Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
cran projects 6,234
cran: Modeler
Classes and Methods for Training and Using Binary Prediction ModelsPapers that mentioned: 310
cran: mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density EstimationPapers that mentioned: 297
cran: INSPIRE
Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene SetsPapers that mentioned: 296
cran: nnet
Feed-Forward Neural Networks and Multinomial Log-Linear ModelsPapers that mentioned: 296
cran: AICcmodavg
Model Selection and Multimodel Inference Based on (Q)AIC(c)Papers that mentioned: 261
cran: IMAGE
Papers that mentioned: 256cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut ImplementationPapers that mentioned: 255
cran: timeROC
Time-Dependent ROC Curve and AUC for Censored Survival DataPapers that mentioned: 254
cran: BioVenn
Create Area-Proportional Venn Diagrams from Biological ListsPapers that mentioned: 247
cran: kmer
Fast K-Mer Counting and Clustering for Biological Sequence AnalysisPapers that mentioned: 240
cran: qgraph
Graph Plotting Methods, Psychometric Data Visualization and Graphical Model EstimationPapers that mentioned: 222
cran: Platypus
Single-Cell Immune Repertoire and Gene Expression AnalysisPapers that mentioned: 218
cran: geomorph
Geometric Morphometric Analyses of 2D and 3D Landmark DataPapers that mentioned: 212
cran: JADE
Blind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance CriteriaPapers that mentioned: 198
cran: DHARMa
Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression ModelsPapers that mentioned: 194
cran: ALS
Multivariate Curve Resolution Alternating Least Squares (MCR-ALS)Papers that mentioned: 189
cran: ENMTools
Analysis of Niche Evolution using Niche and Distribution ModelsPapers that mentioned: 181
cran: deSolve
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')Papers that mentioned: 179
cran: missForest
Nonparametric Missing Value Imputation using Random ForestPapers that mentioned: 178
cran: spatstat
Spatial Point Pattern Analysis, Model-Fitting, Simulation, TestsPapers that mentioned: 172
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'Papers that mentioned: 164
cran: CARS
Covariate Assisted Ranking and Screening for Large-Scale Two-Sample InferencePapers that mentioned: 158
cran: COMBAT
A Combined Association Test for Genes using Summary StatisticsPapers that mentioned: 157
cran: FD
Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional EcologyPapers that mentioned: 157