Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: javascript
https://packages.ecosyste.ms/registries/pypi.org/packages/javascript
Call and interop Node.js APIs with Python
24 versions
Latest release: about 1 year ago
5 dependent packages
5,495 downloads last month
Papers Mentioning javascript 68
10.1038/s41598-021-81200-z
MuSA: a graphical user interface for multi-OMICs data integration in radiogenomic studiesCited by: 11
Author(s): Mario Zanfardino, Rossana Castaldo, Katia Pane, Ornella Affinito, Marco Aiello, Marco Salvatore, Monica Franzese
Software Mentions: 15
Published: almost 4 years ago
10.1186/1476-072X-11-41
Displaying R spatial statistics on Google dynamic maps with web applications created by RwuiCited by: 2
Author(s): Richard Newton, Andrew Deonarine, Lorenz Wernisch
Software Mentions: 14
Published: almost 13 years ago
10.1371/journal.pone.0253010
Community evolution on Stack OverflowCited by: 11
Author(s): Iraklis Moutidis, Hywel T. P. Williams
Software Mentions: 10
Published: over 3 years ago
10.1186/s12859-018-2254-7
Netpredictor: R and Shiny package to perform drug-target network analysis and prediction of missing linksCited by: 12
Author(s): Abhik Seal, David Wild
Software Mentions: 9
Published: over 6 years ago
10.1093/bioinformatics/btx738
PlanNET: homology-based predicted interactome for multiple planarian transcriptomesCited by: 17
Author(s): Sergio Castillo-Lara, Josep F. Abril
Software Mentions: 8
Published: almost 7 years ago
10.3389/fneur.2019.00331
Googling Boundaries for Operating Mobile Stroke Unit for Stroke CodesCited by: 7
Author(s): Thanh G. Phan, Richard Beare, Mark Parsons, Henry Zhao, Stephen M. Davis, Geoffrey A. Donnan, Velandai Srikanth, Henry Ma
Software Mentions: 8
Published: over 5 years ago
10.12688/f1000research.9618.2
biojs-io-biom, a BioJS component for handling data in Biological Observation Matrix (BIOM) formatCited by: 2
Author(s): Markus J. Ankenbrand, Niklas Terhoeven, Sonja Hohlfeld, Frank Förster, Alexander Keller
Software Mentions: 7
Published: almost 8 years ago
10.1038/s41598-021-88745-z
A Graph Theory approach to assess nature’s contribution to people at a global scaleCited by: 13
Author(s): Sílvia de Juan, Andrés Ospina-Álvarez, Sebastián Villasante, Ana Ruiz‐Frau
Software Mentions: 7
Published: over 3 years ago
10.3389/frai.2020.00013
Designing and Evaluating the Usability of a Machine Learning API for Rapid Prototyping Music TechnologyCited by: 5
Author(s): Francisco Bernardo, Michael Zbyszyński, Mick Grierson, Rebecca Fiebrink
Software Mentions: 5
Published: over 4 years ago
10.1186/1471-2105-11-387
S3DB core: a framework for RDF generation and management in bioinformatics infrastructuresCited by: 14
Author(s): Jonas S. Almeida, Helena F. Deus, Wolfgang Maaß
Software Mentions: 5
Published: over 14 years ago
10.1186/s12859-020-03632-0
Escher-Trace: a web application for pathway-based visualization of stable isotope tracing dataCited by: 9
Author(s): Avi Kumar, Jack Mitchener, Zachary A. King, Christian M. Metallo
Software Mentions: 4
Published: over 4 years ago
10.1186/1471-2105-15-76
Metavir 2: new tools for viral metagenome comparison and assembled virome analysisCited by: 185
Author(s): Simon Roux, Jérémy Tournayre, Antoine Mahul, Didier Debroas, François Enault
Software Mentions: 4
Published: over 10 years ago
10.7554/eLife.56938
A flexible framework for simulating and fitting generalized drift-diffusion modelsCited by: 51
Author(s): Maxwell Shinn, Norman H Lam, John D. Murray
Software Mentions: 4
Published: over 4 years ago
10.1186/1471-2431-13-152
The swiss neonatal quality cycle, a monitor for clinical performance and tool for quality improvementCited by: 6
Author(s): Mark Adams, Tjade Claus Hoehre, Hans Ulrich Bucher
Software Mentions: 4
Published: about 11 years ago
10.1186/1471-2164-14-209
MGcV: the microbial genomic context viewer for comparative genome analysisCited by: 50
Author(s): Lex Overmars, Robert Kerkhoven, Roland J. Siezen, Christof Francke
Software Mentions: 3
Published: almost 12 years ago
10.3390/s19061433
Device Identification Interoperability in Heterogeneous IoT PlatformsCited by: 27
Author(s): Ja-Hoon Koo, Se-Ra Oh, Young-Gab Kim
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-021-93495-z
The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from HimalayasCited by: 6
Author(s): Tanvi Sharma, Nitesh Kumar Sharma, Prakash P. Kumar, Ganesh Panzade, Tanuja Rana, Mohit Kumar Swarnkar, Anil Kumar Singh, Dharam Singh, Ravi Shankar, Sanjay Kumar
Software Mentions: 3
Published: over 3 years ago
10.1186/1471-2105-7-431
The BiSearch web serverCited by: 89
Author(s): Tamàs Arányi, András Váradi, István Simon, Gábor Tusnády
Software Mentions: 3
Published: about 18 years ago
10.3389/fninf.2015.00023
Pycortex: an interactive surface visualizer for fMRICited by: 98
Author(s): James Gao, Alexander G. Huth, Mark D. Lescroart, Jack L. Gallant
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.pone.0239883
SeqRepo: A system for managing local collections of biological sequencesCited by: 6
Author(s): Reece K. Hart, Andreas Prlić
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12859-019-2935-x
Laboratory information management software for engineered mini-protein therapeutic workflowCited by: 0
Author(s): Mi-Youn Brusniak, Hector Ramos, Bernard T. Lee, James M. Olson
Software Mentions: 3
Published: over 5 years ago
10.3390/biom10111576
HumiR: Web Services, Tools and Databases for Exploring Human microRNA DataCited by: 5
Author(s): Jeffrey Solomon, Fabian Kern, Tobias Fehlmann, Eckart Meese, Andreas Keller
Software Mentions: 3
Published: about 4 years ago
10.3389/fmolb.2016.00002
A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic NetworksCited by: 6
Author(s): Benjamin Merlet, Nils Paulhe, Florence Vinson, Clément Frainay, Maxime Chazalviel, Nathalie Poupin, Yoann Gloaguen, Franck Giacomoni, Fabien Jourdan
Software Mentions: 3
Published: almost 9 years ago
10.1186/1471-2105-13-S4-S16
Intuitive representation of surface properties of biomolecules using BioBlenderCited by: 59
Author(s): Raluca Andrei, Marco Callieri, Maria Francesca Zini, Tiziana Loni, Giuseppe Maraziti, Mike Pan, Monica Zoppè
Software Mentions: 3
Published: over 12 years ago
10.1186/1471-2148-10-8
BLAST-EXPLORER helps you building datasets for phylogenetic analysisCited by: 617
Author(s): Alexis Dereeper, Stéphane Audic, Jean‐Michel Claverie, Guillaume Blanc
Software Mentions: 3
Published: almost 15 years ago
10.1371/journal.pone.0126967
FuncTree: Functional Analysis and Visualization for Large-Scale Omics DataCited by: 28
Author(s): Takuro Uchiyama, Masahiro Irie, Hiroshi Mori, Ken Kurokawa, Takuji Yamada
Software Mentions: 2
Published: over 9 years ago
10.1186/s12859-018-2573-8
CoExpresso: assess the quantitative behavior of protein complexes in human cellsCited by: 7
Author(s): Morteza H. Chalabi, Vasileios Tsiamis, Lukas Käll, Fabio Vandin, Veit Schwämmle
Software Mentions: 2
Published: almost 6 years ago
10.1186/1471-2105-9-245
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sitesCited by: 63
Author(s): Neil F. W. Saunders, Ross I. Brinkworth, Thomas Huber, Bruce E. Kemp, Boštjan Kobe
Software Mentions: 2
Published: over 16 years ago
10.1186/1471-2105-9-S4-S4
Ontology-based, Tissue MicroArray oriented, image centered tissue bankCited by: 13
Author(s): Federica Viti, Ivan Merelli, Andrea Caprera, Barbara Lazzari, Alessandra Stella, Luciano Milanesi
Software Mentions: 2
Published: over 16 years ago
10.1186/1471-2105-8-168
BioPP: a tool for web-publication of biological networksCited by: 14
Author(s): Ganesh A. Viswanathan, German Nudelman, Sangita Patil, Stuart C. Sealfon
Software Mentions: 2
Published: over 17 years ago
10.1186/s12935-020-01591-3
BTG1 inhibits malignancy as a novel prognosis signature in endometrial carcinomaCited by: 8
Author(s): Yibing Li, Jianing Huo, Jiaxi He, Yunzheng Zhang, Xiaoxin Ma
Software Mentions: 2
Published: about 4 years ago
10.1186/s12936-017-1910-0
Health information system strengthening and malaria elimination in Papua New GuineaCited by: 17
Author(s): Alexander Rosewell, Leo Makita, David Muscatello, Lucy N. John, Sibauk Bieb, Ross Hutton, Sundar Ramamurthy, Phil Shearman
Software Mentions: 2
Published: over 7 years ago
10.12688/wellcomeopenres.14703.1
SPEKcheck — fluorescence microscopy spectral visualisation and optimisation: a web application, javascript library, and data resourceCited by: 6
Author(s): Michael A. Phillips, David Miguel Susano Pinto, Ian M. Dobbie
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0106035
esyN: Network Building, Sharing and PublishingCited by: 52
Author(s): Daniel Bean, Joshua Heimbach, Lorenzo Ficorella, Gos Micklem, Stephen G. Oliver, Giorgio Favrin
Software Mentions: 2
Published: about 10 years ago
10.1016/j.dib.2019.104507
Client-side versus server-side geographic data processing performance comparison: Data and codeCited by: 3
Author(s): Marcin Kulawiak
Software Mentions: 2
Published: about 5 years ago
10.1093/database/bax069
IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoesCited by: 0
Author(s): I-Man Ng, Jia-Hsin Huang, Shang-Chi Tsai, Huai-Kuang Tsai
Software Mentions: 2
Published: almost 8 years ago
10.12688/f1000research.26872.2
Fiji plugins for qualitative image annotations: routine analysis and application to image classificationCited by: 3
Author(s): Laurent S. V. Thomas, Franz Schaefer, Jochen Gehrig
Software Mentions: 2
Published: almost 4 years ago
10.1016/j.jbef.2015.02.001
GIMS—Software for asset market experimentsCited by: 27
Author(s): Stefan Palan
Software Mentions: 2
Published: over 9 years ago
10.1038/s41598-019-52359-3
A quantitative description of the transition between intuitive altruism and rational deliberation in iterated Prisoner’s Dilemma experimentsCited by: 13
Author(s): Riccardo Gallotti, Jelena Grujić
Software Mentions: 2
Published: about 5 years ago
10.1186/1476-072X-10-40
Mass casualty modelling: a spatial tool to support triage decision makingCited by: 22
Author(s): Ofer Amram, Nadine Schuurman, S. Morad Hameed
Software Mentions: 2
Published: over 13 years ago
10.2196/resprot.2315
The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug InteractionsCited by: 8
Author(s): Ben Vandervalk, Erin McCarthy, José Cruz-Toledo, Artjom Klein, Christopher J. O. Baker, Michel Dumontier, Mark D. Wilkinson
Software Mentions: 2
Published: over 11 years ago
10.2196/14160
Development of In-Browser Simulators for Medical Education: Introduction of a Novel Software ToolchainCited by: 10
Author(s): Jan Šilar, David Polák, Arnošt Mládek, Filip Ježek, Theodore W. Kurtz, Stephen E. DiCarlo, J Živný, Jiří Kofránek
Software Mentions: 2
Published: over 5 years ago
10.12688/f1000research.3-53.v3
wigExplorer, a BioJS component to visualise wig dataCited by: 1
Author(s): Anil Thanki, Rafael C. Jiménez, Gemy Kaithakottil, Manuel Corpas, Robert P. Davey
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0224732
A novel wheat lodging resistance evaluation method and device based on the thrust force of the stalksCited by: 4
Author(s): Shuyi Feng, Dechuan Kong, Weihua Ding, Zhengang Ru, Li Gan, Liyuan Niu
Software Mentions: 1
Published: about 5 years ago
10.3389/frai.2021.710856
Agent-Supported Peer Collaboration in MOOCsCited by: 2
Author(s): Στέργιος Τέγος, Apostolos Mavridis, Stavros Demetriadis
Software Mentions: 1
Published: about 3 years ago
10.3389/fendo.2018.00425
Molecular Mechanisms of Syndromic Cryptorchidism: Data Synthesis of 50 Studies and Visualization of Gene-Disease NetworkCited by: 9
Author(s): Kristian Urh, Živa Kolenc, Maj Hrovat, Luka Svet, Peter Dovč, Tanja Kunej
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2021.608313
Exploring the Differential Expression and Prognostic Significance of the COL11A1 Gene in Human Colorectal Carcinoma: An Integrated Bioinformatics ApproachCited by: 18
Author(s): Ritwik Patra, Nabarun Chandra Das, Suprabhat Mukherjee
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0092831
Top-Down Proteomics with Mass Spectrometry Imaging: A Pilot Study towards Discovery of Biomarkers for Neurodevelopmental DisordersCited by: 37
Author(s): Hui Ye, Rakesh Mandal, Adam D. Catherman, Paul M. Thomas, Neil L. Kelleher, Chrysanthy Ikonomidou, Lingjun Li
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0012267
jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the WebCited by: 79
Author(s): Samuel A. Smits, Cleber C. Ouverney
Software Mentions: 1
Published: over 14 years ago
10.1186/s13030-016-0082-4
Risk assessment for job burnout with a mobile health web application using questionnaire data: a proof of concept studyCited by: 13
Author(s): Roland von Känel, Marc van Nuffel, Walther J. Fuchs
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.25360
Modeling small cell lung cancer (SCLC) biology through deterministic and stochastic mathematical modelsCited by: 15
Author(s): Ravi Salgia, Isa Mambetsariev, Blake Hewelt, Srisairam Achuthan, Haiqing Li, Valeriy Poroyko, Yingyu Wang, Martin Sattler
Software Mentions: 1
Published: over 6 years ago
10.1002/jcp.28597
G Protein γ subunit 7 loss contributes to progression of clear cell renal cell carcinomaCited by: 25
Author(s): Shan Xu, Haibao Zhang, Tianjie Liu, Yule Chen, Dalin He, Lei Li
Software Mentions: 1
Published: over 5 years ago
10.1186/s13321-017-0247-6
The CompTox Chemistry Dashboard: a community data resource for environmental chemistryCited by: 573
Author(s): Antony J. Williams, Christopher M. Grulke, Jeff Edwards, Andrew D. McEachran, Kamel Mansouri, Nancy C. Baker, Grace Patlewicz, Imran Shah, John F. Wambaugh, Richard S. Judson, Ann M. Richard
Software Mentions: 1
Published: almost 7 years ago
10.1017/cts.2020.501
Eight practices for data management to enable team data scienceCited by: 2
Author(s): Andrew McDavid, Anthony Corbett, Jennifer Dutra, Andrew G Straw, David J. Topham, Gloria S. Pryhuber, Mary T. Caserta, Steven R. Gill, Kristin Scheible, Jeanne Holden‐Wiltse
Software Mentions: 1
Published: over 4 years ago
10.1038/srep14987
Synthesis of an arrayed sgRNA library targeting the human genomeCited by: 44
Author(s): Tobias Schmidt, Jonathan L. Schmid-Burgk, Veit Hornung
Software Mentions: 1
Published: about 9 years ago
10.1186/s12859-019-2748-y
Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortiumCited by: 5
Author(s): Wei Gu, Reha Yildirimman, E. Van Der Stuyft, Denny Verbeeck, Sascha Herzinger, Venkata Satagopam, Adriano Barbosa-Silva, Reinhard Schneider, Bodo Lange, Hans Lehrach, Yike Guo, David Henderson, Anthony Rowe
Software Mentions: 1
Published: over 5 years ago
10.1093/bioinformatics/btw643
Visualizing the geography of genetic variantsCited by: 85
Author(s): Joseph Marcus, John Novembre
Software Mentions: 1
Published: about 8 years ago
10.3758/s13428-014-0471-1
Presentation and response timing accuracy in Adobe Flash and HTML5/JavaScript Web experimentsCited by: 119
Author(s): Stian Reimers, Neil Stewart
Software Mentions: 1
Published: over 10 years ago
10.1186/1471-2164-10-S3-S8
BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resourcesCited by: 21
Author(s): Jeongheui Lim, Sang Yoon Kim, Sung-Min Kim, Hae-Seok Eo, Chang-Bae Kim, Woon Kee Paek, Won Kim, Jong Bhak
Software Mentions: 1
Published: almost 15 years ago
10.1186/1471-2164-10-307
Hmrbase: a database of hormones and their receptorsCited by: 31
Author(s): Mamoon Rashid, Deepak Singla, Arun Sharma, Manish Kumar, Gajendra P. S. Raghava
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0136783
Pulotu: Database of Austronesian Supernatural Beliefs and PracticesCited by: 33
Author(s): Joseph Watts, Oliver Sheehan, Simon J. Greenhill, Stephanie Gomes-Ng, Quentin D. Atkinson, Joseph Bulbulia, Russell D. Gray
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0141563
TransNewGuinea.org: An Online Database of New Guinea LanguagesCited by: 14
Author(s): Simon J. Greenhill
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0206239
miRWalk: An online resource for prediction of microRNA binding sitesCited by: 920
Author(s): Carsten Sticht, Carolina De La Torre, Alisha Parveen, Norbert Gretz
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2105-14-185
bioWeb3D: an online webGL 3D data visualisation toolCited by: 16
Author(s): Jean-Baptiste Pettit, John C. Marioni
Software Mentions: 1
Published: over 11 years ago
10.1093/database/bav048
GeneStoryTeller: a mobile app for quick and comprehensive information retrieval of human genesCited by: 0
Author(s): Stergiani V. Eleftheriou, Marilena M. Bourdakou, Emmanouil Athanasiadis, George M. Spyrou
Software Mentions: 1
Published: almost 10 years ago
10.1107/S1600577520013958
Characterization of the Percival detector with soft X-raysCited by: 7
Author(s): A. Marras, Jonathan Correa, S. Lange, Vahagn Vardanyan, Tim Gerhardt, Manuela Kuhn, F. Kriváň, I. Shevyakov, M. Zimmer, Moritz Hoesch, Kai Bagschik, Frank Scholz, N. Guerrini, B. Marsh, I. Sedgwick, G. Cautero, D. Giuressi, Gregori Iztok, R. H. Menk, Martin Scarcia, L. Stebel, T. Nicholls, William F. Nichols, U. Pedersen, Polad M. Shikhaliev, N. Tartoni, H.J. Hyun, SeongHan Kim, KyungSook Kim, Seungyu Rah, A. Dawiec, F. Orsini, G. Pinaroli, A.L. Greer, S. Aplin, April D. Jewell, Todd J. Jones, Shouleh Nikzad, Michael E. Hoenk, Frank Okrent, H. Graafsma, C. Wunderer
Software Mentions: 1
Published: almost 4 years ago
10.2196/27992
Clinical Utility and Functionality of an Artificial Intelligence–Based App to Predict Mortality in COVID-19: Mixed Methods AnalysisCited by: 7
Author(s): Ahmed Abdulaal, Aatish Patel, Ahmed Al-Hindawi, Esmita Charani, Saleh A. Alqahtani, Gary Davies, Nabeela Mughal, Luke Moore
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0018851
Functional Cohesion of Gene Sets Determined by Latent Semantic Indexing of PubMed AbstractsCited by: 26
Author(s): Liangliang Xu, Nicholas A. Furlotte, Yunyue Lin, Kevin Heinrich, Michael W. Berry, E. Olusȩgun George, Ramin Homayouni
Software Mentions: 1
Published: over 13 years ago