Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41422-020-00453-x

https://doi.org/10.1038/s41422-020-00453-x

Cited by: 39
Author(s): Molong Qu, Liang Xiong, Yulin Lyu, Xiannian Zhang, Jie Shen, Jingyang Guan, Peiyuan Chai, Lin Zheng, Boyao Nie, Cheng Li, Jun Xu, Hongkui Deng
Published: over 3 years ago

Software Mentions 13

bioconductor: AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Papers that mentioned: 45
bioconductor: GENIE3
GEne Network Inference with Ensemble of trees
Papers that mentioned: 172
bioconductor: RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions
Papers that mentioned: 55
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
cran: cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
pypi: scvelo
RNA velocity generalized through dynamical modeling
Papers that mentioned: 9
pypi: tl
T I M E L I N E - RL events tracking software
Papers that mentioned: 3
pypi: velocity
DNS caching for humans
Papers that mentioned: 7
pypi: velocyto
RNA velocity analysis for single cell RNA-seq data
Papers that mentioned: 25