Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: nucleR

https://packages.ecosyste.ms/registries/bioconductor.org/packages/nucleR

Nucleosome positioning package for R
1 version
Latest release: 12 months ago
25,591 downloads total

Papers Mentioning nucleR 10

10.1371/journal.pcbi.1007814

Genome-wide prediction of topoisomerase IIβ binding by architectural factors and chromatin accessibility
Cited by: 4
Author(s): Pedro Manuel Martínez-García, Miguel García-Torres, Federico Divina, José Terrón-Bautista, Irene Delgado‐Sainz, Felipe Cortés‐Ledesma
Software Mentions: 8
Published: over 3 years ago

10.1186/s12864-017-3580-2

NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data
Cited by: 37
Author(s): Yevhen Vainshtein, Karsten Rippe, Vladimir B. Teif
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pgen.1005930

Regulation of Budding Yeast CENP-A levels Prevents Misincorporation at Promoter Nucleosomes and Transcriptional Defects
Cited by: 36
Author(s): Erica Hildebrand, Sue Biggins
Software Mentions: 7
Published: over 8 years ago

10.3389/fgene.2012.00320

NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data
Cited by: 7
Author(s): Abhinav Nellore, Konstantin K. Bobkov, Elizabeth D. Howe, Aleksandr Pankov, Aaron A. Diaz, Jun S. Song
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pgen.1006179

Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes
Cited by: 83
Author(s): Kyuha Choi, Carsten Reinhard, Heïdi Serra, Piotr A Ziolkowski, Charles J Underwood, Xiaohui Zhao, Thomas J. Hardcastle, Nataliya E. Yelina, Catherine Griffin, Matthew A. Jackson, Christine Mézard, Gil McVean, Gregory P. Copenhaver, Ian Henderson
Software Mentions: 3
Published: about 8 years ago

10.1186/1471-2164-12-489

Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast
Cited by: 31
Author(s): Özgen Deniz, Oscar Flores, Federica Battistini, Alberto Pérez, Montserrat Soler-López, Modesto Orozco
Software Mentions: 2
Published: about 13 years ago

10.1186/gb-2012-13-11-r106

Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling
Cited by: 50
Author(s): Mariona Nadal-Ribelles, Núria Conde-Pueyo, Oscar Flores, Juan González-Vallinas, Eduardo Eyras, Modesto Orozco, Eulàlia de Nadal, Francesc Posas
Software Mentions: 1
Published: almost 13 years ago