Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
pypi projects 9,932
pypi: SimpleElastix
User-friendly multi-lingual library for medical image registrationPapers that mentioned: 12
pypi: rmsd
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB format), using rotation (fx. Kabsch algorithm), atom reordering (fx. Hungarian algorithm), and axis reflections, resulting in the minimal RMSD.Papers that mentioned: 12
pypi: mantel
Python implementation of the Mantel test, a significance test of the correlation between two distance matricesPapers that mentioned: 12
pypi: xlrd
Library for developers to extract data from Microsoft Excel (tm) .xls spreadsheet filesPapers that mentioned: 12
pypi: methylpy
Bisulfite sequencing data processing and differential methylation analysisPapers that mentioned: 12
pypi: Aggrescan3D
Aggrescan3D - protein aggregation analysis standalone applicationPapers that mentioned: 12
pypi: scaffolder
High level project and application modeling tool based on the rules of Scaffolder DSL which utilizes Scaffolder aPaaS to generate all source code, configuration and testing files.Papers that mentioned: 12
pypi: CLES
Calculate common language effect size (CLES) for 2 paired or independent samplesPapers that mentioned: 12
pypi: regression
Recreation of different kinds of regression using optimisation algorithmsPapers that mentioned: 12
pypi: sybil
Automated testing for the examples in your code and documentation.Papers that mentioned: 12
pypi: log
Papers that mentioned: 11pypi: clustergram
Clustergram - visualization and diagnostics for cluster analysisPapers that mentioned: 11
pypi: copycat
copycat - simple, transparent and non-intrusive python persistencePapers that mentioned: 11
pypi: arsenal
Papers that mentioned: 11pypi: classifier
Classify the files in your Downloads folder into suitable destinations.Papers that mentioned: 11
pypi: ChemDataExtractor
A toolkit for extracting chemical information from the scientific literature.Papers that mentioned: 11
pypi: stringMLST
Fast k-mer based tool for alignment and assembly-free multi locus sequence typing (MLST) directly from genome sequencing reads.Papers that mentioned: 11
pypi: dbcan
Standalone version of dbCAN annotation tool for automated CAZyme annotationPapers that mentioned: 11
pypi: eig
Enhanced Integrated Gradients - a method of attributing the prediction of a deep network to its input featuresPapers that mentioned: 11
pypi: edlib
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.Papers that mentioned: 11
pypi: BOFdat
Package to generate biomass objective function stoichiometric coefficients from experimental dataPapers that mentioned: 11
pypi: Edward
A library for probabilistic modeling, inference, and criticismPapers that mentioned: 11
pypi: hclust2
Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicationPapers that mentioned: 11
pypi: Accord
A high-level Python Web framework that encourages rapid development and clean, pragmatic design.Papers that mentioned: 11
pypi: gprMax
Electromagnetic Modelling Software based on the Finite-Difference Time-Domain (FDTD) methodPapers that mentioned: 11
pypi: social
Social is a python package for social data analysis and exploitationPapers that mentioned: 11