Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: pdb4amber
https://packages.ecosyste.ms/registries/pypi.org/packages/pdb4amber
PDB analyzer to prepare PDB files for Amber simulations.
1 version
Latest release: over 7 years ago
38 downloads last month
Papers Mentioning pdb4amber 10
10.3390/molecules24213987
Mechanism of Action of Non-Synonymous Single Nucleotide Variations Associated with α-Carbonic Anhydrase II DeficiencyCited by: 19
Author(s): Taremekedzwa Allan Sanyanga, Bilal Nizami, Özlem Tastan Bishop
Software Mentions: 8
Published: about 5 years ago
10.1371/journal.pcbi.1008988
Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactionsCited by: 10
Author(s): Nikolina Šoštarić, Vera van Noort
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0205179
Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thalianaCited by: 10
Author(s): Rashmi R. Hazarika, Nikolina Šoštarić, Yi‐Feng Sun, Vera van Noort
Software Mentions: 4
Published: about 6 years ago
10.3390/molecules25153530
Flavonoids and Terpenoids with PTP-1B Inhibitory Properties from the Infusion of Salvia amarissima OrtegaCited by: 14
Author(s): Eric D. Salinas-Arellano, Araceli Pérez-Vásquez, Isabel Rivero‐Cruz, Rafael Torres-Colín, Martín González-Andrade, Manuel Rangel‐Grimaldo, Rachel Mata
Software Mentions: 3
Published: over 4 years ago
10.1038/sdata.2018.310
PEPCONF, a diverse data set of peptide conformational energiesCited by: 21
Author(s): Viki Kumar Prasad, Alberto Otero-de-la-Roza, Gino A. DiLabio
Software Mentions: 3
Published: almost 6 years ago
10.1038/srep34066
Mechanism of metamifop inhibition of the carboxyltransferase domain of acetyl-coenzyme A carboxylase in Echinochloa crus-galliCited by: 27
Author(s): Xiang-Dong Xia, Wenjie Tang, Shun He, Jing Kang, Hao Ma, Jianhong Li
Software Mentions: 1
Published: about 8 years ago
10.3389/fmolb.2018.00095
The Hypervariable Loops of Free TCRs Sample Multiple Distinct Metastable Conformations in SolutionCited by: 8
Author(s): J. Crooks, Christopher T. Boughter, L. Ridgway Scott, Erin J. Adams
Software Mentions: 1
Published: about 6 years ago
10.3389/fmolb.2020.00046
Comparative Molecular Dynamics Simulations Provide Insight Into Antibiotic Interactions: A Case Study Using the Enzyme L,L-Diaminopimelate Aminotransferase (DapL)Cited by: 1
Author(s): Lily E. Adams, Patrick Rynkiewicz, Gregory A. Babbitt, Jamie S. Mortensen, Rachel A. North, Renwick C. J. Dobson, André O. Hudson
Software Mentions: 1
Published: almost 5 years ago
10.1074/jbc.RA120.015103
Self-acetylation at the active site of phosphoenolpyruvate carboxykinase (PCK1) controls enzyme activityCited by: 4
Author(s): Pedro Latorre‐Muro, Josue Baeza, R. Hurtado‐Guerrero, Thomas Hicks, Ignacio Delso, Cristina Hernández-Ruiz, Adrián Velázquez‐Campoy, Alexis J. Lawton, Jesús Angulo, John M. Denu, José A. Carrodeguas
Software Mentions: 1
Published: almost 4 years ago
10.3390/biom11040597
Structural Basis for the C-Terminal Domain of Mycobacterium tuberculosis Ribosome Maturation Factor RimM to Bind Ribosomal Protein S19Cited by: 3
Author(s): Haoran Zhang, Qiuxiang Zhou, Cheng Guo, Liubin Feng, Huilin Wang, Xian Liao, Donghai Lin
Software Mentions: 1
Published: over 3 years ago