Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-017-1651-7

https://doi.org/10.1186/s12859-017-1651-7

Zipper plot: visualizing transcriptional activity of genomic regions

Cited by: 5
Author(s): Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh
Published: over 7 years ago

Software Mentions 9

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: gridExtra

Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298

cran: knitr

A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157

cran: R.utils

Various Programming Utilities
Papers that mentioned: 13

cran: SAM

Sparse Additive Modelling
Papers that mentioned: 4,566

pypi: CAGE

A generic and fairly complete cellular automata simulation engine.
Papers that mentioned: 101

pypi: CrossMap

Lift over genomics coordinates between assemblies
Papers that mentioned: 68

pypi: grid

Volumetric data module
Papers that mentioned: 137

pypi: table

Two-dimensional tables backed by Numpy with named rows and columns.
Papers that mentioned: 48