Packages with Software Mentions in Scientific Papers

This project is to fetch data from the official Silverlight application of Ministry of Environmental Protection of China (http://106.37.208.233:20035/), which publish realtime air quality. 本项目旨在方便地获取官方发布的中国空气质量数据。
Papers that mentioned: 10

Very Likely Science (65)

cran: RJSONIO

Serialize R Objects to JSON, JavaScript Object Notation
Papers that mentioned: 10

Very Likely Science (75)

pypi: Argot

argot text markup -- a markdown dialect
Papers that mentioned: 10

Very Likely Science (65)

pypi: jl

Library for parsing JSON lines.
Papers that mentioned: 10

Very Likely Science (65)

cran: PurBayes

Bayesian Estimation of Tumor Purity and Clonality
Papers that mentioned: 10

Very Likely Science (85)

cran: QGglmm

Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models
Papers that mentioned: 10

Very Likely Science (100)

pypi: bx-python

Tools for manipulating biological data, particularly multiple sequence alignments
Papers that mentioned: 10

Very Likely Science (100)

pypi: andi

Library for annotation-based dependency injection
Papers that mentioned: 10

Very Likely Science (80)

bioconductor: goProfiles

goProfiles: an R package for the statistical analysis of functional profiles
Papers that mentioned: 10

Very Likely Science (100)

cran: denovolyzeR

Statistical Analyses of De Novo Genetic Variants
Papers that mentioned: 10

Very Likely Science (93)

pypi: SVC

Spreadsheet Viewer and Converter
Papers that mentioned: 10

Very Likely Science (65)

pypi: Cartopy

A Python library for cartographic visualizations with Matplotlib
Papers that mentioned: 10

Very Likely Science (90)

cran: catR

Generation of IRT Response Patterns under Computerized Adaptive Testing
Papers that mentioned: 10

Very Likely Science (75)

pypi: pacman

Initially, a tool for introspecting and analysing sys.path
Papers that mentioned: 10

Very Likely Science (65)

cran: HaploSim

Functions to Simulate Haplotypes
Papers that mentioned: 10

Very Likely Science (75)

cran: morpheus

Estimate Parameters of Mixtures of Logistic Regressions
Papers that mentioned: 10

Very Likely Science (85)

cran: edgeRun

More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
Papers that mentioned: 10

Very Likely Science (85)

pypi: bam

Text snippets on the command line.
Papers that mentioned: 10

Very Likely Science (65)

pypi: docker-compose

Multi-container orchestration for Docker
Papers that mentioned: 10

Very Likely Science (85)

pypi: fc

Enables Python to be functionally chain-styled.
Papers that mentioned: 10

Very Likely Science (65)

cran: lightgbm

Light Gradient Boosting Machine
Papers that mentioned: 10

Very Likely Science (100)

bioconductor: compEpiTools

Tools for computational epigenomics
Papers that mentioned: 10

Very Likely Science (100)

pypi: amira

Automated Malware Incident Response and Analysis
Papers that mentioned: 10

Very Likely Science (75)

cran: digest

Create Compact Hash Digests of R Objects
Papers that mentioned: 10

Very Likely Science (100)

cran: chron

Chronological Objects which Can Handle Dates and Times
Papers that mentioned: 10

Likely Science (50)

cran: MVB

Mutivariate Bernoulli log-linear model
Papers that mentioned: 10

Very Likely Science (75)

pypi: updog

Updog is a replacement for Python's SimpleHTTPServer. It allows uploading and downloading via HTTP/S, can set ad hoc SSL certificates and use http basic auth.
Papers that mentioned: 10

Very Likely Science (65)

pypi: Trellis

A simple "untwisted" approach to event-driven programming
Papers that mentioned: 10

Very Likely Science (65)

pypi: tidytree

manager directories
Papers that mentioned: 10

Very Likely Science (65)

bioconductor: Harman

The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Papers that mentioned: 10

Very Likely Science (98)

cran: enviPat

Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
Papers that mentioned: 10

Very Likely Science (75)

pypi: logistic

A dead-simple logistic regression library.
Papers that mentioned: 10

Very Likely Science (90)

pypi: DeepCell

Deep learning for single cell image segmentation
Papers that mentioned: 10

Very Likely Science (100)

cran: pack

Convert values to/from raw vectors
Papers that mentioned: 10

Very Likely Science (75)

pypi: genorm

GenORM (simple functional MySQL/PostgreSQL ORM)
Papers that mentioned: 10

Very Likely Science (65)

pypi: Aphid

A toolkit for working with nested data types
Papers that mentioned: 10

Very Likely Science (65)

pypi: delta

Human friendly context aware duration parsing library
Papers that mentioned: 10

Very Likely Science (65)

pypi: digest

Calculate message digests of files or standard input
Papers that mentioned: 10

Very Likely Science (65)

cran: OSTE

Optimal Survival Trees Ensemble
Papers that mentioned: 10

Very Likely Science (83)

pypi: sda

A wrapper for Selenium. This library uses custom data attributes to accelerate testing through the Selenium framework
Papers that mentioned: 10

Likely Science (40)

cran: QFASA

Quantitative Fatty Acid Signature Analysis
Papers that mentioned: 10

Very Likely Science (85)

pypi: decipher

Package for easier access to the Forsta Surveys REST API
Papers that mentioned: 10

Very Likely Science (65)

pypi: cv2

Papers that mentioned: 10

Unlikely Science (0)

pypi: oligotyping

The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons
Papers that mentioned: 10

Very Likely Science (90)

pypi: abstrackr

Web-based Citation Screening Tool
Papers that mentioned: 10

Very Likely Science (65)

pypi: descr

HTML pretty-printing of Python structures
Papers that mentioned: 10

Very Likely Science (65)

cran: lavaan.survey

Complex Survey Structural Equation Modeling (SEM)
Papers that mentioned: 10

Very Likely Science (85)

pypi: concat

An experimental concatenative Python-based programming language
Papers that mentioned: 10

Very Likely Science (75)

pypi: screen

Screen width and so on
Papers that mentioned: 10

Very Likely Science (65)

pypi: cvx

OpenCV 'extension' with routinely used methods
Papers that mentioned: 10

Very Likely Science (65)

cran: hzar

Hybrid Zone Analysis using R
Papers that mentioned: 10

Very Likely Science (85)

pypi: genbox

input data generator for ``boxmox``
Papers that mentioned: 10

Very Likely Science (80)

pypi: icc

A Python implementation to calculate the ICC
Papers that mentioned: 10

Very Likely Science (80)

cran: Replication

Test Replications by Means of the Prior Predictive p-Value
Papers that mentioned: 10

Very Likely Science (75)

pypi: FIAT

FInite element Automatic Tabulator
Papers that mentioned: 10

Very Likely Science (65)

pypi: multitest

Multiprocess Unittest Runner
Papers that mentioned: 10

Very Likely Science (65)

pypi: fluff

Extra tools for PyLint
Papers that mentioned: 10

Very Likely Science (65)

pypi: Ball

Ball: A Python Package for Detecting Distribution Difference and Association in Metric Spaces
Papers that mentioned: 10

Very Likely Science (100)

pypi: cp2k

Papers that mentioned: 9

Very Likely Science (65)

pypi: Epiphany

Epiphany
Papers that mentioned: 9

Very Likely Science (65)

pypi: scilicet

A VobSub to SRT conversion library
Papers that mentioned: 9

Very Likely Science (80)

cran: googleVis

R Interface to Google Charts
Papers that mentioned: 9

Very Likely Science (75)

pypi: gunzip

Microapp gunzip
Papers that mentioned: 9

Very Likely Science (80)

pypi: dm

Dict to Data mapper
Papers that mentioned: 9

Very Likely Science (65)

bioconductor: batchelor

Single-Cell Batch Correction Methods
Papers that mentioned: 9

Very Likely Science (90)

pypi: scvelo

RNA velocity generalized through dynamical modeling
Papers that mentioned: 9

Very Likely Science (100)

cran: RND

Risk Neutral Density Extraction Package
Papers that mentioned: 9

Very Likely Science (75)

cran: CUFF

Charles's Utility Function using Formula
Papers that mentioned: 9

Likely Science (52)

pypi: harvester

An easy-to-use Web Scraping tool
Papers that mentioned: 9

Very Likely Science (65)

pypi: cp

cp(source,target,force=True) function
Papers that mentioned: 9

Very Likely Science (65)