Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: scvelo
https://packages.ecosyste.ms/registries/pypi.org/packages/scvelo
RNA velocity generalized through dynamical modeling
30 versions
Latest release: almost 2 years ago
22 dependent packages
2,752 downloads last month
Papers Mentioning scvelo 9
10.1038/s41422-020-00453-x
Establishment of intestinal organoid cultures modeling injury-associated epithelial regenerationCited by: 39
Author(s): Molong Qu, Liang Xiong, Yulin Lyu, Xiannian Zhang, Jie Shen, Jingyang Guan, Peiyuan Chai, Lin Zheng, Boyao Nie, Cheng Li, Jun Xu, Hongkui Deng
Software Mentions: 13
Published: over 3 years ago
10.1038/s41422-021-00467-z
Dissecting human embryonic skeletal stem cell ontogeny by single-cell transcriptomic and functional analysesCited by: 44
Author(s): Jian He, Yan Jing, Jianfang Wang, Liangyu Zhao, Xin Qian, Yang Zeng, Yuxi Sun, Han Zhang, Zhijie Bai, Zongcheng Li, Yanli Ni, Yandong Gong, Yunqiao Li, Han He, Zhilei Bian, Yu Lan, Chunyu Ma, Lihong Bian, Heng Zhu, Bing Liu, Rui Yue
Software Mentions: 10
Published: over 3 years ago
10.1371/journal.pgen.1009773
Transcriptional progression during meiotic prophase I reveals sex-specific features and X chromosome dynamics in human fetal female germlineCited by: 7
Author(s): Xueying Fan, Ioannis Moustakas, Vanessa Torrens-Juaneda, Qijing Lei, Geert Hamer, Leoni A. Louwé, Gonneke S. K. Pilgram, Károly Szuhai, Roberto Matorras, Cristina Eguizábal, Lucette van der Westerlaken, Hailiang Mei, Susana M. Chuva de Sousa Lopes
Software Mentions: 9
Published: about 3 years ago
10.7554/eLife.60188
Combined transient ablation and single-cell RNA-sequencing reveals the development of medullary thymic epithelial cellsCited by: 42
Author(s): Kristen L. Wells, Corey N. Miller, Andreas R. Gschwind, Wei Wu, Jonah D Phipps, Mark S. Anderson, Lars M. Steinmetz
Software Mentions: 9
Published: almost 4 years ago
10.1186/s12915-021-01071-8
Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastomaCited by: 17
Author(s): Wenqin Luo, Guan Ning Lin, Weichen Song, Yu Zhang, Huadong Lai, Man Zhang, Juju Miao, Xiaomu Cheng, Yongjie Wang, Wang Li, Wenxiang Wei, Wei‐Qiang Gao, Ru Yang, Jia Wang
Software Mentions: 6
Published: about 3 years ago
10.15252/emmm.202114123
Mitogen‐activated protein kinase activity drives cell trajectories in colorectal cancerCited by: 33
Author(s): Florian Uhlitz, Philip Bischoff, Stefan Peidli, Anja Sieber, Alexandra Trinks, Mareen Lüthen, Benedikt Obermayer, Eric Blanc, Yana Ruchiy, Thomas Sell, Soulafa Mamlouk, Roberto Arsiè, Tzu-Ting Wei, Kathleen Klotz-Noack, Roland F. Schwarz, Birgit Sawitzki, Carsten Kamphues, Dieter Beule, Markus Landthaler, Christine Sers, David Horst, Nils Blüthgen, Markus Morkel
Software Mentions: 6
Published: about 3 years ago
10.1038/s41419-021-03740-6
Single-cell analysis reveals urothelial cell heterogeneity and regenerative cues following cyclophosphamide-induced bladder injuryCited by: 12
Author(s): Xiaomu Cheng, Huadong Lai, Wenqin Luo, Man Zhang, Juju Miao, Weichen Song, Shunpeng Xing, Jia Wang, Wei‐Qiang Gao
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.67436
Single-cell analysis of the ventricular-subventricular zone reveals signatures of dorsal and ventral adult neurogenesisCited by: 48
Author(s): Arantxa Cebrián-Silla, Marcos Assis Nascimento, Stephanie Redmond, Benjamin Mansky, David Wu, Kirsten Obernier, Ricardo Romero Rodriguez, Susana González-Granero, José Manuel García‐Verdugo, Daniel A. Lim, Arturo Álvarez-Buylla
Software Mentions: 4
Published: about 3 years ago
10.3390/ijms21041380
Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome EditingCited by: 9
Author(s): Giovanni Pasquini, Virginia Cora, Anka Swiersy, Kevin Achberger, Lena Antkowiak, Brigitte Müller, Tobias Wimmer, Sabine Anne‐Kristin Fraschka, Nicolas Casadei, Marius Ueffing, Stefan Liebau, Knut Stieger, Volker Busskamp
Software Mentions: 3
Published: over 4 years ago