Ecosyste.ms: Papers

10.3389/fninf.2014.00014

Machine learning for neuroimaging with scikit-learn
Cited by: 1,186
Author(s): A. Alexandre, Fabián Pedregosa, Michael Eickenberg, Philippe Gervais, Andreas Mueller, Jean Kossaifi, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux
Software Mentions: 8
Published: almost 11 years ago

10.3389/fninf.2016.00027

CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU Octave
Cited by: 386
Author(s): Nikolaas N. Oosterhof, Andrew C. Connolly, James V. Haxby
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pcbi.1008457

Searching through functional space reveals distributed visual, auditory, and semantic coding in the human brain
Cited by: 4
Author(s): Sreejan Kumar, Cameron T. Ellis, Thomas O’Connell, Marvin M. Chun, Nicholas B. Turk‐Browne
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-017-12559-1

The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception
Cited by: 75
Author(s): Matteo Visconti di Oleggio Castello, Yaroslav O. Halchenko, J. Swaroop Guntupalli, Jason Gors, M. Ida Gobbini
Software Mentions: 5
Published: about 7 years ago

10.3389/fnins.2019.01321

Analyzing Neuroimaging Data Through Recurrent Deep Learning Models
Cited by: 63
Author(s): Armin W. Thomas, Hauke R. Heekeren, Klaus Robert Müller, Wojciech Samek
Software Mentions: 4
Published: almost 5 years ago

10.1093/cercor/bhx138

Attention Selectively Reshapes the Geometry of Distributed Semantic Representation
Cited by: 87
Author(s): Samuel A. Nastase, Andrew C. Connolly, Nikolaas N. Oosterhof, Yaroslav O. Halchenko, J. Swaroop Guntupalli, Matteo Visconti di Oleggio Castello, Jason Gors, M. Ida Gobbini, James V. Haxby
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.31873

Integrative and distinctive coding of visual and conceptual object features in the ventral visual stream
Cited by: 129
Author(s): Chris B. Martin, Danielle Douglas, Rachel N. Newsome, Louisa Ly Man, Morgan D. Barense
Software Mentions: 4
Published: almost 7 years ago

10.3389/fninf.2014.00090

Automatic analysis (aa): efficient neuroimaging workflows and parallel processing using Matlab and XML
Cited by: 91
Author(s): Rhodri Cusack, Alejandro Vicente-Grabovetsky, D. N. Mitchell, Conor Wild, Tibor Auer, Annika C. Linke, Jonathan E. Peelle
Software Mentions: 4
Published: almost 10 years ago

10.1093/cercor/bhv136

Hierarchical Organization of Auditory and Motor Representations in Speech Perception: Evidence from Searchlight Similarity Analysis
Cited by: 111
Author(s): Samuel Evans, Matthew H. Davis
Software Mentions: 3
Published: over 9 years ago

10.1523/JNEUROSCI.0392-21.2021

Medial Frontal Cortex Activity Predicts Information Sampling in Economic Choice
Cited by: 10
Author(s): Paula Kaanders, Hamed Nili, Jill X. O’Reilly, Laurence T. Hunt
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.63551

Temporo-parietal cortex involved in modeling one’s own and others’ attention
Cited by: 10
Author(s): Arvid Guterstam, Branden J. Bio, Andrew I. Wilterson, Michael S. A. Graziano
Software Mentions: 3
Published: over 3 years ago

10.3389/fnhum.2021.665319

Functional Brain Connectivity During Narrative Processing Relates to Transportation and Story Influence
Cited by: 3
Author(s): A. Vaccaro, Brandon G. Scott, Sarah I. Gimbel, Jonas Kaplan
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-55887-0

Outcome contingency selectively affects the neural coding of outcomes but not of tasks
Cited by: 4
Author(s): David Wisniewski, Birte U. Forstmann, Marcel Braß
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-28865-1

Integrated deep visual and semantic attractor neural networks predict fMRI pattern-information along the ventral object processing pathway
Cited by: 66
Author(s): Barry Devereux, Alex Clarke, Lorraine K. Tyler
Software Mentions: 3
Published: over 6 years ago

10.3389/fninf.2014.00088

The Decoding Toolbox (TDT): a versatile software package for multivariate analyses of functional imaging data
Cited by: 257
Author(s): Martin N. Hebart, Kai Görgen, John­–Dylan Haynes
Software Mentions: 3
Published: almost 10 years ago

10.3389/fnins.2020.00545

MVPANI: A Toolkit With Friendly Graphical User Interface for Multivariate Pattern Analysis of Neuroimaging Data
Cited by: 25
Author(s): Yanmin Peng, Xi Zhang, Yifan Li, Qian Su, Sijia Wang, Feng Liu, Chunshui Yu, Meng Liang
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.23232

Dynamic modulation of decision biases by brainstem arousal systems
Cited by: 206
Author(s): Jan Willem de Gee, Olympia Colizoli, Niels A. Kloosterman, Tomas Knapen, Sander Nieuwenhuis, Tobias H. Donner
Software Mentions: 3
Published: over 7 years ago

10.1523/JNEUROSCI.3064-19.2020

Roles of Category, Shape, and Spatial Frequency in Shaping Animal and Tool Selectivity in the Occipitotemporal Cortex
Cited by: 10
Author(s): Chenxi He, Shao Chin Hung, Olivia S. Cheung
Software Mentions: 2
Published: over 4 years ago

10.1007/s00429-020-02124-4

Properties and temporal dynamics of choice- and action-predictive signals during item recognition decisions
Cited by: 4
Author(s): Roberto Guidotti, Annalisa Tosoni, Carlo Sestieri
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0198806

Information spreading by a combination of MEG source estimation and multivariate pattern classification
Cited by: 21
Author(s): Masashi Sato, Okito Yamashita, Masa‐aki Sato, Yoichi Miyawaki
Software Mentions: 2
Published: over 6 years ago

10.1016/j.cub.2020.07.066

Pain Control by Co-adaptive Learning in a Brain-Machine Interface
Cited by: 26
Author(s): Suyi Zhang, Wako Yoshida, Hiroaki Matsubara, Takufumi Yanagisawa, Flavia Mancini, Kazuhisa Shibata, Mitsuo Kawato, Ben Seymour
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0081009

Decoding Humor Experiences from Brain Activity of People Viewing Comedy Movies
Cited by: 12
Author(s): Yasuhito Sawahata, Kazuteru Komine, Toshiya Morita, Nobuyuki Hiruma
Software Mentions: 2
Published: almost 11 years ago

10.3389/fpsyg.2017.01179

Music of the 7Ts: Predicting and Decoding Multivoxel fMRI Responses with Acoustic, Schematic, and Categorical Music Features
Cited by: 23
Author(s): Michael A. Casey
Software Mentions: 2
Published: over 7 years ago

10.1093/cercor/bhx056

Vocal Tract Images Reveal Neural Representations of Sensorimotor Transformation During Speech Imitation
Cited by: 18
Author(s): Daniel Carey, Marc E. Miquel, Bronwen G. Evans, Patti Adank, Carolyn McGettigan
Software Mentions: 2
Published: over 7 years ago

10.1186/2047-217X-3-28

How machine learning is shaping cognitive neuroimaging
Cited by: 101
Author(s): Gaël Varoquaux, Bertrand Thirion
Software Mentions: 2
Published: almost 10 years ago

10.1002/hbm.24944

A heuristic information cluster search approach for precise functional brain mapping
Cited by: 2
Author(s): Nima Asadi, Yin Wang, Ingrid R. Olson, Zoran Obradović
Software Mentions: 2
Published: over 4 years ago

10.1073/pnas.1818575116

Mapping visual symbols onto spoken language along the ventral visual stream
Cited by: 34
Author(s): Joanne Taylor, Matthew H. Davis, Kathleen Rastle
Software Mentions: 2
Published: about 5 years ago

10.1098/rsos.172208

How does human motor cortex regulate vocal pitch in singers?
Cited by: 7
Author(s): Michel Belyk, Yune-Sang Lee, Steven Brown
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-13938-4

Reinstatement of memory representations for lifelike events over the course of a week
Cited by: 52
Author(s): Christiane Oedekoven, James L. Keidel, Sam C. Berens, Chris M. Bird
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-35018-x

Exploring representations of human grasping in neural, muscle and kinematic signals
Cited by: 26
Author(s): Andreea Ioana Sburlea, Gernot Müller-Putz
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0145350

Is Brain Activity during Action Observation Modulated by the Perceived Fairness of the Actor?
Cited by: 11
Author(s): Joset A. Etzel, Nikola Valchev, Valeria Gazzola, Christian Keysers
Software Mentions: 2
Published: almost 9 years ago

10.3389/fnhum.2015.00421

Basal ganglia and cortical networks for sequential ordering and rhythm of complex movements
Cited by: 21
Author(s): Jeffery G. Bednark, Megan E. J. Campbell, Ross Cunnington
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.36329

Ultra-Rapid serial visual presentation reveals dynamics of feedforward and feedback processes in the ventral visual pathway
Cited by: 80
Author(s): Yalda Mohsenzadeh, Sheng Qin, Radoslaw Martin Cichy, Dimitrios Pantazis
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pbio.3001241

The human visual system differentially represents subjectively and objectively invisible stimuli
Cited by: 22
Author(s): Timo Stein, Daniel Kaiser, Johannes J. Fahrenfort, Simon van Gaal
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.44111

Fixation-pattern similarity analysis reveals adaptive changes in face-viewing strategies following aversive learning
Cited by: 4
Author(s): Lea Kampermann, Niklas Wilming, Arjen Alink, Christian Büchel, Selim Onat
Software Mentions: 2
Published: about 5 years ago

10.3389/fnhum.2018.00419

Abstract Representations of Emotions Perceived From the Face, Body, and Whole-Person Expressions in the Left Postcentral Gyrus
Cited by: 18
Author(s): Linjing Cao, Junhai Xu, Xiaoli Yang, Xianglin Li, Baolin Liu
Software Mentions: 2
Published: about 6 years ago

10.1523/ENEURO.0008-15.2015

Flexible Reference Frames for Grasp Planning in Human Parietofrontal Cortex
Cited by: 20
Author(s): Frank T. Leone, Simona Monaco, Denise Y. P. Henriques, Ivan Toni, W. Pieter Medendorp
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.3001374

Olfactory perceptual decision-making is biased by motivational state
Cited by: 13
Author(s): Laura K. Shanahan, Surabhi Bhutani, Thorsten Kahnt
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pcbi.1005799

Multivariate pattern dependence
Cited by: 38
Author(s): Stefano Anzellotti, Alfonso Caramazza, Rebecca Saxe
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0129777

Decoding Accuracy in Supplementary Motor Cortex Correlates with Perceptual Sensitivity to Tactile Roughness
Cited by: 20
Author(s): Junsuk Kim, Yoon Young Chung, Jang Yeon Park, Soon Cheol Chung, Christian Wallraven, HH Bülthoff, Sung Phil Kim
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0046809

Interpersonal Liking Modulates Motor-Related Neural Regions
Cited by: 15
Author(s): Mona Sobhani, Glenn R. Fox, Jonas Kaplan, Lisa Aziz‐Zadeh
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0161589

Identifying Core Affect in Individuals from fMRI Responses to Dynamic Naturalistic Audiovisual Stimuli
Cited by: 14
Author(s): Jongwan Kim, Jing Wang, Douglas H. Wedell, Svetlana V. Shinkareva
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0069566

Smoothness without Smoothing: Why Gaussian Naive Bayes Is Not Naive for Multi-Subject Searchlight Studies
Cited by: 38
Author(s): Rajeev D. S. Raizada, Yune-Sang Lee
Software Mentions: 1
Published: over 11 years ago

10.1038/s42003-018-0243-z

Representations of time in human frontoparietal cortex
Cited by: 30
Author(s): Masamichi J. Hayashi, Wietske van der Zwaag, Domenica Bueti, Ryota Kanai
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-019-0740-8

Mental models use common neural spatial structure for spatial and abstract content
Cited by: 13
Author(s): Katherine L. Alfred, Andrew C. Connolly, Joshua S. Cetron, David J. M. Kraemer
Software Mentions: 1
Published: almost 5 years ago

10.1155/2013/645921

Principal Feature Analysis: A Multivariate Feature Selection Method for fMRI Data
Cited by: 11
Author(s): Lijun Wang, Lei Yu, Ying Zeng, Tong Li, Bin Yan
Software Mentions: 1
Published: almost 12 years ago

10.1155/2012/961257

Multivoxel Pattern Analysis for fMRI Data: A Review
Cited by: 137
Author(s): Abdelhak Mahmoudi, Sylvain Takerkart, Fakhita Regragui, Driss Boussaoud, Andrea Brovelli
Software Mentions: 1
Published: almost 13 years ago

10.3389/fnagi.2013.00093

A single nucleotide polymorphism associated with reduced alcohol intake in the RASGRF2 gene predicts larger cortical volumes but faster longitudinal ventricular expansion in the elderly
Cited by: 6
Author(s): Florence F. Roussotte, Boris A. Gutman, Derrek P. Hibar, Neda Jahanshad, Sarah K. Madsen, Clifford R. Jack, Michael W. Weiner, Paul M. Thompson
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnhum.2015.00327

Accurately decoding visual information from fMRI data obtained in a realistic virtual environment
Cited by: 14
Author(s): Andrew Floren, Bruce Naylor, Risto Miikkulainen, David Ress
Software Mentions: 1
Published: over 9 years ago

10.3389/fnhum.2014.01070

Distributed functions of detection and discrimination of vibrotactile stimuli in the hierarchical human somatosensory system
Cited by: 21
Author(s): Junsuk Kim, Klaus Robert Müller, Yoon Young Chung, Soon Cheol Chung, Jang Yeon Park, HH Bülthoff, Sung Phil Kim
Software Mentions: 1
Published: almost 10 years ago

10.3389/fnhum.2013.00075

Dissociable circuits for visual shape learning in the young and aging human brain
Cited by: 11
Author(s): Stephen D. Mayhew, Zoe Kourtzi
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnhum.2015.00492

Neural regions discriminating contextual information as conveyed through the learned preferences of others
Cited by: 1
Author(s): Su Mei Lee, Gregory McCarthy
Software Mentions: 1
Published: about 9 years ago

10.3389/fnhum.2017.00445

Neural Activity Patterns in the Human Brain Reflect Tactile Stickiness Perception
Cited by: 11
Author(s): Junsuk Kim, Jiwon Yeon, JaeKyun Ryu, Jang‐Yeon Park, Soon−Cheol Chung, Sung-Phil Kim
Software Mentions: 1
Published: about 7 years ago

10.3389/fnint.2020.00019

Cortical Representation of Tactile Stickiness Evoked by Skin Contact and Glove Contact
Cited by: 1
Author(s): Junsuk Kim, I Bülthoff, Heinrich H. Bülthoff
Software Mentions: 1
Published: over 4 years ago

10.3389/fnins.2020.616906

Searchlight Classification Informative Region Mixture Model (SCIM): Identification of Cortical Regions Showing Discriminable BOLD Patterns in Event-Related Auditory fMRI Data
Cited by: 2
Author(s): Annika Urbschat, Stefan Uppenkamp, Jörn Anemüller
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnins.2013.00265

Decoding of single-trial auditory mismatch responses for online perceptual monitoring and neurofeedback
Cited by: 8
Author(s): Alex Brandmeyer, Makiko Sadakata, Loukianos Spyrou, James M. McQueen, Peter Desain
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnins.2017.00543

Classical Statistics and Statistical Learning in Imaging Neuroscience
Cited by: 111
Author(s): Danilo Bzdok
Software Mentions: 1
Published: about 7 years ago

10.3389/fpsyg.2014.00672

The neural mechanisms for the recognition of face identity in humans
Cited by: 33
Author(s): Stefano Anzellotti
Software Mentions: 1
Published: over 10 years ago

10.3389/fnsys.2020.600601

Stimulus Feature-Specific Information Flow Along the Columnar Cortical Microcircuit Revealed by Multivariate Laminar Spiking Analysis
Cited by: 9
Author(s): David A. Tovar, Jacob A. Westerberg, Michele A. Cox, Kacie Dougherty, Thomas A. Carlson, Mark T. Wallace, Alexander Maier
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-37429-2

Temporal dynamics of access to amodal representations of category-level conceptual information
Cited by: 14
Author(s): Elisa Leonardelli, Elisa Fait, Scott L. Fairhall
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-62071-2

Hyperalignment of motor cortical areas based on motor imagery during action observation
Cited by: 8
Author(s): Salim Al-Wasity, Stefan Vogt, Aleksandra Vučković, Frank E. Pollick
Software Mentions: 1
Published: over 4 years ago

10.1093/scan/nsab010

Multivariate spatial feature selection in fMRI
Cited by: 10
Author(s): Eshin Jolly, Luke J. Chang
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.56929

Empathic pain evoked by sensory and emotional-communicative cues share common and process-specific neural representations
Cited by: 60
Author(s): Feng Zhou, Jialin Li, Weihua Zhao, Xu Lei, Xiaoxiao Zheng, Meina Fu, Shuxia Yao, Keith M. Kendrick, Tor D. Wager, Benjamin Becker
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.55241

A critical re-evaluation of fMRI signatures of motor sequence learning
Cited by: 46
Author(s): Eva Berlot, Nicola J. Popp, Jörn Diedrichsen
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.16534

An event map of memory space in the hippocampus
Cited by: 171
Author(s): Lorena Deuker, Jacob L. S. Bellmund, Tobias Navarro Schröder, Christian F. Doeller
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.03043

Human premotor areas parse sequences into their spatial and temporal features
Cited by: 80
Author(s): Katja Kornysheva, Jörn Diedrichsen
Software Mentions: 1
Published: about 10 years ago

10.1167/19.7.16

Subtle predictive movements reveal actions regardless of social context
Cited by: 6
Author(s): Emalie McMahon, Charles Zheng, Francisco Pereira, Ray González, Leslie G. Ungerleider, Maryam Vaziri-Pashkam
Software Mentions: 1
Published: over 5 years ago

10.1523/ENEURO.0039-21.2021

Modulations of Depth Responses in the Human Brain by Object Context: Does Biological Relevance Matter?
Cited by: 3
Author(s): Idy Wing Yi Chou, Hiroshi Ban
Software Mentions: 1
Published: over 3 years ago

10.1523/ENEURO.0177-18.2018

Evidence against the Detectability of a Hippocampal Place Code Using Functional Magnetic Resonance Imaging
Cited by: 8
Author(s): Christopher Raymond Nolan, Joyce M. G. Vromen, Allen Cheung, Oliver Baumann
Software Mentions: 1
Published: over 6 years ago