Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1009773

https://doi.org/10.1371/journal.pgen.1009773

Cited by: 7
Author(s): Xueying Fan, Ioannis Moustakas, Vanessa Torrens-Juaneda, Qijing Lei, Geert Hamer, Leoni A. Louwé, Gonneke S. K. Pilgram, Károly Szuhai, Roberto Matorras, Cristina Eguizábal, Lucette van der Westerlaken, Hailiang Mei, Susana M. Chuva de Sousa Lopes
Published: over 2 years ago

Software Mentions 9

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: numpy

Fundamental package for array computing in Python
Papers that mentioned: 832

pypi: pandas

Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640

pypi: scanpy

Single-Cell Analysis in Python.
Papers that mentioned: 68

pypi: scipy

Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071

pypi: scvelo

RNA velocity generalized through dynamical modeling
Papers that mentioned: 9

pypi: seaborn

Statistical data visualization
Papers that mentioned: 283

pypi: velocyto

RNA velocity analysis for single cell RNA-seq data
Papers that mentioned: 25