Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: PhiSpy
https://packages.ecosyste.ms/registries/pypi.org/packages/PhiSpy
Prophage finder using multiple metrics
31 versions
Latest release: almost 3 years ago
98 downloads last month
Papers Mentioning PhiSpy 66
10.1099/mgen.0.000503
Rapid molecular evolution of Spiroplasma symbionts of DrosophilaCited by: 13
Author(s): Michael Gerth, Humberto Martínez-Montoya, Paulino Ramirez, Florent Masson, Joanne S. Griffin, Rodolfo Aramayo, Stefanos Siozios, Bruno Lemaître, Mariana Mateos, Gregory D. D. Hurst
Software Mentions: 11
Published: almost 4 years ago
10.3389/fmicb.2018.03150
The Human Gut Virome in HypertensionCited by: 34
Author(s): Maozhen Han, Pengshuo Yang, Chunrong Zhong, Kang Ning
Software Mentions: 8
Published: almost 6 years ago
10.1186/s12864-018-4805-8
Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-SeqCited by: 14
Author(s): Karel Sedlář, Pavlína Koščová, Maryna Vasylkivska, Barbora Branská, Jan Kolek, Kristyna Kupkova, Petra Patáková, Ivo Provazník
Software Mentions: 7
Published: over 6 years ago
10.1371/journal.ppat.1009418
Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversityCited by: 10
Author(s): Cédric Lood, Charlotte Peeters, Quentin Lamy-Besnier, Jeroen Wagemans, Daniël De Vos, Marijke Proesmans, Jean‐Paul Pirnay, Fedoua Echahidi, Denis Piérard, M Thimmesch, Anca Boeras, Katrien Lagrou, Evelien De Canck, Elke De Wachter, Vera van Noort, Rob Lavigne, Peter Vandamme
Software Mentions: 7
Published: over 3 years ago
10.1093/gigascience/giz066
PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learningCited by: 102
Author(s): Zhencheng Fang, Jie Tan, Shu‐Fang Vivienne Wu, Mo Li, Congmin Xu, Zheng Xie, Huaiqiu Zhu
Software Mentions: 5
Published: over 5 years ago
10.1186/s12859-020-03838-2
Selected abstracts of “Bioinformatics: from Algorithms to Applications 2020” conferenceCited by: 3
Author(s): Robert J. Moore, Michael Barnathan, Brian Fristensky, Yán Li, Greg Knowles, Paul Gardner-Stephen, Angelo Bueti, Peter Anderson, Jianguang Qin, Andrew S. Ball
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0163111
MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data SetsCited by: 50
Author(s): Vanessa Isabell Jurtz, Julia Villarroel, Ole Lund, Mette Voldby Larsen, Morten Nielsen
Software Mentions: 5
Published: about 8 years ago
10.1186/s12866-021-02114-4
Genomic islands mediate environmental adaptation and the spread of antibiotic resistance in multiresistant Enterococci - evidence from genomic sequencesCited by: 13
Author(s): Weiwei Li, Ailan Wang
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41598-019-39847-2
Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered VirusCited by: 28
Author(s): Wojciech Gałan, Maciej Bąk, Małgorzata Jakubowska
Software Mentions: 4
Published: over 5 years ago
10.1128/AEM.00853-19
Generation of a Prophage-Free Variant of the Fast-Growing Bacterium Vibrio natriegensCited by: 25
Author(s): Eugen Pfeifer, Slawomir Michniewski, Cornelia Gätgens, Eugenia Münch, Felix L. Müller, Tino Polen, Andrew Millard, Bastian Blombach, Julia Frunzke
Software Mentions: 4
Published: about 5 years ago
10.3390/genes9080379
Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14Cited by: 22
Author(s): George C. diCenzo, Klaudia Dębiec, Jan Krzysztoforski, Witold Uhrynowski, Alessio Mengoni, Camilla Fagorzi, Adrian Górecki, Łukasz Dziewit, Tomasz Bajda, Grzegorz Rzepa, Łukasz Drewniak
Software Mentions: 4
Published: over 6 years ago
10.1128/mBio.02863-20
Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic FibrosisCited by: 10
Author(s): Marija Dmitrijeva, Christian Kahlert, Rounak Feigelman, Rebekka Kleiner, Oliver Nolte, Werner C. Albrich, Florent Baty, Christian von Mering
Software Mentions: 4
Published: over 3 years ago
10.1186/s40168-018-0573-6
A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phageCited by: 44
Author(s): Sean Benler, Ana G Cobián-Güemes, Katelyn McNair, Shr-Hau Hung, Kyle Levi, Robert A. Edwards, Forest Rohwer
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2021.674952
Genomics-Enabled Novel Insight Into the Pathovar-Specific Population Structure of the Bacterial Leaf Streak Pathogen Xanthomonas translucens in Small Grain CerealsCited by: 19
Author(s): Syed Mashab Ali Shah, Moein Khojasteh, Qi Wang, S. Mohsen Taghavi, Zhi-Hong Xu, Pejman Khodaygan, Lifang Zou, Sedighe Mohammadikhah, Gongyou Chen, Ebrahim Osdaghi
Software Mentions: 3
Published: over 3 years ago
10.3389/fmolb.2020.00160
Gene Duplications in the Genomes of Staphylococci and EnterococciCited by: 5
Author(s): José Francisco Sánchez-Herrero, Manuel Bernabeu, Alejandro Prieto, Mário Hüttener, Antonio Juárez
Software Mentions: 3
Published: over 4 years ago
10.1093/gbe/evu263
Global Phylogenomic Analysis of Nonencapsulated<i>Streptococcus pneumoniae</i>Reveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic LineagesCited by: 43
Author(s): Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hans Jürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermı́nia de Lencastre, Peter W. M. Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoğlu Eser, Donald E. Low, Heidi Smith‐Vaughan, Andrea Endimiani, Marianne Küffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mühlemann, Stephen D. Bentley
Software Mentions: 2
Published: almost 10 years ago
10.3389/fmicb.2018.02553
Genome Structure of the Opportunistic Pathogen Paracoccus yeei (Alphaproteobacteria) and Identification of Putative Virulence FactorsCited by: 30
Author(s): Robert Lasek, Magdalena Szuplewska, Monika Mitura, Przemysław Decewicz, Cora Chmielowska, Aleksandra Pawłot, Dorota Sentkowska, Jakub Czarnecki, Dariusz Bartosik
Software Mentions: 2
Published: about 6 years ago
10.1128/MRA.01703-18
Complete Genome Sequence of <i>Shewanella</i> sp. Strain TH2012, Isolated from Shrimp in a Cultivation Pond Exhibiting Early Mortality SyndromeCited by: 8
Author(s): Piyanuch Wechprasit, Muthita Panphloi, Siripong Thitamadee, Kallaya Sritunyalucksana, Anuphap Prachumwat
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2164-15-654
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensionsCited by: 24
Author(s): Bas E. Dutilh, Cristiane C. Thompson, Ana Carolina Paulo Vicente, Michel Abanto, Clarence Lee, Genivaldo G. Z. Silva, Robert Schmieder, Bruno de Bezerril Andrade, Luciane A. Chimetto, Daniel A. Cuevas, Daniel Garza, Iruka N. Okeke, Aaron O. Aboderin, Jessica Spangler, Tristen Ross, Elizabeth A. Dinsdale, Fabiano L. Thompson, Timothy T. Harkins, Robert A. Edwards
Software Mentions: 2
Published: over 10 years ago
10.3389/fmicb.2019.00381
Nucleotide Second Messenger-Based Signaling in Extreme Acidophiles of the Acidithiobacillus Species Complex: Partition Between the Core and Variable Gene ComplementsCited by: 14
Author(s): Ana Moya-Beltrán, Camila Rojas-Villalobos, Mauricio Díaz, Nicolás Guiliani, Raquel Quatrini, Matías Castro
Software Mentions: 2
Published: over 5 years ago
10.1128/MRA.00077-21
Draft Genome Sequence of the Community-Associated Staphylococcus aureus Sequence Type 88 Strain LVP-7, Isolated from an Ocular InfectionCited by: 0
Author(s): Savitha Nadig, Sneha Murthy, Muralidharan Vandanashree, Hosahalli Subramanya, B. Gopal, Shruthi S. Vembar
Software Mentions: 2
Published: almost 4 years ago
10.1186/s40168-020-00990-y
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA virusesCited by: 349
Author(s): Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Domínguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Software Mentions: 2
Published: almost 4 years ago
10.3390/v9070161
Characterization of Sinorhizobium sp. LM21 Prophages and Virus-Encoded DNA Methyltransferases in the Light of Comparative Genomic Analyses of the Sinorhizobial ViromeCited by: 10
Author(s): Przemysław Decewicz, Monika Radlińska, Łukasz Dziewit
Software Mentions: 2
Published: over 7 years ago
10.1186/1757-4749-4-20
Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, MalaysiaCited by: 8
Author(s): Ramani Baddam, Narender Kumar, Sabiha Shaik, Suma Tiruvayipati, Soo Tein Ngoi, Kwai Lin Thong, Niyaz Ahmed
Software Mentions: 2
Published: almost 12 years ago
10.1186/s12864-018-5121-z
Phenotypic and genomic comparison of Photorhabdus luminescens subsp. laumondii TT01 and a widely used rifampicin-resistant Photorhabdus luminescens laboratory strainCited by: 16
Author(s): Maria-Antonia Zamora-Lagos, Simone Eckstein, Angela Langer, Athanasios Gazanis, Friedhelm Pfeiffer, Bianca Habermann, Ralf Heermann
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0229125
Comparative genomic analysis of Proteus spp. isolated from tree shrews indicated unexpectedly high genetic diversityCited by: 9
Author(s): Wenpeng Gu, Wenguang Wang, Pinfen Tong, Chenxiu Liu, Jinsheng Jia, Caixia Lü, Yuanyuan Han, Xiaomei Sun, Dexuan Kuang, Na Li, Jiejie Dai
Software Mentions: 2
Published: over 4 years ago
10.1038/ismej.2016.116
Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transductionCited by: 60
Author(s): Ovidiu Popa, Giddy Landan, Tal Dagan
Software Mentions: 2
Published: about 8 years ago
10.3389/fcimb.2021.652957
De Novo Sequencing Provides Insights Into the Pathogenicity of Foodborne Vibrio parahaemolyticusCited by: 4
Author(s): Jianfei Liu, Ken Qin, Chenglin Wu, Kaifei Fu, Xiaojie Yu, Lijun Zhou
Software Mentions: 2
Published: over 3 years ago
10.1186/s12866-021-02157-7
Complete genome sequence analysis of the peanut pathogen Ralstonia solanacearum strain Rs-P.362200Cited by: 4
Author(s): Kun Chen, Lihui Wang, Hua Chen, Chong Zhang, Shanshan Wang, Panpan Chu, Shaokang Li, Huiwen Fu, Tao Sun, Menghan Liu, Qiang Yang, Huasong Zou
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-017-09317-8
A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437Cited by: 11
Author(s): Akbar Adjie Pratama, Jan Dirk van Elsas
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-018-38202-1
Draft Genome Sequence of Chromatium okenii Isolated from the Stratified Alpine Lake CadagnoCited by: 12
Author(s): Samuel M. Luedin, Nicole Liechti, Raymond P. Cox, Francesco Danza, Niels‐Ulrik Frigaard, Nicole R. Posth, Joël F. Pothier, Samuele Roman, Nicola Storelli, Matthias Wittwer, Mauro Tonolla
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-44460-4
Characterization of the virome of Paracoccus spp. (Alphaproteobacteria) by combined in silico and in vivo approachesCited by: 14
Author(s): Przemysław Decewicz, Łukasz Dziewit, Piotr Golec, Patrycja Kozlowska, Dariusz Bartosik, Monika Radlińska
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-57742-z
EasyPrimer: user-friendly tool for pan-PCR/HRM primers design. Development of an HRM protocol on wzi gene for fast Klebsiella pneumoniae typingCited by: 10
Author(s): Matteo Perini, Aurora Piazza, Simona Panelli, Domenico Di Carlo, Marta Corbella, Floriana Gona, Francesca Vailati, Piero Marone, Daniela María Cirillo, Claudio Farina, Gianvincenzo Zuccotti, Francesco Comandatore
Software Mentions: 1
Published: almost 5 years ago
10.1089/sur.2018.184
Bacteriophages: A Therapy Concept against Multi-Drug–Resistant BacteriaCited by: 70
Author(s): Christine Rohde, Johannes Wittmann, Elizabeth Kutter
Software Mentions: 1
Published: almost 6 years ago
10.1155/2016/4512493
Comparative Genomics Analysis of Two Different Virulent Bovine<i> Pasteurella multocida</i> IsolatesCited by: 19
Author(s): Huihui Du, Rendong Fang, Tingting Pan, Lei Tian, Nengzhang Li, Qing‐Yu He, Rui Wu, Yuanyi Peng, Zeyang Zhou
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms19071831
Relating Phage Genomes to Helicobacter pylori Population Structure: General Steps Using Whole-Genome Sequencing DataCited by: 11
Author(s): Filipa F. Vale, Philippe Lehours
Software Mentions: 1
Published: over 6 years ago
10.3390/ani10020279
Application of Campylobacter jejuni Phages: Challenges and PerspectivesCited by: 23
Author(s): Leonid Ushanov, Besarion Lasareishvili, Irakli Janashia, Andreas E. Zautner
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms21062096
Identification and Characterization of the First Virulent Phages, Including a Novel Jumbo Virus, Infecting Ochrobactrum spp.Cited by: 2
Author(s): Przemysław Decewicz, Piotr Golec, Mateusz Szymczak, Monika Radlińska, Łukasz Dziewit
Software Mentions: 1
Published: over 4 years ago
10.1186/s12866-019-1393-y
Phylogenetic relationship of prophages is affected by CRISPR selection in Group A StreptococcusCited by: 11
Author(s): Shunsuke Yamada, Masaki Shibasaki, Kazunori Murase, Takayasu Watanabe, Chihiro Aikawa, Takashi Nozawa, Ichirô Nakagawa
Software Mentions: 1
Published: almost 6 years ago
10.1128/MRA.01456-20
Complete Genome Sequence of the Red-Pigmented Strain Serratia marcescens SCQ1 and Its Four Spontaneous Pigment MutantsCited by: 1
Author(s): T. Xiang, Rui Li, Jing Xu, Chenyang Xu, Nuo Wang, Wei Zhou, Yu Zhao, Minhui Luo, Yongji Wan
Software Mentions: 1
Published: over 3 years ago
10.1128/MRA.00572-21
Draft Genome Sequence of the Multidrug-Resistant Strain Pseudomonas aeruginosa PA291, Isolated from Cystic Fibrosis SputumCited by: 0
Author(s): Tiffany Luong, Ashley Schumann, Douglas Conrad, Dwayne R. Roach
Software Mentions: 1
Published: about 3 years ago
10.1128/MRA.01013-20
Genome Sequence of Clinical Strain Pseudomonas aeruginosa NRD619Cited by: 0
Author(s): Laura Sisk-Hackworth, Andrew D. Sue, Saima Aslam, Dwayne R. Roach
Software Mentions: 1
Published: about 4 years ago
10.1186/s40168-019-0657-y
Mining, analyzing, and integrating viral signals from metagenomic dataCited by: 51
Author(s): Tingting Zheng, Jun Li, Yueqiong Ni, Kang Kang, Maria-Anna Misiakou, Lejla Imamovic, Billy K. C. Chow, Anne A Rode, Peter Bytzer, Morten Otto Alexander Sommer, Gianni Panagiotou
Software Mentions: 1
Published: over 5 years ago
10.1186/s40168-017-0283-5
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic dataCited by: 369
Author(s): Jie Ren, Nathan A. Ahlgren, Yang Lu, Jed A. Fuhrman, Fengzhu Sun
Software Mentions: 1
Published: over 7 years ago
10.3390/microorganisms9050931
Ecophysiological Features Shape the Distribution of Prophages and CRISPR in Sulfate Reducing ProkaryotesCited by: 2
Author(s): Roberto Orellana, Alejandra Arancibia, Leonardo Badilla, Jonathan Acosta, Gabriela Arancibia, Rodrigo Escar, Gustavo Ferrada, Michael Seeger
Software Mentions: 1
Published: over 3 years ago
10.3390/v8050116
HostPhinder: A Phage Host Prediction ToolCited by: 100
Author(s): Julia Villarroel, Kortine Kleinheinz, Vanessa Isabell Jurtz, Henrike Zschach, Ole Lund, Morten Nielsen, Mette Voldby Larsen
Software Mentions: 1
Published: over 8 years ago
10.3390/v10040178
Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production StrainsCited by: 105
Author(s): Christine Rohde, Grégory Resch, Jean‐Paul Pirnay, Bob Blasdel, Laurent Debarbieux, Daniel Gelman, Andrzej Górski, Ronen Hazan, Isabelle Huys, Elene Kakabadze, Małgorzata Łobocka, Alice Maestri, Gabriel Marchesan Almeida, Khatuna Makalatia, Danish J. Malik, Ivana Mašlaňová, Maia Merabishvili, Roman Pantůček, Thomas Rose, Dana Štveráková, Hilde Van Raemdonck, Gilbert Verbeken, Ніна Чанішвілі
Software Mentions: 1
Published: over 6 years ago
10.3390/v10060288
Phage Therapy: What Have We Learned?Cited by: 88
Author(s): Andrzej Górski, Ryszard Międzybrodzki, Małgorzata Łobocka, Aleksandra Głowacka-Rutkowska, Agnieszka Bednarek, Jan Borysowski, Ewa Jończyk‐Matysiak, Marzanna Łusiak-Szelachowska, Beata Weber‐Dąbrowska, Natalia Bagińska, Sławomir Letkiewicz, Krystyna Dąbrowska, J. M. J. C. Scheres
Software Mentions: 1
Published: over 6 years ago
10.3390/v11070587
Phages and Human Health: More Than Idle HitchhikersCited by: 40
Author(s): Dylan Lawrence, Megan T. Baldridge, Scott A. Handley
Software Mentions: 1
Published: over 5 years ago
10.3390/v13030455
Common Oral Medications Lead to Prophage Induction in Bacterial Isolates from the Human GutCited by: 32
Author(s): Steven G. Sutcliffe, Michael Shamash, Alexander P. Hynes, Corinne F. Maurice
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.4057
Comparative analysis of prophages in <i>Streptococcus mutans</i> genomesCited by: 6
Author(s): Tiwei Fu, Xiangyu Fan, Quanxin Long, Wanyan Deng, Jinlin Song, Enyi Huang
Software Mentions: 1
Published: about 7 years ago
10.7717/peerj.985
VirSorter: mining viral signal from microbial genomic dataCited by: 832
Author(s): Simon Roux, François Enault, Bonnie Hurwitz, Matthew B. Sullivan
Software Mentions: 1
Published: over 9 years ago
10.7717/peerj.9158
Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomicsCited by: 2
Author(s): Danillo Oliveira Alvarenga, Márcia R. Franco, Kaarina Sivonen, Marli Fátima Fiore, Alessandro M. Varani
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0064285
Mechanistic Model of Rothia mucilaginosa Adaptation toward Persistence in the CF Lung, Based on a Genome Reconstructed from Metagenomic DataCited by: 48
Author(s): Yan Wei Lim, Robert Schmieder, Matthew Haynes, Mike Furlan, T. David Matthews, Katrine Whiteson, Stephen J. Poole, Christopher S. Hayes, David A. Low, Heather Maughan, Robert A. Edwards, Douglas Conrad, Forest Rohwer
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0126883
Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and GallinarumCited by: 35
Author(s): T. David Matthews, Robert Schmieder, Genivaldo G. Z. Silva, Julia Busch, Noriko A. Cassman, Bas E. Dutilh, Dawn Green, Brian C. Matlock, Brian J. Heffernan, Gary J. Olsen, Leigh Farris Hanna, Dieter M. Schifferli, Stanley Maloy, Elizabeth A. Dinsdale, Robert A. Edwards
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0082985
Functional Environmental Screening of a Metagenomic Library Identifies stlA; A Unique Salt Tolerance Locus from the Human Gut MicrobiomeCited by: 29
Author(s): Eamonn P. Culligan, Roy D. Sleator, Julian R. Marchesi, Colin Hill
Software Mentions: 1
Published: almost 11 years ago
10.3389/fcimb.2021.635597
Rekindling of a Masterful Precedent; Bacteriophage: Reappraisal and Future PursuitsCited by: 6
Author(s): Israa M. Abd-Allah, Ghadir S. El-Housseiny, Ibrahim S. Yahia, Khaled M. Aboshanab, Nadia A. Hassouna
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2018.00644
PhageWeb – Web Interface for Rapid Identification and Characterization of Prophages in Bacterial GenomesCited by: 28
Author(s): Ailton Lopes de Sousa, Dener Maués, Amália Raiana Fonseca Lobato, Edian F. Franco, Kenny C. Pinheiro, Fabrício Almeida Araújo, Yan Pantoja, Artur da Costa da Luiz Silva, Jefferson Morais, Rommel Thiago Jucá Ramos
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2021.664560
Reads Binning Improves the Assembly of Viral Genome Sequences From Metagenomic SamplesCited by: 1
Author(s): Kai Song
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.01176
Comparative Genomics of Acinetobacter baumannii Clinical Strains From Brazil Reveals Polyclonal Dissemination and Selective Exchange of Mobile Genetic Elements Associated With Resistance GenesCited by: 24
Author(s): Nilma Cintra Leal, Túlio de Lima Campos, Antônio Mauro Rezende, Cássia Docena, Carina Lucena Mendes-Marques, Felipe Lira de Sá Cavalcanti, Gabriel Luz Wallau, Igor Vasconcelos Rocha, Carmelita L. B. Cavalcanti, Dyana Leal Veras, Lílian Rodrigues Alves, Mariana Andrade-Figueiredo, Maria Paloma Silva de Barros, Alzira Maria Paiva de Almeida, Márcia Maria Camargo de Morais, Tereza Cristina Leal-Balbino, Danilo Elias Xavier, Osvaldo P. de Melo Neto
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2014.00186
Bacteriophages of Leuconostoc, Oenococcus, and WeissellaCited by: 51
Author(s): Witold Kot, Horst Neve, Knut J. Heller, Finn K. Vogensen
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2018.00835
Evolutionary History of Bacteriophages in the Genus ParaburkholderiaCited by: 11
Author(s): Akbar Adjie Pratama, Maryam Chaib De Mares, Jan Dirk van Elsas
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2019.00138
May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot Pectobacteriaceae: Pectobacterium spp. and Dickeya spp.Cited by: 25
Author(s): Robert Czajkowski
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2017.00559
Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of OmicsCited by: 33
Author(s): Krupa Parmar, Saurabh L. Gaikwad, Prashant K. Dhakephalkar, Ramesh Kothari, Ravindra Singh
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00102-17
Complete Genome Sequences of Two Phage-Like Plasmids Carrying the CTX-M-15 Extended-Spectrum β-Lactamase GeneCited by: 14
Author(s): Anna Colavecchio, Julie Jeukens, Luca Freschi, Jean-Guillaume Edmond Rheault, Iréna Kukavica-Ibrulj, Roger C. Levesque, Jeffrey T. LeJeune, Lawrence Goodridge
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00110-17
AnCo3, a New Member of the Emerging Family of Phage-Like PlasmidsCited by: 1
Author(s): Anna Colavecchio, Julie Jeukens, Luca Freschi, Jean-Guillaume Edmond Rheault, Iréna Kukavica-Ibrulj, Roger C. Levesque, Lawrence Goodridge
Software Mentions: 1
Published: over 7 years ago