Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSphere.00083-21

https://doi.org/10.1128/mSphere.00083-21

Exposure to Parasitic Protists and Helminths Changes the Intestinal Community Structure of Bacterial Communities in a Cohort of Mother-Child Binomials from a Semirural Setting in Mexico

Cited by: 8
Author(s): Oswaldo Partida-Rodríguez, Miriam Nieves-Ramı́rez, Isabelle Laforest‐Lapointe, Eric Brown, Laura Wegener Parfrey, A Valadez-Salazar, Lisa Thorson, Patricia Morán, Enrique González, E. Ortiz Rascón, Ulises Magaña, E. Hernández, Liliana Rojas-Velázquez, Javier Torres, Marie Claire Arrieta, Cecilia Ximénez, B. Brett Finlay
Published: about 3 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
pypi: oligotyping
The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons
Papers that mentioned: 10