Packages with Software Mentions in Scientific Papers

NESTML is a domain specific language that supports the specification of neuron models in a precise and concise syntax, based on the syntax of Python. Model equations can either be given as a simple string of mathematical notation or as an algorithm written in the built-in procedural language. The equations are analyzed by NESTML to compute an exact solution if possible or use an appropriate numeric solver otherwise.
Papers that mentioned: 10

Very Likely Science (75)

pypi: abstrackr

Web-based Citation Screening Tool
Papers that mentioned: 10

Very Likely Science (65)

pypi: oligotyping

The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons
Papers that mentioned: 10

Very Likely Science (90)

pypi: tidytree

manager directories
Papers that mentioned: 10

Very Likely Science (65)

pypi: env

Environment Variables for Humans
Papers that mentioned: 10

Very Likely Science (65)

pypi: Ball

Ball: A Python Package for Detecting Distribution Difference and Association in Metric Spaces
Papers that mentioned: 10

Very Likely Science (100)

pypi: lin

a pip-installable package example
Papers that mentioned: 10

Very Likely Science (65)

pypi: delta

Human friendly context aware duration parsing library
Papers that mentioned: 10

Very Likely Science (65)

pypi: genbox

input data generator for ``boxmox``
Papers that mentioned: 10

Very Likely Science (80)

cran: VFS

Vegetated Filter Strip and Erosion Model
Papers that mentioned: 10

Very Likely Science (95)

cran: PPRL

Privacy Preserving Record Linkage
Papers that mentioned: 10

Very Likely Science (75)

pypi: sda

A wrapper for Selenium. This library uses custom data attributes to accelerate testing through the Selenium framework
Papers that mentioned: 10

Likely Science (40)

pypi: genorm

GenORM (simple functional MySQL/PostgreSQL ORM)
Papers that mentioned: 10

Very Likely Science (65)

pypi: query

Quick interactive exploration of SQL databases.
Papers that mentioned: 10

Very Likely Science (65)

pypi: Aphid

A toolkit for working with nested data types
Papers that mentioned: 10

Very Likely Science (65)

pypi: descr

HTML pretty-printing of Python structures
Papers that mentioned: 10

Very Likely Science (65)

pypi: cvx

OpenCV 'extension' with routinely used methods
Papers that mentioned: 10

Very Likely Science (65)

cran: contrast

A Collection of Contrast Methods
Papers that mentioned: 10

Very Likely Science (75)

pypi: TSI

Modules for use with the TSI 4000 Series flow meter
Papers that mentioned: 10

Very Likely Science (65)

cran: pa

Performance Attribution for Equity Portfolios
Papers that mentioned: 10

Likely Science (50)

cran: MCMC.qpcr

Bayesian Analysis of qRT-PCR Data
Papers that mentioned: 10

Very Likely Science (93)

bioconductor: Prostar

Provides a GUI for DAPAR
Papers that mentioned: 10

Very Likely Science (90)

cran: bigmemory

Manage Massive Matrices with Shared Memory and Memory-Mapped Files
Papers that mentioned: 10

Very Likely Science (77)

cran: rsatscan

Tools, Classes, and Methods for Interfacing with 'SaTScan' Stand-Alone Software
Papers that mentioned: 10

Very Likely Science (75)

bioconductor: PROPS

PRObabilistic Pathway Score (PROPS)
Papers that mentioned: 10

Very Likely Science (100)

cran: Kendall

Kendall Rank Correlation and Mann-Kendall Trend Test
Papers that mentioned: 10

Very Likely Science (85)

cran: CoordinateCleaner

Automated Cleaning of Occurrence Records from Biological Collections
Papers that mentioned: 10

Very Likely Science (90)

pypi: sds

Stochastic Diffusion Search
Papers that mentioned: 10

Very Likely Science (80)

cran: ERSA

Exploratory Regression 'Shiny' App
Papers that mentioned: 10

Very Likely Science (85)

cran: SII

Papers that mentioned: 10

Unlikely Science (0)

pypi: lightgbm

LightGBM Python Package
Papers that mentioned: 10

Very Likely Science (100)

pypi: MDB

Browse imdb data for a folder full of movies!
Papers that mentioned: 10

Very Likely Science (65)

cran: phylotools

Phylogenetic Tools for Eco-Phylogenetics
Papers that mentioned: 10

Very Likely Science (85)

pypi: tensorflow-gpu

Removed: please install "tensorflow" instead.
Papers that mentioned: 10

Very Likely Science (80)

bioconductor: DNAshapeR

High-throughput prediction of DNA shape features
Papers that mentioned: 10

Very Likely Science (73)

pypi: clue

Cloudify development environment CLI
Papers that mentioned: 10

Very Likely Science (65)

pypi: FlowCal

Flow Cytometry Calibration Library
Papers that mentioned: 10

Very Likely Science (100)

pypi: Gallery

Convert photos and videos for use on the web, integrates with SiteTool to produce static HTML galleries.
Papers that mentioned: 10

Very Likely Science (65)

bioconductor: Clomial

Infers clonal composition of a tumor
Papers that mentioned: 10

Very Likely Science (98)

bioconductor: nucleR

Nucleosome positioning package for R
Papers that mentioned: 10

Very Likely Science (90)

pypi: boost

Boost automatically toots from Mastodon users
Papers that mentioned: 10

Likely Science (40)

bioconductor: RMassBank

Workflow to process tandem MS files and build MassBank records
Papers that mentioned: 10

Very Likely Science (90)

pypi: jade

Fast and Simple jade(pug) to html converter in C
Papers that mentioned: 10

Very Likely Science (65)

pypi: Africa

It's just a name snipe.
Papers that mentioned: 10

Very Likely Science (65)

pypi: WebApp

Create and/or Edit WebApp HTML Files in Python.
Papers that mentioned: 10

Very Likely Science (65)

cran: BaSTA

Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data
Papers that mentioned: 10

Very Likely Science (85)

cran: QFASA

Quantitative Fatty Acid Signature Analysis
Papers that mentioned: 10

Very Likely Science (85)

bioconductor: Harman

The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Papers that mentioned: 10

Very Likely Science (98)

pypi: concat

An experimental concatenative Python-based programming language
Papers that mentioned: 10

Very Likely Science (75)

pypi: PADS

Python Algorithms and Data Structures
Papers that mentioned: 10

Very Likely Science (75)

cran: hzar

Hybrid Zone Analysis using R
Papers that mentioned: 10

Very Likely Science (85)

pypi: decipher

Package for easier access to the Forsta Surveys REST API
Papers that mentioned: 10

Very Likely Science (65)

pypi: snp

freeze inputs and outputs to functions for refactoring
Papers that mentioned: 10

Likely Science (40)

cran: pack

Convert values to/from raw vectors
Papers that mentioned: 10

Very Likely Science (75)

pypi: icc

A Python implementation to calculate the ICC
Papers that mentioned: 10

Very Likely Science (80)

cran: OSTE

Optimal Survival Trees Ensemble
Papers that mentioned: 10

Very Likely Science (83)

pypi: suncalc

A fast, vectorized Python port of suncalc.js
Papers that mentioned: 10

Very Likely Science (65)

pypi: solve

solve
Papers that mentioned: 10

Very Likely Science (80)

cran: SimInf

A Framework for Data-Driven Stochastic Disease Spread Simulations
Papers that mentioned: 10

Very Likely Science (100)

cran: enviPat

Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
Papers that mentioned: 10

Very Likely Science (75)

pypi: cv2

Papers that mentioned: 10

Unlikely Science (0)

pypi: screen

Screen width and so on
Papers that mentioned: 10

Very Likely Science (65)

cran: DCCA

Detrended Fluctuation and Detrended Cross-Correlation Analysis
Papers that mentioned: 10

Very Likely Science (85)

pypi: numba

compiling Python code using LLVM
Papers that mentioned: 10

Very Likely Science (65)

cran: lavaan.survey

Complex Survey Structural Equation Modeling (SEM)
Papers that mentioned: 10

Very Likely Science (85)

cran: SGB

Simplicial Generalized Beta Regression
Papers that mentioned: 10

Very Likely Science (85)

pypi: multitest

Multiprocess Unittest Runner
Papers that mentioned: 10

Very Likely Science (65)

pypi: pdb4amber

PDB analyzer to prepare PDB files for Amber simulations.
Papers that mentioned: 10

Very Likely Science (75)

pypi: pa

Paper Arxiv: A command line based academic paper management tool.
Papers that mentioned: 10

Very Likely Science (65)

pypi: digest

Calculate message digests of files or standard input
Papers that mentioned: 10

Very Likely Science (65)

pypi: fluff

Extra tools for PyLint
Papers that mentioned: 10

Very Likely Science (65)

cran: diagmeta

Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints
Papers that mentioned: 10

Very Likely Science (100)

pypi: kmers

Bioinformatic k-mer analysis
Papers that mentioned: 10

Very Likely Science (90)

pypi: DeepCell

Deep learning for single cell image segmentation
Papers that mentioned: 10

Very Likely Science (100)

pypi: pyfasta

fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
Papers that mentioned: 9

Very Likely Science (100)

cran: dclone

Data Cloning and MCMC Tools for Maximum Likelihood Methods
Papers that mentioned: 9

Very Likely Science (92)

cran: mmap

Map Pages of Memory
Papers that mentioned: 9

Very Likely Science (75)

pypi: dm

Dict to Data mapper
Papers that mentioned: 9

Very Likely Science (65)

pypi: cp2k

Papers that mentioned: 9

Very Likely Science (65)

pypi: sentimentr

Context-aware sentiment analysis model for formal and informal social media-style parlance
Papers that mentioned: 9

Very Likely Science (65)

pypi: scvelo

RNA velocity generalized through dynamical modeling
Papers that mentioned: 9

Very Likely Science (100)

pypi: scopus

Outdated package
Papers that mentioned: 9

Very Likely Science (80)

pypi: gunzip

Microapp gunzip
Papers that mentioned: 9

Very Likely Science (80)

pypi: harvester

An easy-to-use Web Scraping tool
Papers that mentioned: 9

Very Likely Science (65)

pypi: Epiphany

Epiphany
Papers that mentioned: 9

Very Likely Science (65)

pypi: self

@self decorator makes method return self (jQuery-like chaining)
Papers that mentioned: 9

Very Likely Science (65)