Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7717/peerj.3472

https://doi.org/10.7717/peerj.3472

Using high-throughput sequencing of ITS2 to describe <i>Symbiodinium</i> metacommunities in St. John, US Virgin Islands

Cited by: 50
Author(s): Ross Cunning, Ruth D. Gates, Peter J. Edmunds
Published: over 7 years ago

Software Mentions 14

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: maptools
Tools for Handling Spatial Objects
Papers that mentioned: 269
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: raster
Geographic Data Analysis and Modeling
Papers that mentioned: 561
cran: rgeos
Interface to Geometry Engine - Open Source ('GEOS')
Papers that mentioned: 144
cran: sp
Classes and Methods for Spatial Data
Papers that mentioned: 258
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: illumina-utils
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.8+).
Papers that mentioned: 22
pypi: maptools
Manipulate maps
Papers that mentioned: 269
pypi: oligotyping
The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons
Papers that mentioned: 10
pypi: sp
Quickly find out which directories / files are hogging your disk space.
Papers that mentioned: 258