Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1006982

https://doi.org/10.1371/journal.pcbi.1006982

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

Cited by: 83
Author(s): Ivan Jurić, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yanxiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Maowen Hu
Published: over 5 years ago

Software Mentions 5

cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
cran: VGAM
Vector Generalized Linear and Additive Models
Papers that mentioned: 89
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: hichipper
Processing HiChIP data into loops.
Papers that mentioned: 10
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203