Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: rxncon

https://packages.ecosyste.ms/registries/pypi.org/packages/rxncon

The reaction-contingency framework for cellular signalling processes.
17 versions
Latest release: almost 3 years ago
28 downloads last month

Papers Mentioning rxncon 10

10.1186/1752-0509-7-58

Reaction-contingency based bipartite Boolean modelling
Cited by: 14
Author(s): Max Flöttmann, Falko Krause, Edda Klipp, Marcus Krantz
Software Mentions: 4
Published: over 11 years ago

Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks
Cited by: 19
Author(s): Takahide Mori, Max Flöttmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-021-92833-5

BiPSim: a flexible and generic stochastic simulator for polymerization processes
Cited by: 2
Author(s): Stephan Fischer, Marc Dinh, Vincent Henry, Philippe Robert, Anne Goelzer, Vincent Fromion
Software Mentions: 3
Published: about 3 years ago

10.1093/bioinformatics/btt159

Biographer: web-based editing and rendering of SBGN compliant biochemical networks
Cited by: 14
Author(s): Falko Krause, Marvin Schulz, Ben Ripkens, Max Flöttmann, Marcus Krantz, Edda Klipp, Thomas Handorf
Software Mentions: 2
Published: over 11 years ago

10.1186/1752-0509-8-70

NetworkViewer: visualizing biochemical reaction networks with embedded rendering of molecular interaction rules
Cited by: 14
Author(s): Hsueh-Chien Cheng, B. Angermann, Fengkai Zhang, Martin Meier‐Schellersheim
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-15-316

MOSBIE: a tool for comparison and analysis of rule-based biochemical models
Cited by: 13
Author(s): John Wenskovitch, Leonard A. Harris, José Juan Tapia, James R. Faeder, G. Elisabeta Marai
Software Mentions: 1
Published: almost 10 years ago

10.1093/bioinformatics/btaa484

Automated inference of Boolean models from molecular interaction maps using CaSQ
Cited by: 47
Author(s): Sara Sadat Aghamiri, Vidisha Singh, Aurélien Naldi, Tomáš Helikar, Sylvain Soliman, Anna Niarakis
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1005857

Automated visualization of rule-based models
Cited by: 15
Author(s): John A. P. Sekar, José-Juan Tapia, James R. Faeder
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0238838

Executable biochemical space for specification and analysis of biochemical systems
Cited by: 5
Author(s): Matej Troják, David Šafránek, Lukrécia Mertová, Luboš Brim
Software Mentions: 1
Published: about 4 years ago

10.1186/1752-0509-6-107

Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling
Cited by: 35
Author(s): Matthew S. Creamer, Edward C. Stites, Meraj Aziz, James A. Cahill, Chin Wee Tan, Michael E. Berens, Haiyong Han, Kimberly J. Bussey, Daniel D. Von Hoff, William S. Hlavacek, Richard G. Posner
Software Mentions: 1
Published: about 12 years ago