Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: Clomial

https://packages.ecosyste.ms/registries/bioconductor.org/packages/Clomial

Infers clonal composition of a tumor
1 version
Latest release: about 1 year ago
15,220 downloads total

Papers Mentioning Clomial 10

10.1186/1471-2105-16-S13-S7

Enhancing cancer clonality analysis with integrative genomics
Cited by: 6
Author(s): Erich A. Peterson, Michael Bauer, Shweta S. Chavan, Cody Ashby, Niels Weinhold, Christoph Heuck, Gareth J. Morgan, Donald J. Johann
Software Mentions: 7
Published: about 9 years ago

10.1371/journal.pcbi.1003703

Inferring Clonal Composition from Multiple Sections of a Breast Cancer
Cited by: 104
Author(s): Habil Zare, Junfeng Wang, Alex Hu, Kris Weber, Joshua D. Smith, Deborah A. Nickerson, Chang Woo Song, Daniela Witten, C. Anthony Blau, William Stafford Noble
Software Mentions: 5
Published: over 10 years ago

10.1038/s42003-021-02637-6

DEVOLUTION—A method for phylogenetic reconstruction of aneuploid cancers based on multiregional genotyping data
Cited by: 6
Author(s): Natalie Andersson, Subhayan Chattopadhyay, Anders Valind, Jenny Karlsson, David Gisselsson
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-59006-2

Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data
Cited by: 19
Author(s): Sayaka Miura, Tracy Vu, Jiamin Deng, Tiffany Buturla, Olumide Oladeinde, Joongdae Choi, Sudhir Kumar
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-021-04338-7

Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data
Cited by: 1
Author(s): Leila Baghaarabani, Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi, Seyed Peyman Shariatpanahi, Bahram Goliaei
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-017-1169-3

ddClone: joint statistical inference of clonal populations from single cell and bulk tumour sequencing data
Cited by: 52
Author(s): Sohrab Salehi, Adi Steif, Andrew Roth, Samuel Aparicio, Alexandre Bouchard‐Côté
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-017-13338-8

Engineered in-vitro cell line mixtures and robust evaluation of computational methods for clonal decomposition and longitudinal dynamics in cancer
Cited by: 4
Author(s): Hossein Farahani, Camila P. E. de Souza, Raewyn Billings, Damian Yap, Karey Shumansky, Adrian Wan, Daniel Lai, Anne-Marie Mes-Masson, Samuel Aparicio, Sohrab P. Shah
Software Mentions: 2
Published: about 7 years ago