Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.41673

https://doi.org/10.7554/eLife.41673

Genetic effects on promoter usage are highly context-specific and contribute to complex traits

Cited by: 48
Author(s): Kaur Alasoo, Julia Rodrigues, John Danesh, Daniel F. Freitag, Dirk S. Paul, Daniel J Gaffney
Published: almost 6 years ago

Software Mentions 8

bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: coloc
Colocalisation Tests of Two Genetic Traits
Papers that mentioned: 49
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
pypi: coloc
the COLOC method by Giambartolomei et al.
Papers that mentioned: 49
pypi: CrossMap
Lift over genomics coordinates between assemblies
Papers that mentioned: 68