Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.44036

https://doi.org/10.7554/eLife.44036

Neuroblast-specific open chromatin allows the temporal transcription factor, Hunchback, to bind neuroblast-specific loci

Cited by: 38
Author(s): Sonia Sen, Sachin Chanchani, Tony D. Southall, Chris Q. Doe
Published: almost 6 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
pypi: awk
A library to provide advanced awk-like functionalities for file manipulation in Python.
Papers that mentioned: 80
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: CrossMap
Lift over genomics coordinates between assemblies
Papers that mentioned: 68
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203