Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: scaffolder
https://packages.ecosyste.ms/registries/pypi.org/packages/scaffolder
High level project and application modeling tool based on the rules of Scaffolder DSL which utilizes Scaffolder aPaaS to generate all source code, configuration and testing files.
2 versions
Latest release: almost 4 years ago
6 downloads last month
Papers Mentioning scaffolder 12
10.1186/s12864-021-07937-z
The genome of the extremophile Artemia provides insight into strategies to cope with extreme environmentsCited by: 13
Author(s): Stephanie De Vos, Stéphane Rombauts, Louis Coussement, Wannes Dermauw, Marnik Vuylsteke, Patrick Sorgeloos, James S. Clegg, Ziro Nambu, Filip Van Nieuwerburgh, Parisa Norouzitallab, Thomas Van Leeuwen, Tim De Meyer, Gilbert Van Stappen, Yves Van de Peer, Peter Bossier
Software Mentions: 5
Published: about 3 years ago
10.1186/s12864-018-4567-3
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing readsCited by: 38
Author(s): Bai-Han Zhu, Jun Xiao, Wei Xue, Gui-Cai Xu, Mingyuan Sun, Jiong-Tang Li
Software Mentions: 3
Published: over 6 years ago
10.1128/MRA.00658-21
Draft Genome Sequence of Vibrio chagasii 18LP, Isolated from Gilthead Seabream (Sparus aurata) Larvae Reared in AquacultureCited by: 3
Author(s): Gracinda M. M. Sanches‐Fernandes, Gianmaria Califano, Tina Keller‐Costa, Sara Castanho, Florbela Soares, Laura Ribeiro, Pedro Pousão-Ferreira, Leónardo Mata, Rodrigo Costa
Software Mentions: 2
Published: about 3 years ago
10.1534/g3.119.400954
Improved Genome Assembly and Annotation of the Soybean Aphid (<i>Aphis glycines</i> Matsumura)Cited by: 19
Author(s): Thomas C. Mathers
Software Mentions: 2
Published: over 4 years ago
10.1128/genomeA.00946-13
Draft Genome Sequence of a Plant Growth-Promoting Rhizobacterium, Serratia fonticola Strain AU-P3(3)Cited by: 9
Author(s): Usha Devi, Indu Khatri, Neeraj Kumar, Lalit Kumar, Deepak Sharma, S. Subramanian, Adesh K. Saini
Software Mentions: 2
Published: over 10 years ago
10.1128/genomeA.00947-13
Draft Genome Sequence of Plant Growth-Promoting Rhizobacterium Pantoea sp. Strain AS-PWVM4Cited by: 4
Author(s): Indu Khatri, Sukhvir Kaur, Usha Devi, Neeraj Kumar, Deepak Sharma, S. Subramanian, Adesh K. Saini
Software Mentions: 2
Published: over 10 years ago
10.1128/genomeA.01022-13
Draft Genome Sequence of Plant-Growth-Promoting Rhizobacterium Serratia fonticola Strain AU-AP2C, Isolated from the Pea RhizosphereCited by: 6
Author(s): Usha Devi, Indu Khatri, Neeraj Kumar, Deepak Sharma, S. Subramanian, Adesh K. Saini
Software Mentions: 2
Published: over 10 years ago
10.1128/genomeA.00067-16
Draft Genome Sequence of <i>Alcaligenes faecalis</i> Strain IITR89, an Indole-Oxidizing BacteriumCited by: 9
Author(s): Raj Kumar Regar, Vivek Kumar Gaur, Gayatri Mishra, Sudhir Jadhao, Mohan Kamthan, Natesan Manickam
Software Mentions: 2
Published: over 8 years ago
10.1186/1757-4749-5-20
Evidence of a new metabolic capacity in an emerging diarrheal pathogen: lessons from the draft genomes of Vibrio fluvialis strains PG41 and I21563Cited by: 5
Author(s): Indu Khatri, Sakshi Mahajan, Chetna Dureja, S. Subramanian, Saumya Raychaudhuri
Software Mentions: 2
Published: about 11 years ago
10.1186/1748-7188-8-22
Space-efficient and exact de Bruijn graph representation based on a Bloom filterCited by: 266
Author(s): Rayan Chikhi, Guillaume Rizk
Software Mentions: 2
Published: over 11 years ago
10.3390/ijms18071563
Tick Haller’s Organ, a New Paradigm for Arthropod Olfaction: How Ticks Differ from InsectsCited by: 44
Author(s): Ann L. Carr, Robert D. Mitchell, Anirudh Dhammi, Brooke W. Bissinger, Daniel E. Sonenshine, R. Michael Roe
Software Mentions: 2
Published: about 7 years ago
10.1186/1471-2164-14-604
L_RNA_scaffolder: scaffolding genomes with transcriptsCited by: 114
Author(s): Wei Xue, Jiong-Tang Li, Yaping Zhu, Guangyuan Hou, Xue Kong, Youyi Kuang, Xin Sun
Software Mentions: 2
Published: about 11 years ago