Justin D. Margolin, Nicole Russell, Kyle R. Kays, Lee Gehrke, Upasana Das Adhikari, Lauren A. Henderson, Erin Janssen, Deborah Kwon, Chris Sander, Jonathan Abraham, Michael R. Filbin, Marcia B. Goldberg, Hao Wu, Gautam Mehta, Steven Bell, Anne E. Goldfeld, Judy Lieberman
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.27860

Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins
Cited by: 94
Author(s): Sondos Samandi, Annie Roy, Vivian Delcourt, Jean-François Lucier, Jules Gagnon, Maxime C. Beaudoin, Benoît Vanderperre, Marc-André Breton, Julie Motard, Jean-François Jacques, Mylène Brunelle, Isabelle Gagnon‐Arsenault, Isabelle Fournier, Aïda Ouangraoua, Darel J. Hunting, Alan A. Cohen, Christian R. Landry, Michelle S. Scott, Xavier Roucou
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.25730

Arid1b haploinsufficient mice reveal neuropsychiatric phenotypes and reversible causes of growth impairment
Cited by: 72
Author(s): Cemre Celen, Jen‐Chieh Chuang, Xin Luo, Nadine Nijem, Angela K. Walker, Fei Chen, Shuyuan Zhang, Angie Y. Chung, Liem H. Nguyen, Ibrahim Nassour, Albert Budhipramono, Xuxu Sun, Levinus A. Bok, Meriel McEntagart, Evelien Gevers, Shari G. Birnbaum, Amelia J. Eisch, Craig M. Powell, Woo-Ping Ge, Gijs W.E. Santen, Maria H. Chahrour, Min Zhu
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2018.01819

In Silico Analysis of the Minor Histocompatibility Antigen Landscape Based on the 1000 Genomes Project
Cited by: 15
Author(s): N. A. Bykova, Dmitry B. Malko, Grigory A. Efimov
Software Mentions: 1
Published: over 6 years ago

10.1093/database/bax028

GeneHancer: genome-wide integration of enhancers and target genes in GeneCards
Cited by: 739
Author(s): Simon Fishilevich, Ron Nudel, Noa Rappaport, Rotem Hadar, Inbar Plaschkes, Tsippi Iny Stein, Naomi Rosen, Asher Kohn, Michal Twik, Marilyn Safran, Doron Lancet, Dana Cohen
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12859-018-2337-5

Predicting variant deleteriousness in non-human species: applying the CADD approach in mouse
Cited by: 9
Author(s): Christian Groß, Dick de Ridder, Marcel J. T. Reinders
Software Mentions: 1
Published: about 6 years ago

10.1016/j.celrep.2021.108778

Cytoplasmic cleavage of IMPA1 3′ UTR is necessary for maintaining axon integrity
Cited by: 17
Author(s): Catia Andreassi, Raphaëlle Luisier, Hamish Crerar, Marousa Darsinou, Sasja Blokzijl-Franke, Tchern Lenn, Nicholas M. Luscombe, Giovanni Cuda, Marco Gaspari, Adolfo Saiardi, Antonella Riccio
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-34364-0

Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken
Cited by: 25
Author(s): Gabriel Costa Monteiro Moreira, Clarissa Boschiero, Aline Silva Mello Cesar, James M. Reecy, Thaís Fernanda Godoy, Fábio Pértille, Mônica Corrêa Ledur, Ana Silvia Alves Meira Tavares Moura, Dorian J. Garrick
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-76425-3

ClassifyCNV: a tool for clinical annotation of copy-number variants
Cited by: 31
Author(s): Tatiana A. Gurbich, Valery Ilinsky
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pgen.1007752

BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2
Cited by: 137
Author(s): Melissa Cline, Rachel G. Liao, Michael T. Parsons, Benedict Paten, Faisal Alquaddoomi, Antonis C. Antoniou, Samantha Baxter, Larry Brody, Robert Cook-Deegan, Amy Coffin, Fergus J. Couch, Brian Craft, R. Currie, Chloe C. Dlott, Lena Dolman, Johan T. den Dunnen, Stephanie O. M. Dyke, Susan M. Domchek, Douglas F. Easton, Zachary Fischmann, William D. Foulkes, Judy E. Garber, David E. Goldgar, Mary Goldman, Peter Goodhand, Seamus C. Harrison, David Haussler, Kazuto Kato, Bartha Maria Knoppers, Charles Markello, Robert L. Nussbaum, Kenneth Offit, Sharon E. Plon, Jem Rashbass, Heidi L. Rehm, Mark E. Robson, Wendy S. Rubinstein, Dominique Stoppa‐Lyonnet, Sean V. Tavtigian, Adrian Thorogood, Can Zhang, Marc Zimmermann, John Burn, Stephen J. Chanock, Gunnar Rätsch, Amanda B. Spurdle
Software Mentions: 1
Published: almost 6 years ago

10.1002/mds.28488

The Parkinson's Disease <scp>DNA</scp> Variant Browser
Cited by: 10
Author(s): Jonggeol J. Kim, Mary B. Makarious, Sara Bandrés‐Ciga, J. Raphael Gibbs, Jinhui Ding, Dena G. Hernandez, Janet Brooks, Francis P. Grenn, Hirotaka Iwaki, Andrew B. Singleton, Mike A. Nalls, Cornelis Blauwendraat
Software Mentions: 1
Published: almost 4 years ago

10.1093/bioinformatics/btz218

GenomeWarp: an alignment-based variant coordinate transformation
Cited by: 2
Author(s): Cory Y. McLean, Yeongwoo Hwang, Ryan Poplin, Mark A. DePristo
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-021-01258-1

A unique missense variant in the E1A-binding protein P400 gene is implicated in schizophrenia by whole-exome sequencing and mutant mouse models
Cited by: 0
Author(s): Yoshiro Morimoto, Shinji Ono, Shintaro Yoshida, Hiroyuki Mishima, Akira Kinoshita, Takeshi Tanaka, Yoshihiro Komohara, Naohiro Kurotaki, Tatsuya Kishino, Yuji Okazaki, Hiroki Ozawa, Koh-ichiro Yoshiura, Akira Imamura
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-021-07983-7

DNA damage repair system in C57BL/6 J mice is evolutionarily stable
Cited by: 1
Author(s): Xiaoyu Wang, San Ming Wang
Software Mentions: 1
Published: about 3 years ago

10.1186/s12859-019-2620-0

Similarities and differences between variants called with human reference genome HG19 or HG38
Cited by: 33
Author(s): Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huasheng Hong
Software Mentions: 1
Published: over 5 years ago

10.1534/genetics.120.303025

Dominance Effects and Functional Enrichments Improve Prediction of Agronomic Traits in Hybrid Maize
Cited by: 33
Author(s): Guillaume P. Ramstein, Sara Larsson, Jason P. Cook, Jode W. Edwards, Elhan S. Ersoz, Sherry Flint-García, C Gardner, James B. Holland, Aaron J. Lorenz, Michael D. McMullen, Mark J. Millard, Torbert Rocheford, Mitchell R. Tuinstra, Peter J. Bradbury, Edward S. Buckler, M. Cinta Romay
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2019.00033

Spring Is Coming: Genetic Analyses of the Bud Break Date Locus Reveal Candidate Genes From the Cold Perception Pathway to Dormancy Release in Apple (Malus × domestica Borkh.)
Cited by: 25
Author(s): Yohanna Evelyn Miotto, Carolina Tessele, A. B. C. Czermainski, Diogo Denardi Porto, Vítor da Silveira Falavigna, Tiago Sartor, Amanda Malvessi Cattani, Carla Andréa Delatorre, Sérgio Amorim de Alencar, Orzenil B. Silva‐Junior, Roberto Coiti Togawa, Marcos Mota do Carmo Costa, George J. Pappas, Priscila Grynberg, P. R. D. de Oliveira, Marcus Vinícius Kvitschal, Frederico Denardi, Vanessa Buffon, L. F. Revers
Software Mentions: 1
Published: over 5 years ago

10.1093/gigascience/gix038

Alignment of 1000 Genomes Project reads to reference assembly GRCh38
Cited by: 46
Author(s): Xiangqun Zheng-Bradley, Ian Streeter, Susan Fairley, David Richardson, Laura Clarke, Paul Flicek
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-019-6040-3

Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens
Cited by: 13
Author(s): Gabriel Costa Monteiro Moreira, Mayara Salvian, Clarissa Boschiero, Aline Silva Mello Cesar, James M. Reecy, Thaís Fernanda Godoy, Mônica Corrêa Ledur, Dorian J. Garrick, Gérson Barreto Mourão
Software Mentions: 1
Published: over 5 years ago

Projects: pypi: CrossMap

Papers Mentioning CrossMap 68