Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: hichipper

https://packages.ecosyste.ms/registries/pypi.org/packages/hichipper

Processing HiChIP data into loops.
24 versions
Latest release: over 5 years ago
142 downloads last month

Papers Mentioning hichipper 10

10.1186/s13072-021-00390-y

Molecular and computational approaches to map regulatory elements in 3D chromatin structure
Cited by: 7
Author(s): Beoung Hun Lee, Suhn Kyong Rhie
Software Mentions: 21
Published: almost 4 years ago

Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II, and Pol III
Cited by: 81
Author(s): Yongpeng Jiang, Jinfeng Huang, Kehuan Lun, Boyuan Li, Haonan Zheng, Yuanjun Li, Rong Zhou, Duan Wenjia, Chenlu Wang, Yuanqing Feng, Huilu Yao, Cheng Li, Ji Xiong
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1006982

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
Cited by: 83
Author(s): Ivan Jurić, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yanxiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Maowen Hu
Software Mentions: 5
Published: over 5 years ago

10.1186/s13072-021-00417-4

Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C
Cited by: 2
Author(s): Ning Liu, Wai Yee Low, Hamid Alinejad‐Rokny, Stephen Pederson, Timothy Sadlon, Simon C. Barry, James Breen
Software Mentions: 5
Published: over 3 years ago

10.1186/s12915-020-00779-3

Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
Cited by: 15
Author(s): Helen Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony Adamson, Craig Taylor, Julia Ding, Vasanthi Priyadarshini Gaddi, Yao Fu, Patrick M. Gaffney, Gisela Orozco, Richard B Warren, Steve Eyre
Software Mentions: 4
Published: over 4 years ago

10.3390/ijms22010347

Global Genome Conformational Programming during Neuronal Development Is Associated with CTCF and Nuclear FGFR1—The Genome Archipelago Model
Cited by: 8
Author(s): Brandon Decker, Michał Liput, Hussam Abdellatif, Donald Yergeau, Yongho Bae, Josep Miquel Jornet, Ewa K. Stachowiak, Michal K. Stachowiak
Software Mentions: 4
Published: almost 4 years ago

10.1007/s00401-020-02225-8

C11orf95-RELA reprograms 3D epigenome in supratentorial ependymoma
Cited by: 11
Author(s): Jacqueline Jufen Zhu, Nathaniel Jillette, Xiao Nan Li, Albert W. Cheng, Ching C. Lau
Software Mentions: 3
Published: over 4 years ago

10.3390/cancers11101440

Analysis of Promoter-Associated Chromatin Interactions Reveals Biologically Relevant Candidate Target Genes at Endometrial Cancer Risk Loci
Cited by: 30
Author(s): Tracy A. O’Mara, Amanda B. Spurdle, Dylan M. Glubb
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms22158337

Regulation Network of Colorectal-Cancer-Specific Enhancers in the Progression of Colorectal Cancer
Cited by: 3
Author(s): Bohan Chen, Yuan Ma, Jinfang Bi, Wenbin Wang, Anshun He, Guanghao Su, Zhongfang Zhao, Jiandang Shi, Lei Zhang
Software Mentions: 2
Published: over 3 years ago

10.1016/j.isci.2020.101583

Erythropoietin Regulates Transcription and YY1 Dynamics in a Pre-established Chromatin Architecture
Cited by: 2
Author(s): Andrea A. Perreault, J. Brown, Bryan J. Venters
Software Mentions: 2
Published: about 4 years ago