Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41597-019-0171-x

https://doi.org/10.1038/s41597-019-0171-x

A multi-omics digital research object for the genetics of sleep regulation

Cited by: 8
Author(s): Jan M, Nastassia Gobet, Shanaz Diessler, Paul Franken, Ioannis Xénarios
Published: about 5 years ago

Software Mentions 17

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: SANTA
Spatial Analysis of Network Associations
Papers that mentioned: 7
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: bnlearn
Bayesian Network Structure Learning, Parameter Learning and Inference
Papers that mentioned: 113
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: rmarkdown
Dynamic Documents for R
Papers that mentioned: 38
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: bnlearn
Python package for learning the graphical structure of Bayesian networks, parameter learning, inference and sampling methods.
Papers that mentioned: 113
pypi: CrossMap
Lift over genomics coordinates between assemblies
Papers that mentioned: 68
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: hiveplot
Hive plots in Python!
Papers that mentioned: 1
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: linux

Papers that mentioned: 450