Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: snp

https://packages.ecosyste.ms/registries/pypi.org/packages/snp

freeze inputs and outputs to functions for refactoring
1 version
Latest release: about 6 years ago
17 downloads last month

Papers Mentioning snp 10

Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species
Cited by: 11
Author(s): Christian Rellstab, Stefan Zoller, Christian Sailer, Andrew Tedder, Félix Gugerli, Kentaro Shimizu, Rolf Holderegger, Alex Widmer, Martin C. Fischer
Software Mentions: 9
Published: about 4 years ago

10.1186/s13015-019-0137-8

SNPs detection by eBWT positional clustering
Cited by: 24
Author(s): Nicola Prezza, Nadia Pisanti, Marinella Sciortino, Giovanna Rosone
Software Mentions: 5
Published: almost 6 years ago

10.1186/1471-2105-14-326

snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing
Cited by: 6
Author(s): Ali Al‐Shahib, Anthony Underwood
Software Mentions: 4
Published: about 11 years ago

10.1111/pbi.13351

The high‐quality genome of diploid strawberry (<i>Fragaria nilgerrensis</i>) provides new insights into anthocyanin accumulation
Cited by: 45
Author(s): Junxiang Zhang, Yingying Lei, Bao-Tian Wang, Li Song, Shuang Yu, Yan Wang, Li He, Yuexue Liu, Yue Ma, Dai Hirata, Jiahong Wang, Zhihong Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pntd.0008235

Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis
Cited by: 11
Author(s): Marcela Suárez-Esquivel, Gabriela Hernández-Mora, Nazareth Ruíz-Villalobos, Elías Barquero-Calvo, Carlos Chacón-Díaz, Jason T. Ladner, Gerardo Oviedo-Sánchez, Jeffrey T. Foster, Norman Rojas‐Campos, Esteban Chaves-Olarte, Nicholas R. Thomson, Edgardo Moreno, Caterina Guzmán-Verri
Software Mentions: 4
Published: over 4 years ago

10.1186/1471-2105-12-75

AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm
Cited by: 16
Author(s): Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston Patrick Kuo, Lucila Ohno-Machado
Software Mentions: 4
Published: over 13 years ago

10.1111/eva.13203

Parentage‐based tagging combined with genetic stock identification is a cost‐effective and viable replacement for coded‐wire tagging in large‐scale assessments of marine Chinook salmon fisheries in British Columbia, Canada
Cited by: 10
Author(s): Terry D. Beacham, Colin G. Wallace, Kim Jonsen, Brenda McIntosh, John R. Candy, K. Ter Horst, Cheryl P. Lynch, D. M. Willis, Wilf Luedke, Lee Kearey, Eric B. Rondeau
Software Mentions: 3
Published: over 3 years ago

10.1186/2047-217X-2-17

Galaxy tools to study genome diversity
Cited by: 19
Author(s): Oscar C. Bedoya-Reina, Aakrosh Ratan, Richard Burhans, Hie Lim Kim, Belinda Giardine, Cathy Riemer, Qunhua Li, Thomas L. Olson, Thomas P. Loughran, Bridgett M. vonHoldt, George H. Perry, Stephan C. Schuster, Webb Miller
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0090485

Comparison of Illumina and 454 Deep Sequencing in Participants Failing Raltegravir-Based Antiretroviral Therapy
Cited by: 30
Author(s): Jonathan Z. Li, Brad Chapman, Patrick Charlebois, Oliver Hofmann, Brian Weiner, Alyssa Jocson Porter, Reshmi Samuel, Saran Vardhanabhuti, Zheng Li, Joseph J. Eron, Babafemi Taiwo, Michael C. Zody, Matthew R. Henn, Daniel R. Kuritzkes, Winston Hide
Software Mentions: 1
Published: over 10 years ago

10.1093/gbe/evab088

A Transcriptomic Pipeline Adapted for Genomic Sequence Discovery of Germline-Restricted Sequence in Zebra Finch,<i>Taeniopygia guttata</i>
Cited by: 8
Author(s): Kathryn C. Asalone, Ajuni K Takkar, Colin J. Saldanha, John R. Bracht
Software Mentions: 1
Published: over 3 years ago