pypi: javascript | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-81200-z

MuSA: a graphical user interface for multi-OMICs data integration in radiogenomic studies
Cited by: 11
Author(s): Mario Zanfardino, Rossana Castaldo, Katia Pane, Ornella Affinito, Marco Aiello, Marco Salvatore, Monica Franzese
Software Mentions: 15
Published: over 3 years ago

10.1186/1476-072X-11-41

Displaying R spatial statistics on Google dynamic maps with web applications created by Rwui
Cited by: 2
Author(s): Richard Newton, Andrew Deonarine, Lorenz Wernisch
Software Mentions: 14
Published: over 12 years ago

10.1371/journal.pone.0253010

Community evolution on Stack Overflow
Cited by: 11
Author(s): Iraklis Moutidis, Hywel T. P. Williams
Software Mentions: 10
Published: over 3 years ago

10.1186/s12859-018-2254-7

Netpredictor: R and Shiny package to perform drug-target network analysis and prediction of missing links
Cited by: 12
Author(s): Abhik Seal, David Wild
Software Mentions: 9
Published: about 6 years ago

10.1093/bioinformatics/btx738

PlanNET: homology-based predicted interactome for multiple planarian transcriptomes
Cited by: 17
Author(s): Sergio Castillo-Lara, Josep F. Abril
Software Mentions: 8
Published: almost 7 years ago

10.3389/fneur.2019.00331

Googling Boundaries for Operating Mobile Stroke Unit for Stroke Codes
Cited by: 7
Author(s): Thanh G. Phan, Richard Beare, Mark Parsons, Henry Zhao, Stephen M. Davis, Geoffrey A. Donnan, Velandai Srikanth, Henry Ma
Software Mentions: 8
Published: over 5 years ago

10.12688/f1000research.9618.2

biojs-io-biom, a BioJS component for handling data in Biological Observation Matrix (BIOM) format
Cited by: 2
Author(s): Markus J. Ankenbrand, Niklas Terhoeven, Sonja Hohlfeld, Frank Förster, Alexander Keller
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-021-88745-z

A Graph Theory approach to assess nature’s contribution to people at a global scale
Cited by: 13
Author(s): Sílvia de Juan, Andrés Ospina-Álvarez, Sebastián Villasante, Ana Ruiz‐Frau
Software Mentions: 7
Published: over 3 years ago

10.3389/frai.2020.00013

Designing and Evaluating the Usability of a Machine Learning API for Rapid Prototyping Music Technology
Cited by: 5
Author(s): Francisco Bernardo, Michael Zbyszyński, Mick Grierson, Rebecca Fiebrink
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2105-11-387

S3DB core: a framework for RDF generation and management in bioinformatics infrastructures
Cited by: 14
Author(s): Jonas S. Almeida, Helena F. Deus, Wolfgang Maaß
Software Mentions: 5
Published: about 14 years ago

10.1186/s12859-020-03632-0

Escher-Trace: a web application for pathway-based visualization of stable isotope tracing data
Cited by: 9
Author(s): Avi Kumar, Jack Mitchener, Zachary A. King, Christian M. Metallo
Software Mentions: 4
Published: about 4 years ago

10.1186/1471-2105-15-76

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
Cited by: 185
Author(s): Simon Roux, Jérémy Tournayre, Antoine Mahul, Didier Debroas, François Enault
Software Mentions: 4
Published: over 10 years ago

10.7554/eLife.56938

A flexible framework for simulating and fitting generalized drift-diffusion models
Cited by: 51
Author(s): Maxwell Shinn, Norman H Lam, John D. Murray
Software Mentions: 4
Published: about 4 years ago

10.1186/1471-2431-13-152

The swiss neonatal quality cycle, a monitor for clinical performance and tool for quality improvement
Cited by: 6
Author(s): Mark Adams, Tjade Claus Hoehre, Hans Ulrich Bucher
Software Mentions: 4
Published: almost 11 years ago

10.1186/1471-2164-14-209

MGcV: the microbial genomic context viewer for comparative genome analysis
Cited by: 50
Author(s): Lex Overmars, Robert Kerkhoven, Roland J. Siezen, Christof Francke
Software Mentions: 3
Published: over 11 years ago

10.3390/s19061433

Device Identification Interoperability in Heterogeneous IoT Platforms
Cited by: 27
Author(s): Ja-Hoon Koo, Se-Ra Oh, Young-Gab Kim
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-93495-z

The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalayas
Cited by: 6
Author(s): Tanvi Sharma, Nitesh Kumar Sharma, Prakash P. Kumar, Ganesh Panzade, Tanuja Rana, Mohit Kumar Swarnkar, Anil Kumar Singh, Dharam Singh, Ravi Shankar, Sanjay Kumar
Software Mentions: 3
Published: about 3 years ago

10.1186/1471-2105-7-431

The BiSearch web server
Cited by: 89
Author(s): Tamàs Arányi, András Váradi, István Simon, Gábor Tusnády
Software Mentions: 3
Published: almost 18 years ago

10.3389/fninf.2015.00023

Pycortex: an interactive surface visualizer for fMRI
Cited by: 98
Author(s): James Gao, Alexander G. Huth, Mark D. Lescroart, Jack L. Gallant
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0239883

SeqRepo: A system for managing local collections of biological sequences
Cited by: 6
Author(s): Reece K. Hart, Andreas Prlić
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12859-019-2935-x

Laboratory information management software for engineered mini-protein therapeutic workflow
Cited by: 0
Author(s): Mi-Youn Brusniak, Hector Ramos, Bernard T. Lee, James M. Olson
Software Mentions: 3
Published: over 5 years ago

10.3390/biom10111576

HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data
Cited by: 5
Author(s): Jeffrey Solomon, Fabian Kern, Tobias Fehlmann, Eckart Meese, Andreas Keller
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmolb.2016.00002

A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks
Cited by: 6
Author(s): Benjamin Merlet, Nils Paulhe, Florence Vinson, Clément Frainay, Maxime Chazalviel, Nathalie Poupin, Yoann Gloaguen, Franck Giacomoni, Fabien Jourdan
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2105-13-S4-S16

Intuitive representation of surface properties of biomolecules using BioBlender
Cited by: 59
Author(s): Raluca Andrei, Marco Callieri, Maria Francesca Zini, Tiziana Loni, Giuseppe Maraziti, Mike Pan, Monica Zoppè
Software Mentions: 3
Published: over 12 years ago

10.1186/1471-2148-10-8

BLAST-EXPLORER helps you building datasets for phylogenetic analysis
Cited by: 617
Author(s): Alexis Dereeper, Stéphane Audic, Jean‐Michel Claverie, Guillaume Blanc
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0126967

FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data
Cited by: 28
Author(s): Takuro Uchiyama, Masahiro Irie, Hiroshi Mori, Ken Kurokawa, Takuji Yamada
Software Mentions: 2
Published: over 9 years ago

10.1186/s12859-018-2573-8

CoExpresso: assess the quantitative behavior of protein complexes in human cells
Cited by: 7
Author(s): Morteza H. Chalabi, Vasileios Tsiamis, Lukas Käll, Fabio Vandin, Veit Schwämmle
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-9-245

Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites
Cited by: 63
Author(s): Neil F. W. Saunders, Ross I. Brinkworth, Thomas Huber, Bruce E. Kemp, Boštjan Kobe
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2105-9-S4-S4

Ontology-based, Tissue MicroArray oriented, image centered tissue bank
Cited by: 13
Author(s): Federica Viti, Ivan Merelli, Andrea Caprera, Barbara Lazzari, Alessandra Stella, Luciano Milanesi
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2105-8-168

BioPP: a tool for web-publication of biological networks
Cited by: 14
Author(s): Ganesh A. Viswanathan, German Nudelman, Sangita Patil, Stuart C. Sealfon
Software Mentions: 2
Published: over 17 years ago

10.1186/s12935-020-01591-3

BTG1 inhibits malignancy as a novel prognosis signature in endometrial carcinoma
Cited by: 8
Author(s): Yibing Li, Jianing Huo, Jiaxi He, Yunzheng Zhang, Xiaoxin Ma
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12936-017-1910-0

Health information system strengthening and malaria elimination in Papua New Guinea
Cited by: 17
Author(s): Alexander Rosewell, Leo Makita, David Muscatello, Lucy N. John, Sibauk Bieb, Ross Hutton, Sundar Ramamurthy, Phil Shearman
Software Mentions: 2
Published: about 7 years ago

10.12688/wellcomeopenres.14703.1

SPEKcheck — fluorescence microscopy spectral visualisation and optimisation: a web application, javascript library, and data resource
Cited by: 6
Author(s): Michael A. Phillips, David Miguel Susano Pinto, Ian M. Dobbie
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0106035

esyN: Network Building, Sharing and Publishing
Cited by: 52
Author(s): Daniel Bean, Joshua Heimbach, Lorenzo Ficorella, Gos Micklem, Stephen G. Oliver, Giorgio Favrin
Software Mentions: 2
Published: about 10 years ago

10.1016/j.dib.2019.104507

Client-side versus server-side geographic data processing performance comparison: Data and code
Cited by: 3
Author(s): Marcin Kulawiak
Software Mentions: 2
Published: almost 5 years ago

10.1093/database/bax069

IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes
Cited by: 0
Author(s): I-Man Ng, Jia-Hsin Huang, Shang-Chi Tsai, Huai-Kuang Tsai
Software Mentions: 2
Published: over 7 years ago

10.12688/f1000research.26872.2

Fiji plugins for qualitative image annotations: routine analysis and application to image classification
Cited by: 3
Author(s): Laurent S. V. Thomas, Franz Schaefer, Jochen Gehrig
Software Mentions: 2
Published: over 3 years ago

10.1016/j.jbef.2015.02.001

GIMS—Software for asset market experiments
Cited by: 27
Author(s): Stefan Palan
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-019-52359-3

A quantitative description of the transition between intuitive altruism and rational deliberation in iterated Prisoner’s Dilemma experiments
Cited by: 13
Author(s): Riccardo Gallotti, Jelena Grujić
Software Mentions: 2
Published: almost 5 years ago

10.1186/1476-072X-10-40

Mass casualty modelling: a spatial tool to support triage decision making
Cited by: 22
Author(s): Ofer Amram, Nadine Schuurman, S. Morad Hameed
Software Mentions: 2
Published: over 13 years ago

10.2196/resprot.2315

The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions
Cited by: 8
Author(s): Ben Vandervalk, Erin McCarthy, José Cruz-Toledo, Artjom Klein, Christopher J. O. Baker, Michel Dumontier, Mark D. Wilkinson
Software Mentions: 2
Published: over 11 years ago

10.2196/14160

Development of In-Browser Simulators for Medical Education: Introduction of a Novel Software Toolchain
Cited by: 10
Author(s): Jan Šilar, David Polák, Arnošt Mládek, Filip Ježek, Theodore W. Kurtz, Stephen E. DiCarlo, J Živný, Jiří Kofránek
Software Mentions: 2
Published: about 5 years ago

10.12688/f1000research.3-53.v3

wigExplorer, a BioJS component to visualise wig data
Cited by: 1
Author(s): Anil Thanki, Rafael C. Jiménez, Gemy Kaithakottil, Manuel Corpas, Robert P. Davey
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0224732

A novel wheat lodging resistance evaluation method and device based on the thrust force of the stalks
Cited by: 4
Author(s): Shuyi Feng, Dechuan Kong, Weihua Ding, Zhengang Ru, Li Gan, Liyuan Niu
Software Mentions: 1
Published: almost 5 years ago

10.3389/frai.2021.710856

Agent-Supported Peer Collaboration in MOOCs
Cited by: 2
Author(s): Στέργιος Τέγος, Apostolos Mavridis, Stavros Demetriadis
Software Mentions: 1
Published: about 3 years ago

10.3389/fendo.2018.00425

Molecular Mechanisms of Syndromic Cryptorchidism: Data Synthesis of 50 Studies and Visualization of Gene-Disease Network
Cited by: 9
Author(s): Kristian Urh, Živa Kolenc, Maj Hrovat, Luka Svet, Peter Dovč, Tanja Kunej
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2021.608313

Exploring the Differential Expression and Prognostic Significance of the COL11A1 Gene in Human Colorectal Carcinoma: An Integrated Bioinformatics Approach
Cited by: 18
Author(s): Ritwik Patra, Nabarun Chandra Das, Suprabhat Mukherjee
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0092831

Top-Down Proteomics with Mass Spectrometry Imaging: A Pilot Study towards Discovery of Biomarkers for Neurodevelopmental Disorders
Cited by: 37
Author(s): Hui Ye, Rakesh Mandal, Adam D. Catherman, Paul M. Thomas, Neil L. Kelleher, Chrysanthy Ikonomidou, Lingjun Li
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0012267

jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web
Cited by: 79
Author(s): Samuel A. Smits, Cleber C. Ouverney
Software Mentions: 1
Published: about 14 years ago

10.1186/s13030-016-0082-4

Risk assessment for job burnout with a mobile health web application using questionnaire data: a proof of concept study
Cited by: 13
Author(s): Roland von Känel, Marc van Nuffel, Walther J. Fuchs
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.25360

Modeling small cell lung cancer (SCLC) biology through deterministic and stochastic mathematical models
Cited by: 15
Author(s): Ravi Salgia, Isa Mambetsariev, Blake Hewelt, Srisairam Achuthan, Haiqing Li, Valeriy Poroyko, Yingyu Wang, Martin Sattler
Software Mentions: 1
Published: over 6 years ago

10.1002/jcp.28597

G Protein γ subunit 7 loss contributes to progression of clear cell renal cell carcinoma
Cited by: 25
Author(s): Shan Xu, Haibao Zhang, Tianjie Liu, Yule Chen, Dalin He, Lei Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s13321-017-0247-6

The CompTox Chemistry Dashboard: a community data resource for environmental chemistry
Cited by: 573
Author(s): Antony J. Williams, Christopher M. Grulke, Jeff Edwards, Andrew D. McEachran, Kamel Mansouri, Nancy C. Baker, Grace Patlewicz, Imran Shah, John F. Wambaugh, Richard S. Judson, Ann M. Richard
Software Mentions: 1
Published: almost 7 years ago

10.1017/cts.2020.501

Eight practices for data management to enable team data science
Cited by: 2
Author(s): Andrew McDavid, Anthony Corbett, Jennifer Dutra, Andrew G Straw, David J. Topham, Gloria S. Pryhuber, Mary T. Caserta, Steven R. Gill, Kristin Scheible, Jeanne Holden‐Wiltse
Software Mentions: 1
Published: about 4 years ago

10.1038/srep14987

Synthesis of an arrayed sgRNA library targeting the human genome
Cited by: 44
Author(s): Tobias Schmidt, Jonathan L. Schmid-Burgk, Veit Hornung
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12859-019-2748-y

Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium
Cited by: 5
Author(s): Wei Gu, Reha Yildirimman, E. Van Der Stuyft, Denny Verbeeck, Sascha Herzinger, Venkata Satagopam, Adriano Barbosa-Silva, Reinhard Schneider, Bodo Lange, Hans Lehrach, Yike Guo, David Henderson, Anthony Rowe
Software Mentions: 1
Published: over 5 years ago

10.1093/bioinformatics/btw643

Visualizing the geography of genetic variants
Cited by: 85
Author(s): Joseph Marcus, John Novembre
Software Mentions: 1
Published: almost 8 years ago

10.3758/s13428-014-0471-1

Presentation and response timing accuracy in Adobe Flash and HTML5/JavaScript Web experiments
Cited by: 119
Author(s): Stian Reimers, Neil Stewart
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-10-S3-S8

BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources
Cited by: 21
Author(s): Jeongheui Lim, Sang Yoon Kim, Sung-Min Kim, Hae-Seok Eo, Chang-Bae Kim, Woon Kee Paek, Won Kim, Jong Bhak
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-10-307

Hmrbase: a database of hormones and their receptors
Cited by: 31
Author(s): Mamoon Rashid, Deepak Singla, Arun Sharma, Manish Kumar, Gajendra P. S. Raghava
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0136783

Pulotu: Database of Austronesian Supernatural Beliefs and Practices
Cited by: 33
Author(s): Joseph Watts, Oliver Sheehan, Simon J. Greenhill, Stephanie Gomes-Ng, Quentin D. Atkinson, Joseph Bulbulia, Russell D. Gray
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0141563

TransNewGuinea.org: An Online Database of New Guinea Languages
Cited by: 14
Author(s): Simon J. Greenhill
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0206239

miRWalk: An online resource for prediction of microRNA binding sites
Cited by: 920
Author(s): Carsten Sticht, Carolina De La Torre, Alisha Parveen, Norbert Gretz
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-14-185

bioWeb3D: an online webGL 3D data visualisation tool
Cited by: 16
Author(s): Jean-Baptiste Pettit, John C. Marioni
Software Mentions: 1
Published: over 11 years ago

10.1093/database/bav048

GeneStoryTeller: a mobile app for quick and comprehensive information retrieval of human genes
Cited by: 0
Author(s): Stergiani V. Eleftheriou, Marilena M. Bourdakou, Emmanouil Athanasiadis, George M. Spyrou
Software Mentions: 1
Published: over 9 years ago

10.1107/S1600577520013958

Characterization of the Percival detector with soft X-rays
Cited by: 7
Author(s): A. Marras, Jonathan Correa, S. Lange, Vahagn Vardanyan, Tim Gerhardt, Manuela Kuhn, F. Kriváň, I. Shevyakov, M. Zimmer, Moritz Hoesch, Kai Bagschik, Frank Scholz, N. Guerrini, B. Marsh, I. Sedgwick, G. Cautero, D. Giuressi, Gregori Iztok, R. H. Menk, Martin Scarcia, L. Stebel, T. Nicholls, William F. Nichols, U. Pedersen, Polad M. Shikhaliev, N. Tartoni, H.J. Hyun, SeongHan Kim, KyungSook Kim, Seungyu Rah, A. Dawiec, F. Orsini, G. Pinaroli, A.L. Greer, S. Aplin, April D. Jewell, Todd J. Jones, Shouleh Nikzad, Michael E. Hoenk, Frank Okrent, H. Graafsma, C. Wunderer
Software Mentions: 1
Published: over 3 years ago

10.2196/27992

Clinical Utility and Functionality of an Artificial Intelligence–Based App to Predict Mortality in COVID-19: Mixed Methods Analysis
Cited by: 7
Author(s): Ahmed Abdulaal, Aatish Patel, Ahmed Al-Hindawi, Esmita Charani, Saleh A. Alqahtani, Gary Davies, Nabeela Mughal, Luke Moore
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0018851

Functional Cohesion of Gene Sets Determined by Latent Semantic Indexing of PubMed Abstracts
Cited by: 26
Author(s): Liangliang Xu, Nicholas A. Furlotte, Yunyue Lin, Kevin Heinrich, Michael W. Berry, E. Olusȩgun George, Ramin Homayouni
Software Mentions: 1
Published: over 13 years ago

Projects: pypi: javascript

Papers Mentioning javascript 68