Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41597-019-0171-x

https://doi.org/10.1038/s41597-019-0171-x

Cited by: 8
Author(s): Jan M, Nastassia Gobet, Shanaz Diessler, Paul Franken, Ioannis Xénarios
Published: over 4 years ago

Software Mentions 17

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: SANTA

Spatial Analysis of Network Associations
Papers that mentioned: 7

bioconductor: topGO

Enrichment Analysis for Gene Ontology
Papers that mentioned: 652

cran: bnlearn

Bayesian Network Structure Learning, Parameter Learning and Inference
Papers that mentioned: 113

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: knitr

A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157

cran: rmarkdown

Dynamic Documents for R
Papers that mentioned: 38

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: bnlearn

Python package for learning the graphical structure of Bayesian networks, parameter learning, inference and sampling methods.
Papers that mentioned: 113

pypi: CrossMap

Lift over genomics coordinates between assemblies
Papers that mentioned: 68

pypi: grid

Volumetric data module
Papers that mentioned: 137

pypi: hiveplot

Hive plots in Python!
Papers that mentioned: 1

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555

pypi: linux

Papers that mentioned: 450