pypi: PhiSpy | Projects | Ecosyste.ms: Papers

10.1099/mgen.0.000503

Rapid molecular evolution of Spiroplasma symbionts of Drosophila
Cited by: 13
Author(s): Michael Gerth, Humberto Martínez-Montoya, Paulino Ramirez, Florent Masson, Joanne S. Griffin, Rodolfo Aramayo, Stefanos Siozios, Bruno Lemaître, Mariana Mateos, Gregory D. D. Hurst
Software Mentions: 11
Published: almost 4 years ago

10.3389/fmicb.2018.03150

The Human Gut Virome in Hypertension
Cited by: 34
Author(s): Maozhen Han, Pengshuo Yang, Chunrong Zhong, Kang Ning
Software Mentions: 8
Published: about 6 years ago

10.1186/s12864-018-4805-8

Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq
Cited by: 14
Author(s): Karel Sedlář, Pavlína Koščová, Maryna Vasylkivska, Barbora Branská, Jan Kolek, Kristyna Kupkova, Petra Patáková, Ivo Provazník
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.ppat.1009418

Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity
Cited by: 10
Author(s): Cédric Lood, Charlotte Peeters, Quentin Lamy-Besnier, Jeroen Wagemans, Daniël De Vos, Marijke Proesmans, Jean‐Paul Pirnay, Fedoua Echahidi, Denis Piérard, M Thimmesch, Anca Boeras, Katrien Lagrou, Evelien De Canck, Elke De Wachter, Vera van Noort, Rob Lavigne, Peter Vandamme
Software Mentions: 7
Published: almost 4 years ago

10.1093/gigascience/giz066

PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning
Cited by: 102
Author(s): Zhencheng Fang, Jie Tan, Shu‐Fang Vivienne Wu, Mo Li, Congmin Xu, Zheng Xie, Huaiqiu Zhu
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-020-03838-2

Selected abstracts of “Bioinformatics: from Algorithms to Applications 2020” conference
Cited by: 3
Author(s): Robert J. Moore, Michael Barnathan, Brian Fristensky, Yán Li, Greg Knowles, Paul Gardner-Stephen, Angelo Bueti, Peter Anderson, Jianguang Qin, Andrew S. Ball
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0163111

MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets
Cited by: 50
Author(s): Vanessa Isabell Jurtz, Julia Villarroel, Ole Lund, Mette Voldby Larsen, Morten Nielsen
Software Mentions: 5
Published: about 8 years ago

10.1186/s12866-021-02114-4

Genomic islands mediate environmental adaptation and the spread of antibiotic resistance in multiresistant Enterococci - evidence from genomic sequences
Cited by: 13
Author(s): Weiwei Li, Ailan Wang
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-019-39847-2

Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered Virus
Cited by: 28
Author(s): Wojciech Gałan, Maciej Bąk, Małgorzata Jakubowska
Software Mentions: 4
Published: almost 6 years ago

10.1128/AEM.00853-19

Generation of a Prophage-Free Variant of the Fast-Growing Bacterium Vibrio natriegens
Cited by: 25
Author(s): Eugen Pfeifer, Slawomir Michniewski, Cornelia Gätgens, Eugenia Münch, Felix L. Müller, Tino Polen, Andrew Millard, Bastian Blombach, Julia Frunzke
Software Mentions: 4
Published: over 5 years ago

10.3390/genes9080379

Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14
Cited by: 22
Author(s): George C. diCenzo, Klaudia Dębiec, Jan Krzysztoforski, Witold Uhrynowski, Alessio Mengoni, Camilla Fagorzi, Adrian Górecki, Łukasz Dziewit, Tomasz Bajda, Grzegorz Rzepa, Łukasz Drewniak
Software Mentions: 4
Published: over 6 years ago

10.1128/mBio.02863-20

Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis
Cited by: 10
Author(s): Marija Dmitrijeva, Christian Kahlert, Rounak Feigelman, Rebekka Kleiner, Oliver Nolte, Werner C. Albrich, Florent Baty, Christian von Mering
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-018-0573-6

A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage
Cited by: 44
Author(s): Sean Benler, Ana G Cobián-Güemes, Katelyn McNair, Shr-Hau Hung, Kyle Levi, Robert A. Edwards, Forest Rohwer
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2021.674952

Genomics-Enabled Novel Insight Into the Pathovar-Specific Population Structure of the Bacterial Leaf Streak Pathogen Xanthomonas translucens in Small Grain Cereals
Cited by: 19
Author(s): Syed Mashab Ali Shah, Moein Khojasteh, Qi Wang, S. Mohsen Taghavi, Zhi-Hong Xu, Pejman Khodaygan, Lifang Zou, Sedighe Mohammadikhah, Gongyou Chen, Ebrahim Osdaghi
Software Mentions: 3
Published: over 3 years ago

10.3389/fmolb.2020.00160

Gene Duplications in the Genomes of Staphylococci and Enterococci
Cited by: 5
Author(s): José Francisco Sánchez-Herrero, Manuel Bernabeu, Alejandro Prieto, Mário Hüttener, Antonio Juárez
Software Mentions: 3
Published: over 4 years ago

10.1093/gbe/evu263

Global Phylogenomic Analysis of NonencapsulatedStreptococcus pneumoniaeReveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages
Cited by: 43
Author(s): Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hans Jürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermı́nia de Lencastre, Peter W. M. Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoğlu Eser, Donald E. Low, Heidi Smith‐Vaughan, Andrea Endimiani, Marianne Küffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mühlemann, Stephen D. Bentley
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2018.02553

Genome Structure of the Opportunistic Pathogen Paracoccus yeei (Alphaproteobacteria) and Identification of Putative Virulence Factors
Cited by: 30
Author(s): Robert Lasek, Magdalena Szuplewska, Monika Mitura, Przemysław Decewicz, Cora Chmielowska, Aleksandra Pawłot, Dorota Sentkowska, Jakub Czarnecki, Dariusz Bartosik
Software Mentions: 2
Published: about 6 years ago

10.1128/MRA.01703-18

Complete Genome Sequence of Shewanella sp. Strain TH2012, Isolated from Shrimp in a Cultivation Pond Exhibiting Early Mortality Syndrome
Cited by: 8
Author(s): Piyanuch Wechprasit, Muthita Panphloi, Siripong Thitamadee, Kallaya Sritunyalucksana, Anuphap Prachumwat
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-15-654

Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
Cited by: 24
Author(s): Bas E. Dutilh, Cristiane C. Thompson, Ana Carolina Paulo Vicente, Michel Abanto, Clarence Lee, Genivaldo G. Z. Silva, Robert Schmieder, Bruno de Bezerril Andrade, Luciane A. Chimetto, Daniel A. Cuevas, Daniel Garza, Iruka N. Okeke, Aaron O. Aboderin, Jessica Spangler, Tristen Ross, Elizabeth A. Dinsdale, Fabiano L. Thompson, Timothy T. Harkins, Robert A. Edwards
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2019.00381

Nucleotide Second Messenger-Based Signaling in Extreme Acidophiles of the Acidithiobacillus Species Complex: Partition Between the Core and Variable Gene Complements
Cited by: 14
Author(s): Ana Moya-Beltrán, Camila Rojas-Villalobos, Mauricio Díaz, Nicolás Guiliani, Raquel Quatrini, Matías Castro
Software Mentions: 2
Published: almost 6 years ago

10.1128/MRA.00077-21

Draft Genome Sequence of the Community-Associated Staphylococcus aureus Sequence Type 88 Strain LVP-7, Isolated from an Ocular Infection
Cited by: 0
Author(s): Savitha Nadig, Sneha Murthy, Muralidharan Vandanashree, Hosahalli Subramanya, B. Gopal, Shruthi S. Vembar
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40168-020-00990-y

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Cited by: 349
Author(s): Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Domínguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Software Mentions: 2
Published: almost 4 years ago

10.3390/v9070161

Characterization of Sinorhizobium sp. LM21 Prophages and Virus-Encoded DNA Methyltransferases in the Light of Comparative Genomic Analyses of the Sinorhizobial Virome
Cited by: 10
Author(s): Przemysław Decewicz, Monika Radlińska, Łukasz Dziewit
Software Mentions: 2
Published: over 7 years ago

10.1186/1757-4749-4-20

Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, Malaysia
Cited by: 8
Author(s): Ramani Baddam, Narender Kumar, Sabiha Shaik, Suma Tiruvayipati, Soo Tein Ngoi, Kwai Lin Thong, Niyaz Ahmed
Software Mentions: 2
Published: about 12 years ago

10.1186/s12864-018-5121-z

Phenotypic and genomic comparison of Photorhabdus luminescens subsp. laumondii TT01 and a widely used rifampicin-resistant Photorhabdus luminescens laboratory strain
Cited by: 16
Author(s): Maria-Antonia Zamora-Lagos, Simone Eckstein, Angela Langer, Athanasios Gazanis, Friedhelm Pfeiffer, Bianca Habermann, Ralf Heermann
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0229125

Comparative genomic analysis of Proteus spp. isolated from tree shrews indicated unexpectedly high genetic diversity
Cited by: 9
Author(s): Wenpeng Gu, Wenguang Wang, Pinfen Tong, Chenxiu Liu, Jinsheng Jia, Caixia Lü, Yuanyuan Han, Xiaomei Sun, Dexuan Kuang, Na Li, Jiejie Dai
Software Mentions: 2
Published: almost 5 years ago

10.1038/ismej.2016.116

Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction
Cited by: 60
Author(s): Ovidiu Popa, Giddy Landan, Tal Dagan
Software Mentions: 2
Published: over 8 years ago

10.3389/fcimb.2021.652957

De Novo Sequencing Provides Insights Into the Pathogenicity of Foodborne Vibrio parahaemolyticus
Cited by: 4
Author(s): Jianfei Liu, Ken Qin, Chenglin Wu, Kaifei Fu, Xiaojie Yu, Lijun Zhou
Software Mentions: 2
Published: over 3 years ago

10.1186/s12866-021-02157-7

Complete genome sequence analysis of the peanut pathogen Ralstonia solanacearum strain Rs-P.362200
Cited by: 4
Author(s): Kun Chen, Lihui Wang, Hua Chen, Chong Zhang, Shanshan Wang, Panpan Chu, Shaokang Li, Huiwen Fu, Tao Sun, Menghan Liu, Qiang Yang, Huasong Zou
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-017-09317-8

A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437
Cited by: 11
Author(s): Akbar Adjie Pratama, Jan Dirk van Elsas
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-38202-1

Draft Genome Sequence of Chromatium okenii Isolated from the Stratified Alpine Lake Cadagno
Cited by: 12
Author(s): Samuel M. Luedin, Nicole Liechti, Raymond P. Cox, Francesco Danza, Niels‐Ulrik Frigaard, Nicole R. Posth, Joël F. Pothier, Samuele Roman, Nicola Storelli, Matthias Wittwer, Mauro Tonolla
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-44460-4

Characterization of the virome of Paracoccus spp. (Alphaproteobacteria) by combined in silico and in vivo approaches
Cited by: 14
Author(s): Przemysław Decewicz, Łukasz Dziewit, Piotr Golec, Patrycja Kozlowska, Dariusz Bartosik, Monika Radlińska
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-57742-z

EasyPrimer: user-friendly tool for pan-PCR/HRM primers design. Development of an HRM protocol on wzi gene for fast Klebsiella pneumoniae typing
Cited by: 10
Author(s): Matteo Perini, Aurora Piazza, Simona Panelli, Domenico Di Carlo, Marta Corbella, Floriana Gona, Francesca Vailati, Piero Marone, Daniela María Cirillo, Claudio Farina, Gianvincenzo Zuccotti, Francesco Comandatore
Software Mentions: 1
Published: almost 5 years ago

10.1089/sur.2018.184

Bacteriophages: A Therapy Concept against Multi-Drug–Resistant Bacteria
Cited by: 70
Author(s): Christine Rohde, Johannes Wittmann, Elizabeth Kutter
Software Mentions: 1
Published: about 6 years ago

10.1155/2016/4512493

Comparative Genomics Analysis of Two Different Virulent Bovine Pasteurella multocida Isolates
Cited by: 19
Author(s): Huihui Du, Rendong Fang, Tingting Pan, Lei Tian, Nengzhang Li, Qing‐Yu He, Rui Wu, Yuanyi Peng, Zeyang Zhou
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms19071831

Relating Phage Genomes to Helicobacter pylori Population Structure: General Steps Using Whole-Genome Sequencing Data
Cited by: 11
Author(s): Filipa F. Vale, Philippe Lehours
Software Mentions: 1
Published: over 6 years ago

10.3390/ani10020279

Application of Campylobacter jejuni Phages: Challenges and Perspectives
Cited by: 23
Author(s): Leonid Ushanov, Besarion Lasareishvili, Irakli Janashia, Andreas E. Zautner
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21062096

Identification and Characterization of the First Virulent Phages, Including a Novel Jumbo Virus, Infecting Ochrobactrum spp.
Cited by: 2
Author(s): Przemysław Decewicz, Piotr Golec, Mateusz Szymczak, Monika Radlińska, Łukasz Dziewit
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12866-019-1393-y

Phylogenetic relationship of prophages is affected by CRISPR selection in Group A Streptococcus
Cited by: 11
Author(s): Shunsuke Yamada, Masaki Shibasaki, Kazunori Murase, Takayasu Watanabe, Chihiro Aikawa, Takashi Nozawa, Ichirô Nakagawa
Software Mentions: 1
Published: almost 6 years ago

10.1128/MRA.01456-20

Complete Genome Sequence of the Red-Pigmented Strain Serratia marcescens SCQ1 and Its Four Spontaneous Pigment Mutants
Cited by: 1
Author(s): T. Xiang, Rui Li, Jing Xu, Chenyang Xu, Nuo Wang, Wei Zhou, Yu Zhao, Minhui Luo, Yongji Wan
Software Mentions: 1
Published: over 3 years ago

10.1128/MRA.00572-21

Draft Genome Sequence of the Multidrug-Resistant Strain Pseudomonas aeruginosa PA291, Isolated from Cystic Fibrosis Sputum
Cited by: 0
Author(s): Tiffany Luong, Ashley Schumann, Douglas Conrad, Dwayne R. Roach
Software Mentions: 1
Published: over 3 years ago

10.1128/MRA.01013-20

Genome Sequence of Clinical Strain Pseudomonas aeruginosa NRD619
Cited by: 0
Author(s): Laura Sisk-Hackworth, Andrew D. Sue, Saima Aslam, Dwayne R. Roach
Software Mentions: 1
Published: about 4 years ago

10.1186/s40168-019-0657-y

Mining, analyzing, and integrating viral signals from metagenomic data
Cited by: 51
Author(s): Tingting Zheng, Jun Li, Yueqiong Ni, Kang Kang, Maria-Anna Misiakou, Lejla Imamovic, Billy K. C. Chow, Anne A Rode, Peter Bytzer, Morten Otto Alexander Sommer, Gianni Panagiotou
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-017-0283-5

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
Cited by: 369
Author(s): Jie Ren, Nathan A. Ahlgren, Yang Lu, Jed A. Fuhrman, Fengzhu Sun
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms9050931

Ecophysiological Features Shape the Distribution of Prophages and CRISPR in Sulfate Reducing Prokaryotes
Cited by: 2
Author(s): Roberto Orellana, Alejandra Arancibia, Leonardo Badilla, Jonathan Acosta, Gabriela Arancibia, Rodrigo Escar, Gustavo Ferrada, Michael Seeger
Software Mentions: 1
Published: over 3 years ago

10.3390/v8050116

HostPhinder: A Phage Host Prediction Tool
Cited by: 100
Author(s): Julia Villarroel, Kortine Kleinheinz, Vanessa Isabell Jurtz, Henrike Zschach, Ole Lund, Morten Nielsen, Mette Voldby Larsen
Software Mentions: 1
Published: over 8 years ago

10.3390/v10040178

Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production Strains
Cited by: 105
Author(s): Christine Rohde, Grégory Resch, Jean‐Paul Pirnay, Bob Blasdel, Laurent Debarbieux, Daniel Gelman, Andrzej Górski, Ronen Hazan, Isabelle Huys, Elene Kakabadze, Małgorzata Łobocka, Alice Maestri, Gabriel Marchesan Almeida, Khatuna Makalatia, Danish J. Malik, Ivana Mašlaňová, Maia Merabishvili, Roman Pantůček, Thomas Rose, Dana Štveráková, Hilde Van Raemdonck, Gilbert Verbeken, Ніна Чанішвілі
Software Mentions: 1
Published: over 6 years ago

10.3390/v10060288

Phage Therapy: What Have We Learned?
Cited by: 88
Author(s): Andrzej Górski, Ryszard Międzybrodzki, Małgorzata Łobocka, Aleksandra Głowacka-Rutkowska, Agnieszka Bednarek, Jan Borysowski, Ewa Jończyk‐Matysiak, Marzanna Łusiak-Szelachowska, Beata Weber‐Dąbrowska, Natalia Bagińska, Sławomir Letkiewicz, Krystyna Dąbrowska, J. M. J. C. Scheres
Software Mentions: 1
Published: over 6 years ago

10.3390/v11070587

Phages and Human Health: More Than Idle Hitchhikers
Cited by: 40
Author(s): Dylan Lawrence, Megan T. Baldridge, Scott A. Handley
Software Mentions: 1
Published: over 5 years ago

10.3390/v13030455

Common Oral Medications Lead to Prophage Induction in Bacterial Isolates from the Human Gut
Cited by: 32
Author(s): Steven G. Sutcliffe, Michael Shamash, Alexander P. Hynes, Corinne F. Maurice
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.4057

Comparative analysis of prophages in Streptococcus mutans genomes
Cited by: 6
Author(s): Tiwei Fu, Xiangyu Fan, Quanxin Long, Wanyan Deng, Jinlin Song, Enyi Huang
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.985

VirSorter: mining viral signal from microbial genomic data
Cited by: 832
Author(s): Simon Roux, François Enault, Bonnie Hurwitz, Matthew B. Sullivan
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.9158

Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomics
Cited by: 2
Author(s): Danillo Oliveira Alvarenga, Márcia R. Franco, Kaarina Sivonen, Marli Fátima Fiore, Alessandro M. Varani
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0064285

Mechanistic Model of Rothia mucilaginosa Adaptation toward Persistence in the CF Lung, Based on a Genome Reconstructed from Metagenomic Data
Cited by: 48
Author(s): Yan Wei Lim, Robert Schmieder, Matthew Haynes, Mike Furlan, T. David Matthews, Katrine Whiteson, Stephen J. Poole, Christopher S. Hayes, David A. Low, Heather Maughan, Robert A. Edwards, Douglas Conrad, Forest Rohwer
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0126883

Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum
Cited by: 35
Author(s): T. David Matthews, Robert Schmieder, Genivaldo G. Z. Silva, Julia Busch, Noriko A. Cassman, Bas E. Dutilh, Dawn Green, Brian C. Matlock, Brian J. Heffernan, Gary J. Olsen, Leigh Farris Hanna, Dieter M. Schifferli, Stanley Maloy, Elizabeth A. Dinsdale, Robert A. Edwards
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0082985

Functional Environmental Screening of a Metagenomic Library Identifies stlA; A Unique Salt Tolerance Locus from the Human Gut Microbiome
Cited by: 29
Author(s): Eamonn P. Culligan, Roy D. Sleator, Julian R. Marchesi, Colin Hill
Software Mentions: 1
Published: about 11 years ago

10.3389/fcimb.2021.635597

Rekindling of a Masterful Precedent; Bacteriophage: Reappraisal and Future Pursuits
Cited by: 6
Author(s): Israa M. Abd-Allah, Ghadir S. El-Housseiny, Ibrahim S. Yahia, Khaled M. Aboshanab, Nadia A. Hassouna
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2018.00644

PhageWeb – Web Interface for Rapid Identification and Characterization of Prophages in Bacterial Genomes
Cited by: 28
Author(s): Ailton Lopes de Sousa, Dener Maués, Amália Raiana Fonseca Lobato, Edian F. Franco, Kenny C. Pinheiro, Fabrício Almeida Araújo, Yan Pantoja, Artur da Costa da Luiz Silva, Jefferson Morais, Rommel Thiago Jucá Ramos
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.664560

Reads Binning Improves the Assembly of Viral Genome Sequences From Metagenomic Samples
Cited by: 1
Author(s): Kai Song
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.01176

Comparative Genomics of Acinetobacter baumannii Clinical Strains From Brazil Reveals Polyclonal Dissemination and Selective Exchange of Mobile Genetic Elements Associated With Resistance Genes
Cited by: 24
Author(s): Nilma Cintra Leal, Túlio de Lima Campos, Antônio Mauro Rezende, Cássia Docena, Carina Lucena Mendes-Marques, Felipe Lira de Sá Cavalcanti, Gabriel Luz Wallau, Igor Vasconcelos Rocha, Carmelita L. B. Cavalcanti, Dyana Leal Veras, Lílian Rodrigues Alves, Mariana Andrade-Figueiredo, Maria Paloma Silva de Barros, Alzira Maria Paiva de Almeida, Márcia Maria Camargo de Morais, Tereza Cristina Leal-Balbino, Danilo Elias Xavier, Osvaldo P. de Melo Neto
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2014.00186

Bacteriophages of Leuconostoc, Oenococcus, and Weissella
Cited by: 51
Author(s): Witold Kot, Horst Neve, Knut J. Heller, Finn K. Vogensen
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2018.00835

Evolutionary History of Bacteriophages in the Genus Paraburkholderia
Cited by: 11
Author(s): Akbar Adjie Pratama, Maryam Chaib De Mares, Jan Dirk van Elsas
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.00138

May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot Pectobacteriaceae: Pectobacterium spp. and Dickeya spp.
Cited by: 25
Author(s): Robert Czajkowski
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.00559

Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of Omics
Cited by: 33
Author(s): Krupa Parmar, Saurabh L. Gaikwad, Prashant K. Dhakephalkar, Ramesh Kothari, Ravindra Singh
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.00102-17

Complete Genome Sequences of Two Phage-Like Plasmids Carrying the CTX-M-15 Extended-Spectrum β-Lactamase Gene
Cited by: 14
Author(s): Anna Colavecchio, Julie Jeukens, Luca Freschi, Jean-Guillaume Edmond Rheault, Iréna Kukavica-Ibrulj, Roger C. Levesque, Jeffrey T. LeJeune, Lawrence Goodridge
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.00110-17

AnCo3, a New Member of the Emerging Family of Phage-Like Plasmids
Cited by: 1
Author(s): Anna Colavecchio, Julie Jeukens, Luca Freschi, Jean-Guillaume Edmond Rheault, Iréna Kukavica-Ibrulj, Roger C. Levesque, Lawrence Goodridge
Software Mentions: 1
Published: over 7 years ago

Projects: pypi: PhiSpy

Papers Mentioning PhiSpy 66