Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: DeepCell

https://packages.ecosyste.ms/registries/pypi.org/packages/DeepCell

Deep learning for single cell image segmentation
34 versions
Latest release: about 1 year ago
1 dependent package
792 downloads last month

Papers Mentioning DeepCell 10

Mass Cytometry Imaging for the Study of Human Diseases—Applications and Data Analysis Strategies
Cited by: 128
Author(s): Heeva Baharlou, Nicolas P Canete, Anthony L. Cunningham, Andrew N. Harman, Ellis Patrick
Software Mentions: 5
Published: about 5 years ago

10.1111/mmi.14417

BactMAP: An R package for integrating, analyzing and visualizing bacterial microscopy data
Cited by: 23
Author(s): Renske van Raaphorst, Morten Kjos, Jan‐Willem Veening
Software Mentions: 4
Published: almost 5 years ago

10.1038/s42003-021-02361-1

Multiplexed imaging analysis of the tumor-immune microenvironment reveals predictors of outcome in triple-negative breast cancer
Cited by: 21
Author(s): Aalok Patwa, Rikiya Yamashita, Long Jin, Tyler Risom, Michael Angelo, Leeat Keren, Daniel L. Rubin
Software Mentions: 4
Published: over 3 years ago

10.3389/fimmu.2021.652631

Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images
Cited by: 19
Author(s): Yunhao Bai, Bokai Zhu, Xavier Rovira-Clavé, Han Chen, Maxim Markovic, Chi N. Chan, Tung–Hung Su, David R. McIlwain, Jacob D. Estes, Leeat Keren, Garry P. Nolan, Sizun Jiang
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.65151

Misic, a general deep learning-based method for the high-throughput cell segmentation of complex bacterial communities
Cited by: 29
Author(s): Swapnesh Panigrahi, Dorothée Murat, Antoine Le Gall, Eugénie Martineau, Kelly Goldlust, Jean-Bernard Fiche, Sara Rombouts, Marcelo Nöllmann, Léon Espinosa, Tâm Mignot
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.57613

Accurate and versatile 3D segmentation of plant tissues at cellular resolution
Cited by: 123
Author(s): Adrian Wolny, Lorenzo Cerrone, Athul Vijayan, Rachele Tofanelli, Amaya Vilches Barro, Marion Louveaux, Christian Wenzl, Soeren Strauss, David Wilson-Sánchez, Rena Lymbouridou, Susanne S Steigleder, Constantin Pape, Alberto Bailoni, Salva Duran-Nebreda, George W. Bassel, Jan U. Lohmann, Miltos Tsiantis, Fred A. Hamprecht, Kay Schneitz, Alexis Maizel, Anna Kreshuk
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.59187

3DeeCellTracker, a deep learning-based pipeline for segmenting and tracking cells in 3D time lapse images
Cited by: 46
Author(s): Chentao Wen, Takuya Miura, Venkatakaushik Voleti, Kazushi Yamaguchi, Motosuke Tsutsumi, Kiyohiko Yamamoto, Kohei Otomo, Yujiro Fujie, Takayuki Teramoto, Takeshi Ishihara, Kazuhiro Aoki, Tomomi Nemoto, Elizabeth M. C. Hillman, Koutarou D. Kimura
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms21176373

Developing Electron Microscopy Tools for Profiling Plasma Lipoproteins Using Methyl Cellulose Embedment, Machine Learning and Immunodetection of Apolipoprotein B and Apolipoprotein(a)
Cited by: 2
Author(s): Yvonne Giesecke, Samuel Soete, Katarzyna Mackinnon, Thanasis Tsiaras, Madeline Ward, M. G. Althobaiti, Tamás Süveges, James Lucocq, Stephen J. McKenna, John M. Lucocq
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2019.00755

Techniques for Studying Decoding of Single Cell Dynamics
Cited by: 26
Author(s): Stevan Jeknić, Tetsuichi Kudo, Markus W. Covert
Software Mentions: 1
Published: over 5 years ago

10.1177/24725552211023214

Evaluating Very Deep Convolutional Neural Networks for Nucleus Segmentation from Brightfield Cell Microscopy Images
Cited by: 13
Author(s): Mohammed A. S. Ali, О. N. Misko, Sten-Oliver Salumaa, Mikhail Papkov, Kaupo Palo, Dmytro Fishman, Leopold Parts
Software Mentions: 1
Published: about 3 years ago