pypi: Mosaic | Projects | Ecosyste.ms: Papers

10.3390/microorganisms8091367

Lifestyle, Lineage, and Geographical Origin Influence Temperature-Dependent Phenotypic Variation across Yeast Strains during Wine Fermentation
Cited by: 4
Author(s): Rebecca C. Deed, Lisa I. Pilkington
Software Mentions: 6
Published: about 4 years ago

10.1186/s40537-021-00443-9

An analysis of the graph processing landscape
Cited by: 8
Author(s): Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.28728

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data
Cited by: 439
Author(s): Pengcheng Zhou, Shanna L. Resendez, Jose Rodríguez-Romaguera, Jessica C. Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A. Pnevmatikakis, Garret D. Stuber, René Hen, Mazen A. Kheirbek, Bernardo L. Sabatini, Robert E. Kass, Liam Paninski
Software Mentions: 3
Published: over 6 years ago

10.1038/s41597-019-0044-3

Harmonising topographic & remotely sensed datasets, a reference dataset for shoreline and beach change analysis
Cited by: 16
Author(s): John Pollard, Susan Brooks, Tom Spencer
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-018-0495-3

Genomic variation and biogeography of Antarctic haloarchaea
Cited by: 31
Author(s): Bernhard Tschitschko, Susanne Erdmann, Matthew Z. DeMaere, Simon Roux, Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Sarah Brazendale, Alyce M. Hancock, Emiley A. Eloe‐Fadrosh, Ricardo Cavicchioli
Software Mentions: 3
Published: over 6 years ago

10.1038/s41380-018-0089-2

Stress peptides sensitize fear circuitry to promote passive coping
Cited by: 33
Author(s): Pinelopi Pliota, Vincent Böhm, Florian Grössl, Johannes Griessner, Ornella Valenti, Klaus Kraitsy, Joanna Kaczanowska, Manuel Pasieka, Thomas Lendl, Jan M. Deussing, Wulf Haubensak
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2164-15-737

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt
Cited by: 143
Author(s): Egon A. Ozer, Jonathan P. Allen, Alan R. Hauser
Software Mentions: 3
Published: almost 11 years ago

10.1177/23813377211027556

Wag the Dog: A Digital Literacies Narrative
Cited by: 4
Author(s): Elizabeth A. Baker
Software Mentions: 3
Published: over 3 years ago

10.3389/fnins.2019.00176

In vivo Calcium Imaging Reveals That Cortisol Treatment Reduces the Number of Place Cells in Thy1-GCaMP6f Transgenic Mice
Cited by: 8
Author(s): Tim Indersmitten, Michael J Schachter, Stephanie Young, Natalie Welty, Stephani Otte, Jonathan J. Nassi, Timothy W. Lovenberg, Pascal Bonaventure, Ryan M. Wyatt
Software Mentions: 2
Published: over 5 years ago

10.6028/jres.101.025

The Protein Data Bank: Current status and future challenges
Cited by: 23
Author(s): Enrique E. Abola, N.O. Manning, Jaime Prilusky, David Stampf, Joel L. Sussman
Software Mentions: 2
Published: over 28 years ago

10.1007/s00216-012-6313-z

Near-infrared (NIR) hyperspectral imaging and multivariate image analysis to study growth characteristics and differences between species and strains of members of the genus Fusarium
Cited by: 45
Author(s): Paul J. Williams, Paul Geladi, T. J. Britz, Marena Manley
Software Mentions: 2
Published: about 12 years ago

10.3389/fpls.2012.00241

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)
Cited by: 10
Author(s): Ruth Grene, Curtis Klumas, Haktan Suren, Kuan Yang, Eva Collakova, Elijah Myers, Lenwood S. Heath, Jason A. Holliday
Software Mentions: 2
Published: almost 13 years ago

10.1128/JB.00253-20

Development of a New Bead Movement-Based Computational Framework Shows that Bacterial Amyloid Curli Reduces Bead Mobility in Biofilms
Cited by: 1
Author(s): Khushi Malhotra, Thérèse Hunter, Blaise Henry, Y. Ishmail, P. Gaddameedi, Sarah A. Tursi, Çağla Tükel, Michael E. Hoffer, Bettina A. Buttaro, Gillian Queisser
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0237432

Enabling and constraining successful reablement: Individual and neighbourhood factors
Cited by: 3
Author(s): Christopher Justin Jacobi, Darren Thiel, Nick Allum
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0018783

Exploring Metabolic Pathway Reconstruction and Genome-Wide Expression Profiling in Lactobacillus reuteri to Define Functional Probiotic Features
Cited by: 154
Author(s): Delphine M. Saulnier, F.D. Santos, Stefan Roos, Toni Ann Mistretta, Jennifer K. Spinler, Douwe Molenaar, Bas Teusink, James Versalovic
Software Mentions: 2
Published: over 13 years ago

10.1038/s41597-020-00748-z

A continental-scale soil evaporation dataset derived from Soil Moisture Active Passive satellite drying rates
Cited by: 5
Author(s): Ronnie Abolafia‐Rosenzweig, Andrew M. Badger, E. E. Small, Ben Livneh
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41380-019-0369-5

A hypothalamus-habenula circuit controls aversion
Cited by: 101
Author(s): Iakovos Lazaridis, Ourania Tzortzi, Moritz Weglage, Antje Märtin, Yang Xuan, Marc A. Parent, Yvonne Johansson, János Fuzik, Daniel Fürth, Lief E. Fenno, Charu Ramakrishnan, Gilad Silberberg, Karl Deisseroth, Marie Carlén, Konstantinos Meletis
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.60336

The amygdala instructs insular feedback for affective learning
Cited by: 14
Author(s): Dominic Kargl, Joanna Kaczanowska, Sophia Ulonska, Florian Groessl, Łukasz Piszczek, Jelena Lazović, Katja Buehler, Wulf Haubensak
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/9960199

LCC-Net: A Lightweight Cross-Consistency Network for Semisupervised Cardiac MR Image Segmentation
Cited by: 1
Author(s): Lai Song, Jiajin Yi, Jialin Peng
Software Mentions: 1
Published: over 3 years ago

10.1007/s00787-019-01445-y

Health care consumption among adolescent girls prior to diagnoses of sexual abuse, a case–control study in the Stockholm Region
Cited by: 4
Author(s): Gita Rajan, Gunnar Ljunggren, Per Wändell, Lars Wahlström, Carl Göran Svedin, Axel C. Carlsson
Software Mentions: 1
Published: almost 5 years ago

10.3389/fchem.2019.00528

Single Molecule Study of Hydrogen Bond Interactions Between Single Oligonucleotide and Aerolysin Sensing Interface
Cited by: 18
Author(s): Meng‐Yin Li, Yaqian Wang, Yao Lu, Yi‐Lun Ying, Yi‐Tao Long
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.728936

PopCover-2.0. Improved Selection of Peptide Sets With Optimal HLA and Pathogen Diversity Coverage
Cited by: 5
Author(s): Jonas Birkelund Nilsson, Alba Grifoni, Alison Tarke, Alessandro Sette, Morten Nielsen
Software Mentions: 1
Published: about 3 years ago

10.3389/fncir.2014.00027

Delta-subunit-containing GABAA-receptors mediate tonic inhibition in paracapsular cells of the mouse amygdala
Cited by: 19
Author(s): Anne Marowsky, Kaspar E. Vogt
Software Mentions: 1
Published: over 10 years ago

10.3389/fnins.2018.00958

CAVE: An Open-Source Tool for Combined Analysis of Head-Mounted Calcium Imaging and Behavior in MATLAB
Cited by: 11
Author(s): Jennifer Tegtmeier, Marcel Brosch, Kathrin Janitzky, Hans‐Jochen Heinze, Frank W. Ohl, M. Lippert
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnins.2018.00496

Simultaneous Optogenetics and Cellular Resolution Calcium Imaging During Active Behavior Using a Miniaturized Microscope
Cited by: 67
Author(s): Alice M. Stamatakis, Mike Schachter, Srishti Gulati, Kevin T. Zitelli, Sam Malanowski, Arash Tajik, Christopher Fritz, Mark O. Trulson, Stephani Otte
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2021.646468

Mapping Network Activity in Sleep
Cited by: 4
Author(s): Priyattam J. Shiromani, Carlos Blanco-Centurión, Aurelio Vidal-Ortiz
Software Mentions: 1
Published: over 3 years ago

10.1145/3025453.3025747

When Personal Tracking Becomes Social
Cited by: 118
Author(s): Chia-Fang Chung, Elena Agapie, Jessica Schroeder, Sonali R. Mishra, James Fogarty, Sean A. Munson
Software Mentions: 1
Published: over 7 years ago

10.1016/j.pneurobio.2020.101771

Role of spontaneous and sensory orexin network dynamics in rapid locomotion initiation
Cited by: 42
Author(s): Mahesh Karnani, Cornelia Schöne, Edward F. Bracey, Joaquín González, Paulius Viskaitis, Han-Tao Li, Antoine Adamantidis, Denis Burdakov
Software Mentions: 1
Published: over 4 years ago

10.1016/j.xpro.2020.100238

Calcium imaging of adult-born neurons in freely moving mice
Cited by: 6
Author(s): Alvaro Carrier-Ruiz, Yuki Sugaya, Deependra Kumar, Pablo Vergara, Iyo Koyanagi, Sakthivel Srinivasan, Toshie Naoi, Masanobu Kano, Masanori Sakaguchi
Software Mentions: 1
Published: over 3 years ago

10.1038/sdata.2018.115

Seamless bathymetry and topography datasets for New South Wales, Australia
Cited by: 12
Author(s): Kaya M. Wilson, Hannah E. Power
Software Mentions: 1
Published: over 6 years ago

10.1038/srep34447

A new design for a green calcium indicator with a smaller size and a reduced number of calcium-binding sites
Cited by: 33
Author(s): Natalia V. Barykina, Fedor V. Subach, Danila A. Doronin, Vladimir P. Sotskov, M. A. Roshchina, Tatiana A. Kunitsyna, Aleksey Malyshev, Ivan V. Smirnov, А. М. Азиева, Ilya S. Sokolov, Kiryl D. Piatkevich, Mikhail Burtsev, Anna M. Varizhuk, Galina E. Pozmogova, Konstantin V. Anokhin, Grigori Enikolopov
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-14166-6

Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm
Cited by: 11
Author(s): Yuval Yifat, Nishant Sule, Yihan Lin, Norbert F. Scherer
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-28486-8

Multiple liver insults synergize to accelerate experimental hepatocellular carcinoma
Cited by: 22
Author(s): James M. Henderson, Natasa Polak, Jinbiao Chen, Ben Roediger, Wolfgang Weninger, James G. Kench, Geoffrey W. McCaughan, Hui Emma Zhang, Mark D. Gorrell
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-62089-6

Action representation in the mouse parieto-frontal network
Cited by: 13
Author(s): Tuçe Tombaz, Benjamin Dunn, Karoline Hovde, Ryan John Cubero, Bartul Mimica, Pranav Mamidanna, Yasser Roudi, Jonathan R. Whitlock
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-91995-6

Toxicity evaluation of ConvitVax breast cancer immunotherapy
Cited by: 0
Author(s): María A Duarte C, Jeismar M Carballo O, Yetsenia María De Gouveia, A. Novo Garcia, Diana Carolina Miranda Ruiz, Teresa Gledhill, Eglys González-Marcano, Ana Federica Convit
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-93721-8

Dentate granule cells encode auditory decisions after reinforcement learning in rats
Cited by: 4
Author(s): Jia Shen, Pan-tong Yao, Shaoyu Ge, Qiaojie Xiong
Software Mentions: 1
Published: over 3 years ago

10.3390/s150306560

New Calibration Method Using Low Cost MEM IMUs to Verify the Performance of UAV-Borne MMS Payloads
Cited by: 29
Author(s): Kai-Wei Chiang, Meng Lun Tsai, El Sheimy Naser, Ayman Habib, Chih‐Ping Chu
Software Mentions: 1
Published: over 9 years ago

10.3390/s20154260

A Robust Fabric Defect Detection Method Based on Improved RefineDet
Cited by: 25
Author(s): Huosheng Xie, Zesen Wu
Software Mentions: 1
Published: over 4 years ago

10.3390/s21082580

Low-Cost Prototype to Automate the 3D Digitization of Pieces: An Application Example and Comparison
Cited by: 5
Author(s): Ramón González-Merino, Elena Sánchez‐López, Pablo E. Romero, Jesús Rodero, Rafael Enrique Hidalgo Fernández
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.00683-18

Virus Control of Trafficking from Sorting Endosomes
Cited by: 18
Author(s): Sebastian Zeltzer, Carol A. Zeltzer, Suzu Igarashi, Jean M. Wilson, Julie G. Donaldson, Felicia Goodrum
Software Mentions: 1
Published: about 6 years ago

10.1186/s12939-018-0801-5

Caring for pregnant refugee women in a turbulent policy landscape: perspectives of health care professionals in Calgary, Alberta
Cited by: 25
Author(s): Anika Winn, Erin Hetherington, Suzanne Tough
Software Mentions: 1
Published: over 6 years ago

10.1186/1476-072X-10-42

Including the urban heat island in spatial heat health risk assessment strategies: a case study for Birmingham, UK
Cited by: 236
Author(s): Charlie J. Tomlinson, Lee Chapman, John E. Thornes, Chris Baker
Software Mentions: 1
Published: almost 14 years ago

10.1111/jmi.12057

The Gray Institute ‘open’ high‐content, fluorescence lifetime microscopes
Cited by: 28
Author(s): Paul R. Barber, Iain D. C. Tullis, Glenn Palen Pierce, Robert G. Newman, John Prentice, Mark Rowley, Daniel R. Matthews, Simon Ameer-Beg, B. Vojnovic
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.43732

Transitioning between preparatory and precisely sequenced neuronal activity in production of a skilled behavior
Cited by: 20
Author(s): Vamsi Daliparthi, Ryosuke O. Tachibana, Brenton G. Cooper, Richard H. R. Hahnloser, Satoshi Kojima, Samuel J. Sober, Todd F. Roberts
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.12247

Hippocampal ensemble dynamics timestamp events in long-term memory
Cited by: 197
Author(s): Alon Rubin, Nitzan Geva, Liron Sheintuch, Yaniv Ziv
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.41542

Generality and opponency of rostromedial tegmental (RMTg) roles in valence processing
Cited by: 21
Author(s): Hao Li, Dominika Pullmann, Jennifer Y. Cho, Maya Eid, Thomas C. Jhou
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms160922509

Mitochondrial Optic Atrophy (OPA) 1 Processing Is Altered in Response to Neonatal Hypoxic-Ischemic Brain Injury
Cited by: 46
Author(s): Ana A. Baburamani, Chloe Hurling, Helen B. Stolp, Kristina Sobotka, Pierre Gressèns, Henrik Hagberg, Claire Thornton
Software Mentions: 1
Published: about 9 years ago

10.6028/jres.101.026

The Nucleic Acid Database: Present and future
Cited by: 2
Author(s): Helen M. Berman, Anke Gelbin, Lester Clowney, Shu Hsin Hsieh, Christine Zardecki, John D. Westbrook
Software Mentions: 1
Published: over 28 years ago

10.1523/ENEURO.0367-17.2018

Reward-Predictive Neural Activities in Striatal Striosome Compartments
Cited by: 44
Author(s): Tomohiko Yoshizawa, Makoto Ito, Kenji Doya
Software Mentions: 1
Published: almost 7 years ago

10.3390/ani10091660

Application of a Handheld Near-Infrared Spectrometer to Predict Gelatinized Starch, Fiber Fractions, and Mineral Content of Ground and Intact Extruded Dry Dog Food
Cited by: 10
Author(s): Arianna Goi, Marica Simoni, Federico Righi, Giulio Visentin, Massimo De Marchi
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2105-6-171

Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops
Cited by: 48
Author(s): Hélène Chiapello, Isabelle Bourgait, F Sourivong, G Heuclin, A. Gendrault-Jacquemard, Marie‐Agnès Petit, Meriem El Karoui
Software Mentions: 1
Published: over 19 years ago

10.1186/s12859-017-1787-5

CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components
Cited by: 18
Author(s): Henry Heberle, Marcelo Falsarella Carazzolle, Guilherme P. Telles, Gabriela Vaz Meirelles, Rosane Minghim
Software Mentions: 1
Published: about 7 years ago

10.1186/s12896-018-0417-2

Genetically encoded calcium indicator with NTnC-like design and enhanced fluorescence contrast and kinetics
Cited by: 15
Author(s): Danila A. Doronin, Natalia V. Barykina, Fedor V. Subach, Vladimir P. Sotskov, Viktor V. Plusnin, Olga A. Ivleva, Ekaterina Isaakova, Anna M. Varizhuk, Galina E. Pozmogova, Aleksey Malyshev, Ivan V. Smirnov, Kiryl D. Piatkevich, Konstantin V. Anokhin, Grigori Enikolopov
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2334-11-36

Geodemographics profiling of influenza A and B virus infections in community neighborhoods in Japan
Cited by: 19
Author(s): Yurika Kimura, Reiko Saito, Yoshiki Tsujimoto, Yoko Ono, Tomoki Nakaya, Yugo Shobugawa, Asami Sasaki, Taeko Oguma, Hiroshi Sano
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2458-10-755

Insights into social disparities in smoking prevalence using Mosaic, a novel measure of socioeconomic status: an analysis using a large primary care dataset
Cited by: 43
Author(s): Aarohi Sharma, Sarah Lewis, Lisa Szatkowski
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2458-13-546

Socioeconomic variations in access to smoking cessation interventions in UK primary care: insights using the Mosaic classification in a large dataset of primary care records
Cited by: 29
Author(s): Laura Douglas, Lisa Szatkowski
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2458-11-857

The distribution of lung cancer across sectors of society in the United Kingdom: a study using national primary care data
Cited by: 35
Author(s): Barbara Iyen, Richard Hubbard, Chris Smith, Emily Sparks, Emma Bradley, Alison Bourke, Laila J. Tata
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12918-016-0292-1

Role of plant MicroRNA in cross-species regulatory networks of humans
Cited by: 46
Author(s): Hao Zhang, Yanpu Li, Yuanning Liu, Haiming Liu, Hongyu Wang, Jia Wen, Yanmei Zhang, Chao Zhang, Dong Xu
Software Mentions: 1
Published: over 8 years ago

10.1186/s13041-019-0502-z

Cortical ensemble activity discriminates auditory attentional states
Cited by: 5
Author(s): Pan-tong Yao, Jia Shen, Liang Chen, Shaoyu Ge, Qiaojie Xiong
Software Mentions: 1
Published: about 5 years ago

10.3390/pharmaceutics12090816

Protective Role of IRBIT on Sodium Bicarbonate Cotransporter-n1 for Migratory Cancer Cells
Cited by: 9
Author(s): Soonho Hwang, Dong Min Shin, Jeong Hee Hong
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0186411

Allele-specific expression at the androgen receptor alpha gene in a hybrid unisexual fish, the Amazon molly (Poecilia formosa)
Cited by: 3
Author(s): Fenlu Zhu, Ingo Schlupp, Ralph Tiedemann
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0140912

Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction
Cited by: 14
Author(s): Ulrik Fahnøe, Anders Gorm Pedersen, Carolin Dräger, Richard Orton, Sandra Blome, Dirk W. Höper, Martin Beer, Thomas Bruun Rasmussen
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0008974

Three-Dimensional Macronutrient-Associated Fos Expression Patterns in the Mouse Brainstem
Cited by: 28
Author(s): Jessica Schwarz, Jasmine Burguet, Olivier Rampin, Gilles Fromentin, Philippe Andrey, Daniel Tomé, Yves Maurin, Nicolas Darcel
Software Mentions: 1
Published: almost 15 years ago

10.1016/j.celrep.2017.11.089

Modulation of SF1 Neuron Activity Coordinately Regulates Both Feeding Behavior and Associated Emotional States
Cited by: 60
Author(s): Paulius Viskaitis, Elaine E. Irvine, Mark A. Smith, Agharul I. Choudhury, Elisa Álvarez-Curto, Justyna Glegola, Darran G. Hardy, Silvia Pedroni, Maria R. Paiva Pessoa, Anushka B. P. Fernando, Loukia Katsouri, Alessandro Sardini, Mark A. Ungless, Graeme Milligan, Dominic J. Withers
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.celrep.2020.01.023

Opposing Regulation of Cocaine Seeking by Glutamate and GABA Neurons in the Ventral Pallidum
Cited by: 49
Author(s): Jasper A. Heinsbroek, Ana-Clara Bobadilla, Eric Dereschewitz, Ahlem Assali, Reda M Chalhoub, Christopher W. Cowan, Peter W. Kalivas
Software Mentions: 1
Published: almost 5 years ago

10.1155/2021/4812979

Detection of Oil Spill Using SAR Imagery Based on AlexNet Model
Cited by: 6
Author(s): Xinzhe Wang, Jiaxu Liu, Shuai Zhang, Qiwen Deng, Wei Zhuo, Yunhao Li, Jianchao Fan
Software Mentions: 1
Published: over 3 years ago

Projects: pypi: Mosaic

Papers Mentioning Mosaic 67