Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: hclust2

https://packages.ecosyste.ms/registries/pypi.org/packages/hclust2

Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication
2 versions
Latest release: over 4 years ago
1 dependent package
346 downloads last month

Papers Mentioning hclust2 11

10.1186/s40168-021-01089-8

Remodeling of the maternal gut microbiome during pregnancy is shaped by parity
Cited by: 28
Author(s): Alexander S. F. Berry, Meghann K. Pierdon, Ana M. Misic, Megan C. Sullivan, Kevin T. O’Brien, Ying Chen, Samuel Murray, Lydia A. Ramharack, Robert N. Baldassano, Thomas D. Parsons, Daniel P. Beiting
Software Mentions: 9
Published: over 3 years ago

10.1186/s13068-018-1036-9

Genome-resolved metagenomics of sugarcane vinasse bacteria
Cited by: 16
Author(s): Noriko A. Cassman, Késia Silva Lourenço, Janaína Braga do Carmo, Heitor Cantarella, Eiko E. Kuramae
Software Mentions: 6
Published: over 6 years ago

10.3389/fcell.2021.711253

TLR5 Supports Development of Placental Labyrinthine Zone in Mice
Cited by: 1
Author(s): Jensen H.C. Yiu, Samson Wing Ming Cheung, Jieling Cai, Kam-Suen Chan, Jing Chen, Lai Yee Cheong, Hau-Tak Chau, Aimin Xu, Raymond Li, Connie W. Woo
Software Mentions: 4
Published: over 3 years ago

10.1002/mbo3.896

Comparison of specific endophytic bacterial communities in different developmental stages ofPassiflora incarnatausing culture‐dependent and culture‐independent analysis
Cited by: 12
Author(s): Marcela Cristina Goulart, Luis Gabriel Cueva-Yesquén, Kelly J. Hidalgo, Derlene Attili‐Angelis, Fabiana Fantinatti‐Garboggini
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.5010

Bacterial communities within Phengaris (Maculinea) alcon caterpillars are shifted following transition from solitary living to social parasitism of Myrmica ant colonies
Cited by: 12
Author(s): Mark A. Szenteczki, Camille Pitteloud, Luca Pietro Casacci, Lucie Kešnerová, Melissa R. L. Whitaker, Philipp Engel, Roger Vila, Nadir Alvarez
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2019.00149

Alterations to the Lung Microbiome in Idiopathic Pulmonary Fibrosis Patients
Cited by: 19
Author(s): Xunliang Tong, Fei Su, Xiaomao Xu, Huji Xu, Ting Yang, Qixia Xu, Huaping Dai, Kewu Huang, Lihui Zou, Wenna Zhang, Surui Pei, Fei Xiao, Yanming Liu, Chen Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.00270

Inference of Convergent Gene Acquisition Among Pseudomonas syringae Strains Isolated From Watermelon, Cantaloupe, and Squash
Cited by: 14
Author(s): E. A. Newberry, Mohamed Ebrahim, Sujan Timilsina, Nevena Zlatković, Aleksa Obradović, Carolee T. Bull, Erica M. Goss, José C. Huguet‐Tapia, Mathews L. Paret, Jeffrey B. Jones, Neha Potnis
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-021-07372-0

The seasonal changes of the gut microbiome of the population living in traditional lifestyles are represented by characteristic species-level and functional-level SNP enrichment patterns
Cited by: 3
Author(s): Xue Zhu, Jiyue Qin, Chongyang Tan, Kang Ning
Software Mentions: 2
Published: almost 4 years ago

10.1128/mSystems.00164-16

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
Cited by: 308
Author(s): Francesco Asnicar, Serena Manara, Moreno Zolfo, Duy Tin Truong, Matthias Scholz, Federica Armanini, Pamela Ferretti, Valentina Gorfer, Anna Pedrotti, Adrian Tett, Nicola Segata
Software Mentions: 2
Published: over 7 years ago

10.1186/s13068-021-01968-0

Evaluation of acidogenesis products’ effect on biogas production performed with metagenomics and isotopic approaches
Cited by: 15
Author(s): Anna Detman, Michał Bucha, Laura Treu, Aleksandra Chojnacka, Łukasz Pleśniak, Agnieszka Salamon, Ewa Łupikasza, Robert Gromadka, Jan Gawor, Agnieszka Gromadka, Wojciech Drzewicki, Marta Jakubiak, Marek Janiga, I. Matyasik, Mieczysław Blaszczyk, Mariusz Orion Jędrysek, Stefano Campanaro, Anna Sikora
Software Mentions: 2
Published: over 3 years ago

10.1002/cam4.3569

Randomized trial assessing impact of probiotic supplementation on gut microbiome and clinical outcome from targeted therapy in metastatic renal cell carcinoma
Cited by: 29
Author(s): Nazlı Dizman, JoAnn Hsu, Paulo Gustavo Bergerot, John D. Gillece, Megan Folkerts, Lauren Reining, Jeffrey M. Trent, Sarah K. Highlander, Sumanta K. Pal
Software Mentions: 2
Published: about 4 years ago