Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: oligotyping
https://packages.ecosyste.ms/registries/pypi.org/packages/oligotyping
The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons
13 versions
Latest release: over 3 years ago
29 downloads last month
Papers Mentioning oligotyping 10
10.7717/peerj.3472
Using high-throughput sequencing of ITS2 to describe <i>Symbiodinium</i> metacommunities in St. John, US Virgin IslandsCited by: 50
Author(s): Ross Cunning, Ruth D. Gates, Peter J. Edmunds
Software Mentions: 14
Published: about 7 years ago
10.3389/fmicb.2014.00601
The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence dataCited by: 8
Author(s): Alban Ramette, Pier Luigi Buttigieg
Software Mentions: 7
Published: almost 10 years ago
10.1186/s40168-020-00841-w
Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasetsCited by: 49
Author(s): Isabel F. Escapa, Yanmei Huang, Tsute Chen, Maoxuan Lin, Alexis Kokaras, Floyd E. Dewhirst, Katherine P. Lemon
Software Mentions: 5
Published: over 4 years ago
10.1128/mSystems.00007-18
Asymptomatic Intestinal Colonization with Protist <i>Blastocystis</i> Is Strongly Associated with Distinct Microbiome Ecological PatternsCited by: 86
Author(s): Miriam Nieves-Ramı́rez, Oswaldo Partida-Rodríguez, Isabelle Laforest‐Lapointe, Lisa A. Reynolds, Eric Brown, A. Valdez-Salazar, P. Morán-Silva, Liliana Rojas-Velázquez, Evan Morien, Laura Wegener Parfrey, Mingliang Jin, Jens Walter, Javier Torres, Marie‐Claire Arrieta, C. Ximénez-García, B. Brett Finlay
Software Mentions: 5
Published: about 6 years ago
10.1128/mSphere.00083-21
Exposure to Parasitic Protists and Helminths Changes the Intestinal Community Structure of Bacterial Communities in a Cohort of Mother-Child Binomials from a Semirural Setting in MexicoCited by: 8
Author(s): Oswaldo Partida-Rodríguez, Miriam Nieves-Ramı́rez, Isabelle Laforest‐Lapointe, Eric Brown, Laura Wegener Parfrey, A Valadez-Salazar, Lisa Thorson, Patricia Morán, Enrique González, E. Ortiz Rascón, Ulises Magaña, E. Hernández, Liliana Rojas-Velázquez, Javier Torres, Marie Claire Arrieta, Cecilia Ximénez, B. Brett Finlay
Software Mentions: 4
Published: about 3 years ago
10.1186/s40168-016-0202-1
Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patternsCited by: 98
Author(s): Francesca De Filippis, Nicoletta Pellegrini, Luca Laghi, Marco Gobbetti
Software Mentions: 3
Published: almost 8 years ago
10.3389/fmicb.2017.00264
A Few Pseudomonas Oligotypes Dominate in the Meat and Dairy Processing EnvironmentCited by: 63
Author(s): Giuseppina Stellato, Daniel R. Utter, Andy Voorhis, Maria De Angelis, A. Murat Eren, Danilo Ercolini
Software Mentions: 2
Published: over 7 years ago
10.1111/1462-2920.15666
Seasonal environmental variability drives microdiversity within a coastal Synechococcus populationCited by: 4
Author(s): Kristen R. Hunter‐Cevera, Bryan R. Hamilton, Michael G. Neubert, Heidi M. Sosik
Software Mentions: 2
Published: about 3 years ago
10.3389/fmicb.2017.01347
Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East AntarcticaCited by: 45
Author(s): Hyunmin Koo, Nazia Mojib, Joseph A. Hakim, Ian Hawes, Yukiko Tanabe, Dale T. Andersen, Asim K. Bej
Software Mentions: 2
Published: about 7 years ago
10.1186/1471-2105-15-41
VAMPS: a website for visualization and analysis of microbial population structuresCited by: 165
Author(s): Susan M. Huse, David Welch, Andy Voorhis, Anna Shipunova, Hilary G. Morrison, A. Murat Eren, Mitchell L. Sogin
Software Mentions: 1
Published: over 10 years ago