Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13072-021-00417-4

https://doi.org/10.1186/s13072-021-00417-4

Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C

Cited by: 2
Author(s): Ning Liu, Wai Yee Low, Hamid Alinejad‐Rokny, Stephen Pederson, Timothy Sadlon, Simon C. Barry, James Breen
Published: about 3 years ago

Software Mentions 5

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GOTHiC
Binomial test for Hi-C data analysis
Papers that mentioned: 17
cran: HiCseg
Detection of domains in HiC data
Papers that mentioned: 17
cran: TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Papers that mentioned: 31
pypi: hichipper
Processing HiChIP data into loops.
Papers that mentioned: 10