Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: kmers

https://packages.ecosyste.ms/registries/pypi.org/packages/kmers

Bioinformatic k-mer analysis
4 versions
Latest release: almost 8 years ago
1 downloads last month

Papers Mentioning kmers 10

10.1371/journal.pcbi.1008918

Genome-wide analysis of lncRNA stability in human
Cited by: 17
Author(s): Kaiwen Shi, Tao Liu, Hanjiang Fu, Wuju Li, Xiaofei Zheng
Software Mentions: 9
Published: over 3 years ago

Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay
Cited by: 79
Author(s): Michael J. Roach, Daniel L. Johnson, Jöerg Bohlmann, H. J. J. Van Vuuren, Steven J.M. Jones, Isak S. Pretorius, Simon A. Schmidt, Anthony R. Borneman
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-020-06916-0

Using full chloroplast genomes of ‘red’ and ‘yellow’ Bixa orellana (achiote) for kmer based identification and phylogenetic inference
Cited by: 2
Author(s): Jorge Villacrés-Vallejo, José Aranda-Ventura, Anna Wallis, Robin Cagle, Sara M. Handy, Jeffery Davis, Elizabeth Reed, Shu Zhang, Errol Strain, Monica Pava‐Ripoll, David L. Erickson, Padmini Ramachandran, Andrea Ottesen
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-018-2243-x

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
Cited by: 73
Author(s): Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, İnanç Birol, René L. Warren
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-015-2161-5

Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype
Cited by: 49
Author(s): Aris Ilias, Jacques Lagnel, Despoina Evripidis Kapantaidaki, Emmanouil Roditakis, Costas S. Tsigenopoulos, John Vontas, Anastasia Tsagkarakou
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2019.02413

A Simple and Robust Statistical Method to Define Genetic Relatedness of Samples Related to Outbreaks at the Genomic Scale – Application to Retrospective Salmonella Foodborne Outbreak Investigations
Cited by: 15
Author(s): Nicolas Radomski, Sabrina Cadel-Six, Emeline Cherchame, Arnaud Felten, Pauline Barbet, Federica Di Palma, Ludovic Mallet, Simon Le Hello, François‐Xavier Weill, Laurent Guillier, Michel‐Yves Mistou
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-017-4318-x

Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing
Cited by: 22
Author(s): Aitor Serres‐Armero, Inna Povolotskaya, Javier Quilez, Óscar Ramírez, Gabriel Santpere, Lukas F. K. Kuderna, Jessica Hernández-Rodríguez, Marcos Fernández-Callejo, Daniel Gómez‐Sánchez, Adam H. Freedman, Zhenxin Fan, John Novembre, Arcadi Navarro, Adam R. Boyko, Robert K. Wayne, Carles Vilà, Belén Lorente-Galdós, Tomàs Marquès-Bonet
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms19072071

RFAmyloid: A Web Server for Predicting Amyloid Proteins
Cited by: 43
Author(s): Mengting Niu, Yanjuan Li, Chuyu Wang, Koeun Han
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.42486

Panton–Valentine leucocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial GWAS
Cited by: 53
Author(s): Bernadette C. Young, Sarah G Earle, Sona Soeng, Pinaki Sar, Varun Kumar, Songly Hor, Vuthy Sar, Rachel Bousfield, Nicholas Sanderson, Leanne Barker, Nicole Stoesser, Katherine R. W. Emary, Christopher M. Parry, Emma K. Nickerson, Paul Turner, Rory Bowden, Derrick W. Crook, David Wyllie, Nicholas P. J. Day, Daniel J. Wilson, Catrin E. Moore
Software Mentions: 1
Published: almost 6 years ago

10.1093/bioinformatics/btz400

ntEdit: scalable genome sequence polishing
Cited by: 64
Author(s): Warren Rm, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J.M. Jones, Jean Bousquet, Jöerg Bohlmann, İnanç Birol
Software Mentions: 1
Published: over 5 years ago