Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: MAP

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/MAP

Multimodal Automated Phenotyping
1 version
Latest release: over 5 years ago
1 dependent package
439 downloads last month

Papers Mentioning MAP 215

10.1186/1471-2105-15-224
MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing
Cited by: 275
Author(s): Krishna R. Kalari, Asha Nair, Jaysheel Bhavsar, Daniel R. O’Brien, Jaime Davila, Matthew A. Bockol, Jinfu Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher
Software Mentions: 8
Published: over 10 years ago
10.1186/s12859-019-2852-z
Differential analysis of combinatorial protein complexes with CompleXChange
Cited by: 4
Author(s): Thorsten Will, Volkhard Helms
Software Mentions: 7
Published: over 5 years ago
10.1371/journal.pgen.1009398
MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies
Cited by: 37
Author(s): Arjun Bhattacharya, Yun Li, Michael I. Love
Software Mentions: 6
Published: over 3 years ago
10.1093/molbev/msy147
Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent
Cited by: 246
Author(s): Tomáš Flouri, Xiyun Jiao, Bruce Rannala, Ziheng Yang
Software Mentions: 6
Published: over 6 years ago
10.7554/eLife.42499
A combination of transcription factors mediates inducible interchromosomal contacts
Cited by: 15
Author(s): Seungsoo Kim, Maitreya J. Dunham, Jay Shendure
Software Mentions: 5
Published: over 5 years ago
10.7554/eLife.39188
Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury
Cited by: 27
Author(s): Jordan W. Squair, Seth Tigchelaar, Kyung‐Mee Moon, Jie Liu, Wolfram Tetzlaff, Brian K. Kwon, Andrei V. Krassioukov, Christopher R. West, Leonard J. Foster, Michael A. Skinnider
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1004568
Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways
Cited by: 43
Author(s): Sean L. Seyler, Avishek Kumar, M. F. Thorpe, Oliver Beckstein
Software Mentions: 5
Published: about 9 years ago
10.1371/journal.pcbi.0040006
Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor
Cited by: 45
Author(s): Michał Okoniewski, Crispin Miller
Software Mentions: 5
Published: over 16 years ago
10.1111/1755-0998.12465
Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes
Cited by: 24
Author(s): Nina F. Ockendon, Lauren A. O’Connell, Stephen J. Bush, Jimena Monzón‐Sandoval, Holly Barnes, Tamás Székely, Hans A. Hofmann, Steve Dorus, Araxi O. Urrutia
Software Mentions: 5
Published: about 9 years ago
10.1093/gigascience/giaa035
Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction
Cited by: 15
Author(s): Karl A. Johnson, Guy M. Hagen
Software Mentions: 4
Published: over 4 years ago
10.1101/2021.06.22.449395
Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks
Cited by: 3
Author(s): Meghana Venkata Palukuri, Edward M. Marcotte
Software Mentions: 4
Published: over 3 years ago
10.1186/1755-8794-8-S2-S13
SeedsGraph: an efficient assembler for next-generation sequencing data
Cited by: 2
Author(s): Chuyu Wang, Maozu Guo, Xiaoyan Liu, Yang Liu, Quan Zou
Software Mentions: 4
Published: over 9 years ago
10.1186/s12936-018-2500-5
malariaAtlas: an R interface to global malariometric data hosted by the Malaria Atlas Project
Cited by: 61
Author(s): Daniel Pfeffer, Timothy C. D. Lucas, D. May, Jonathan Harris, Jennifer Rozier, Katherine A. Twohig, Ursula Dalrymple, Carlos A. Guerra, Catherine L. Moyes, Mike Thorn, Michele Nguyen, Samir Bhatt, Ewan Cameron, Daniel J. Weiss, Rosalind E. Howes, Katherine E. Battle, Harry S. Gibson, Peter W. Gething
Software Mentions: 4
Published: about 6 years ago
10.3390/s19224935
SNAPS: Sensor Analytics Point Solutions for Detection and Decision Support Systems
Cited by: 17
Author(s): Eric S. McLamore, Shoumen Datta, Victoria L. Morgan, Nicholas D. Cavallaro, Gregory A. Kiker, Daniel M. Jenkins, Yonghua Rong, Carmen Gomes, Jonathan C. Claussen, Diana Vanegas, Evangelyn C. Alocilja
Software Mentions: 4
Published: almost 5 years ago
10.26508/lsa.201900303
Rate of brain aging and <i>APOE ε4</i> are synergistic risk factors for Alzheimer’s disease
Cited by: 10
Author(s): Christin Glorioso, Andreas R. Pfenning, Sam S Lee, David A. Bennett, Etienne Sibille, M Kellis, Leonard Guarente
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pgen.1006777
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
Cited by: 138
Author(s): Romain Blanc-Mathieu, Laetitia Perfus‐Barbeoch, Jean‐Marc Aury, Martine Da Rocha, Jérôme Gouzy, Erika Sallet, Cristina Martín-Jimenez, Marc Bailly‐Bechet, Philippe Castagnone‐Sereno, Jean‐François Flot, Djampa Kozlowski, Julie Cazareth, Arnaud Couloux, Corinne Da Silva, Julie Guy, Yujin Kim, Corinne Rancurel, Thomas Schiex, Pierre Abad, Patrick Wincker, Etienne G. J. Danchin
Software Mentions: 4
Published: over 7 years ago
10.1186/s12859-017-1849-8
MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics
Cited by: 11
Author(s): Peng Zhai, Longshu Yang, Xiao Guo, Zhe Wang, Jiangtao Guo, Xiaoqi Wang, Huaiqiu Zhu
Software Mentions: 4
Published: about 7 years ago
10.1093/bib/bbz020
New approaches for metagenome assembly with short reads
Cited by: 113
Author(s): Martin Ayling, Matthew D. Clark, Richard M. Leggett
Software Mentions: 4
Published: over 5 years ago
10.1186/1471-2164-15-37
Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut
Cited by: 74
Author(s): Jorge F. Vázquez-Castellanos, Rodrigo García-López, Vicente Pérez‐Brocal, Miguel Pignatelli, Andrés Moya
Software Mentions: 4
Published: almost 11 years ago
10.3389/fmicb.2017.02619
Functional Stability and Community Dynamics during Spring and Autumn Seasons Over 3 Years in Camargue Microbial Mats
Cited by: 10
Author(s): Mercedes Berlanga, Montserrat Palau, Ricardo Guerrero
Software Mentions: 3
Published: almost 7 years ago
10.1186/s40793-016-0138-x
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
Cited by: 107
Author(s): Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, H. James Tripp, David Páez-Espino, Kristin Tennessen, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor Markowitz, Nikos C. Kyrpides
Software Mentions: 3
Published: over 8 years ago
10.1038/s41598-020-65755-x
Body size trends in response to climate and urbanization in the widespread North American deer mouse, Peromyscus maniculatus
Cited by: 16
Author(s): Robert Guralnick, Maggie M. Hantak, Daijiang Li, Bryan S. McLean
Software Mentions: 3
Published: over 4 years ago
10.1186/1471-2105-10-26
Identifying differential exon splicing using linear models and correlation coefficients
Cited by: 19
Author(s): Sonia Shah, Jacqueline A. Pallas
Software Mentions: 3
Published: almost 16 years ago
10.1186/s12864-018-4440-4
Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)
Cited by: 18
Author(s): Eddy Patricia López Molano, Odalys García Cabrera, Juliana José, Leandro Costa do Nascimento, Marcelo Falsarella Carazzolle, Paulo José Pereira Lima Teixeira, Javier Correa Álvarez, Ricardo Augusto Tiburcio, Paulo Massanari Tokimatu Filho, G.M.A. Lima, Rafael Victório Carvalho Güido, Thamy Lívia Ribeiro Corrêa, Adriana Franco Paes Leme, Piotr A. Mieczkowski, Gonçalo Amarante Guimarães Pereira
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12870-021-02904-y
QTLs and candidate genes analyses for fruit size under domestication and differentiation in melon (Cucumis melo L.) based on high resolution maps
Cited by: 22
Author(s): Qiang Lian, Qihua Fu, Yong Xu, Zhicheng Hu, Jing Zheng, Aiai Zhang, Yue He, Changsheng Wang, Chuanqiang Xu, Benxue Chen, Jordi García-Más, Guangwei Zhao, Huaisong Wang
Software Mentions: 3
Published: over 3 years ago
10.15252/msb.202010016
hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies
Cited by: 60
Author(s): Kevin Drew, John B. Wallingford, Edward M. Marcotte
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.5745
The BackMAP Python module: how a simpler Ramachandran number can simplify the life of a protein simulator
Cited by: 2
Author(s): Ranjan V. Mannige
Software Mentions: 3
Published: about 6 years ago
10.1002/evl3.12
No evidence for maintenance of a sympatric<i>Heliconius</i>species barrier by chromosomal inversions
Cited by: 86
Author(s): John W. Davey, Sarah L. Barker, Pasi Rastas, Ana Pinharanda, Simon H. Martin, Richard Durbin, W. Owen McMillan, Richard M. Merrill, Chris D. Jiggins
Software Mentions: 3
Published: over 7 years ago
10.1186/gb-2006-7-7-r63
Cited by: 295
Author(s): Sean R. Collins, Maya Schuldiner, Nevan J. Krogan, Jonathan S. Weissman
Software Mentions: 3
Published: almost 19 years ago
10.1038/s42003-020-1051-9
Analysis of genetically independent phenotypes identifies shared genetic factors associated with chronic musculoskeletal pain conditions
Cited by: 34
Author(s): Yakov A. Tsepilov, Maxim B. Freidin, Alexandra S. Shadrina, Sodbo Sharapov, Elizaveta E. Elgaeva, Jan Van Zundert, Lennart C. Karssen, Pradeep Suri, Frances Williams, Yurii S. Aulchenko
Software Mentions: 3
Published: over 4 years ago
10.1186/1743-0003-5-25
Review on solving the inverse problem in EEG source analysis
Cited by: 848
Author(s): Reuben Grech, Tracey A. Cassar, Joseph Muscat, Tracey A. Camilleri, Simon G. Fabri, Michalis Zervakis, Petros Xanthopoulos, Vangelis Sakkalis, Bart Vanrumste
Software Mentions: 3
Published: almost 16 years ago
10.1186/gb-2007-8-5-r79
An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
Cited by: 42
Author(s): Michał Okoniewski, Timothy Yates, Siân Dibben, Crispin Miller
Software Mentions: 3
Published: almost 18 years ago
10.3389/fncom.2016.00057
A Neuronal Network Model for Pitch Selectivity and Representation
Cited by: 10
Author(s): Chengcheng Huang, John Rinzel
Software Mentions: 3
Published: over 8 years ago
10.3389/fnins.2020.573513
Individual Differences in Peripheral Hearing and Cognition Reveal Sentence Processing Differences in Healthy Older Adults
Cited by: 14
Author(s): Ira Kurthen, Martin Meyer, Matthias Schlesewsky
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pcbi.0010046
Flux Balance Analysis of Mycolic Acid Pathway: Targets for Anti-Tubercular Drugs
Cited by: 137
Author(s): Karthik Raman, P. T. Ravi Rajagopalan, Nagasuma Chandra
Software Mentions: 2
Published: about 19 years ago
10.1186/s12936-017-1705-3
Spectrum-Malaria: a user-friendly projection tool for health impact assessment and strategic planning by malaria control programmes in sub-Saharan Africa
Cited by: 13
Author(s): Matthew Hamilton, Guy Mahiané, Elric Werst, Rachel Sanders, Olivier J. T. Briët, T. Smith, Richard Cibulskis, Ewan Cameron, Samir Bhatt, Daniel J. Weiss, Peter W. Gething, Carel Pretorius, Eline L. Korenromp
Software Mentions: 2
Published: over 7 years ago
10.1186/gb-2009-10-12-r140
Towards accurate imputation of quantitative genetic interactions
Cited by: 22
Author(s): Igor Ulitsky, Nevan J. Krogan, Ron Shamir
Software Mentions: 2
Published: almost 16 years ago
10.1371/journal.pone.0090761
Next Generation MUT-MAP, a High-Sensitivity High-Throughput Microfluidics Chip-Based Mutation Analysis Panel
Cited by: 18
Author(s): Erica Schleifman, Rachel Tam, Rajesh Patel, Alison Tsan, Teiko Sumiyoshi, Ling Fu, Rupal Desai, Nancy Schoenbrunner, Thomas W. Myers, Keith Bauer, E. J. Smith, Rajiv Raja
Software Mentions: 2
Published: over 10 years ago
10.18632/aging.202763
Gut microbiota from mice with cerebral ischemia-reperfusion injury affects the brain in healthy mice
Cited by: 10
Author(s): Wang Hong-ru, Shangjun Ren, Hailing Lv, Lili Cao
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0009166
Plasma Protein Biomarkers for Depression and Schizophrenia by Multi Analyte Profiling of Case-Control Collections
Cited by: 297
Author(s): Enrico Domenici, David Willé, Federica Tozzi, Inga Prokopenko, Sam Miller, Astrid McKeown, Clare Brittain, Dan Rujescu, Ina Giegling, Christoph W. Turck, Florian Holsboer, Edward T. Bullmore, Lefkos Middleton, Emilio Merlo‐Pich, Robert Alexander, Pierandrea Muglia
Software Mentions: 2
Published: over 14 years ago
10.1371/journal.pone.0008979
CK1ε Is Required for Breast Cancers Dependent on β-Catenin Activity
Cited by: 65
Author(s): So Young Kim, Ian F. Dunn, Ron Firestein, Piyush B. Gupta, Leslie Wardwell, Kara Repich, Anna C. Schinzel, Ben S. Wittner, Serena J. Silver, David E. Root, Jesse S. Boehm, Sridhar Ramaswamy, Eric S. Lander, William C. Hahn
Software Mentions: 2
Published: almost 15 years ago
10.3390/microorganisms8030371
Targeted Combination Antibiotic Therapy Induces Remission in Treatment-Naïve Crohn’s Disease: A Case Series
Cited by: 16
Author(s): Gaurav Agrawal, Annabel Clancy, Rijata Sharma, Roy Huynh, Sanjay Ramrakha, Thomas J. Borody
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0179875
Quantitative assessments of water-use efficiency in Temperate Eurasian Steppe along an aridity gradient
Cited by: 20
Author(s): Yizhao Chen, Jianlong Li, Weimin Ju, Honghua Ruan, Zhihao Qin, Y. H. Huang, Nasreen Jeelani, José Padarian, Pavel Propastin
Software Mentions: 2
Published: over 7 years ago
10.7554/eLife.11888
Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms
Cited by: 302
Author(s): Hanno Teeling, Bernhard M. Fuchs, Christin M. Bennke, Karen Krüger, Meghan Chafee, Lennart Kappelmann, Greta Reintjes, Jost Waldmann, Christian Quast, Frank Oliver Glöckner, Judith Lucas, Antje Wichels, Gunnar Gerdts, Karen Helen Wiltshire, Rudolf Amann
Software Mentions: 2
Published: over 8 years ago
10.3390/microorganisms8010098
Differential Genotyping of Mycobacterium avium Complex and Its Implications in Clinical and Environmental Epidemiology
Cited by: 18
Author(s): Jeong Ih Shin, Sung Jae Shin, Min Kyoung Shin
Software Mentions: 2
Published: almost 5 years ago
10.3390/ijerph17114007
An NS-3 Implementation and Experimental Performance Analysis of IEEE 802.15.6 Standard under Different Deployment Scenarios
Cited by: 12
Author(s): Beom-Su Kim, Tae-Eung Sung, Ki-Il Kim
Software Mentions: 2
Published: over 4 years ago
10.3390/s20133664
Learning Reward Function with Matching Network for Mapless Navigation
Cited by: 10
Author(s): Qichen Zhang, Mark Zhu, Liang Zou, Ming Li, Yong Zhang
Software Mentions: 2
Published: over 4 years ago
10.3390/s18113974
LSRR-LA: An Anisotropy-Tolerant Localization Algorithm Based on Least Square Regularized Regression for Multi-Hop Wireless Sensor Networks
Cited by: 8
Author(s): Wei Zhao, Fei Shao, Yong Song, And Wei Zheng
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12882-020-02024-z
Aortic pulse wave velocity, central pulse pressure, augmentation index and chronic kidney disease progression in individuals with type 2 diabetes: a 3- year prospective study
Cited by: 12
Author(s): Jianjun Liu, Sylvia Liu, Janus Lee, Resham L Gurung, M Yiamunaa, Keven Ang, Yi Shao, Robin Choo, Subramaniam Tavintharan, Wern Ee Tang, Chee Fang Sum, Su Chi Lim
Software Mentions: 2
Published: about 4 years ago
10.1186/s13033-021-00493-9
Revisiting caregiver satisfaction with children’s mental health services in the United States
Cited by: 1
Author(s): Lauren Seibel, Robin Peth-Pierce, Kimberly Hoagwood
Software Mentions: 2
Published: about 3 years ago
10.1186/1475-2875-12-161
Providing open access data online to advance malaria research and control
Cited by: 42
Author(s): Catherine L. Moyes, William H. Temperley, Alasdair L. Henry, Clara R. Burgert, Simon I. Hay
Software Mentions: 2
Published: over 11 years ago
10.1038/s41598-020-65633-6
Predicting miRNA-based disease-disease relationships through network diffusion on multi-omics biological data
Cited by: 14
Author(s): Marissa Sumathipala, Scott T. Weiss
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-021-88617-6
The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature
Cited by: 7
Author(s): S. Pirro, Ivana Z. Matić, Vittorio Colizzi, Andrea Galgani
Software Mentions: 2
Published: over 3 years ago
10.3390/jcm10153288
Sex-Specific Signature in the Circulating NLRP3 Levels of Saudi Adults with Metabolic Syndrome
Cited by: 5
Author(s): Nasser M. Al-Daghri, Kaiser Wani, Hind AlHarthi, Amani Alghamdi, Abdullah M. Alnaami, Sobhy M. Yakout
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0205628
Minimal medical imaging can accurately reconstruct geometric bone models for musculoskeletal models
Cited by: 19
Author(s): Edin Suwarganda, Laura E. Diamond, David G. Lloyd, Thor F. Besier, Zhang Ju, Bryce A. Killen, Trevor N. Savage, David J. Saxby
Software Mentions: 2
Published: over 5 years ago
10.1038/srep08280
Convergence of soil nitrogen isotopes across global climate gradients
Cited by: 118
Author(s): Joseph M. Craine, Andrew J. Elmore, Lixin Wang, Laurent Augusto, W. Troy Baisden, E. N. Jack Brookshire, Michael D. Cramer, Niles J. Hasselquist, Erik A. Hobbie, Ansgar Kahmen, Keisuke Koba, J. M. Kranabetter, Michelle C. Mack, E. Marín-Spiotta, Jordan R. Mayor, Kendra K. McLauchlan, Anders Michelsen, Gabriela Bielefeld Nardoto, Rafael S. Oliveira, Steven S. Perakis, Pablo Luís Peri, Carlos Alberto Quesada, Andreas Richter, Louis A. Schipper, Bryan Stevenson, Benjamín L. Turner, Ricardo Augusto Gorne Viani, Wolfgang Wanek, Bernd Zeller
Software Mentions: 2
Published: over 9 years ago
10.3390/s90100253
HyBloc: Localization in Sensor Networks with Adverse Anchor Placement
Cited by: 15
Author(s): King-Yip Cheng, King-Shan Lui, Vincent Tam
Software Mentions: 2
Published: almost 16 years ago
10.3390/ijms17101691
Meta-Analysis of Early Nutrition: The Benefits of Enteral Feeding Compared to a Nil Per Os Diet Not Only in Severe, but Also in Mild and Moderate Acute Pancreatitis
Cited by: 24
Author(s): M Korbonits, Nelli Farkas, Imre Szabó, Anita Illés, Áron Vincze, Gabriella Pár, Silvia Patrícia, Judit Bajor, Ákos Szücs, József Czimmer, Dóra Mosztbacher, Andrea Párniczky, Kata Szemes, Dániel Pécsi, Péter Hegyi
Software Mentions: 2
Published: about 8 years ago
10.3389/fpls.2014.00268
Metagenomic search strategies for interactions among plants and multiple microbes
Cited by: 18
Author(s): Ulrich Melcher, Ruchi Verma, William L. Schneider
Software Mentions: 2
Published: over 10 years ago
10.3389/fnana.2021.732464
Multi-Scale Light-Sheet Fluorescence Microscopy for Fast Whole Brain Imaging
Cited by: 13
Author(s): Zhouzhou Zhang, Xiao Yao, Xinxin Yin, Zhangcan Ding, Tianyi Huang, Yan Huo, Runan Ji, Hanchuan Peng, Zengcai V. Guo
Software Mentions: 2
Published: about 3 years ago
10.3389/fpls.2019.00224
Drought-Induced Carbon and Water Use Efficiency Responses in Dryland Vegetation of Northern China
Cited by: 15
Author(s): Chengcheng Gang, Yi Zhang, Liang Guo, Xuerui Gao, Shouzhang Peng, Mingxun Chen, Zhu Wen
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pcbi.1007886
Bayesian regression explains how human participants handle parameter uncertainty
Cited by: 4
Author(s): Jannes Jegminat, Maya A. Jastrzębowska, Matthew V. Pachai, Michael H. Herzog, Jean-Pascal Pfister
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pmed.1002687
Development and validation of a new method for indirect estimation of neonatal, infant, and child mortality trends using summary birth histories
Cited by: 13
Author(s): Roy Burstein, Haidong Wang, Robert C. Reiner, Simon I. Hay
Software Mentions: 2
Published: about 6 years ago
10.1093/dnares/dsu041
MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning
Cited by: 82
Author(s): FNU Afiahayati, Kengo Sato, Yasubumi Sakakibara
Software Mentions: 2
Published: almost 10 years ago
10.3389/fendo.2020.568446
Molecular Footprints of the Immune Assault on Pancreatic Beta Cells in Type 1 Diabetes
Cited by: 17
Author(s): Máikel Luís Colli, Florian Szymczak, Décio L. Eizirik
Software Mentions: 2
Published: about 4 years ago
10.1534/g3.114.011205
Conditional Genetic Interactions of<i>RTT107</i>,<i>SLX4</i>, and<i>HRQ1</i>Reveal Dynamic Networks upon DNA Damage in<i>S. cerevisiae</i>
Cited by: 12
Author(s): Grace P. Leung, Maria J. Aristizabal, Nevan J. Krogan, Michæl S. Kobor
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0047047
Structural and Functional Characterization of a Multifunctional Alanine-Rich Peptide Analogue from Pleuronectes americanus
Cited by: 34
Author(s): Ludovico Migliolo, Osmar N. Silva, Paula A. Silva, Maysa Paula da Costa, Carolina Rodrigues Costa, Diego O. Nolasco, J.A.R.G. Barbosa, Maria R. R. Silva, Marcelo P. Bemquerer, Lídia Maria Pinto de Lima, Maria Teresa V. Romanos, Sônia Maria de Freitas, Beatriz Simas Magalhães, Octávio L. Franco
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pone.0253484
Physical activity, brain tissue microstructure, and cognition in older adults
Cited by: 5
Author(s): Robert J. Dawe, Lei Yu, Sue E. Leurgans, Bryan D. James, Victoria N. Poole, Konstantinos Arfanakis, Julie A. Schneider, David A. Bennett, Aron S. Buchman
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pgen.1005074
Genetic Interaction Mapping Reveals a Role for the SWI/SNF Nucleosome Remodeler in Spliceosome Activation in Fission Yeast
Cited by: 24
Author(s): Kristin L. Patrick, Colm J. Ryan, Jiewei Xu, Jesse J. Lipp, Kelly E. Nissen, Assen Roguev, Michael Shales, Nevan J. Krogan, Christine Guthrie
Software Mentions: 2
Published: over 9 years ago
10.1038/s41421-019-0107-9
MAP: model-based analysis of proteomic data to detect proteins with significant abundance changes
Cited by: 10
Author(s): Mushan Li, Shiqi Tu, Zijia Li, Fengxiang Tan, Jian Liu, Qian Wang, Yuannyu Zhang, Jian Xu, Yijing Zhang, Feng Zhou, Zongshu Shao
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pgen.1000366
A Gene-Based Linkage Map for Bicyclus anynana Butterflies Allows for a Comprehensive Analysis of Synteny with the Lepidopteran Reference Genome
Cited by: 110
Author(s): Patrícia Beldade, Suzanne V Saenko, Nicolien Pul, Anthony D. Long
Software Mentions: 2
Published: over 15 years ago
10.5936/csbj.201209008
COMPUTER-AIDED PROTEIN DIRECTED EVOLUTION: A REVIEW OF WEB SERVERS, DATABASES AND OTHER COMPUTATIONAL TOOLS FOR PROTEIN ENGINEERING
Cited by: 49
Author(s): Rajni Verma, Ulrich Schwaneberg, Danilo Roccatano
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pcbi.1003007
Cleavage Entropy as Quantitative Measure of Protease Specificity
Cited by: 50
Author(s): Julian E. Fuchs, Susanne von Grafenstein, Roland G. Huber, Michael A. Margreiter, Gudrun M. Spitzer, Hannes G. Wallnoefer, Klaus R. Liedl
Software Mentions: 2
Published: over 11 years ago
10.1186/1741-7007-7-35
Effect of hydroxyurea on the promoter occupancy profiles of tumor suppressor p53 and p73
Cited by: 2
Author(s): Vera Huang, Xin Lü, Yong Jiang, Jean Y. J. Wang
Software Mentions: 2
Published: over 15 years ago
10.1007/s12104-020-09932-z
Complete assignment of Ala, Ile, LeuProS, Met and ValProS methyl groups of the protruding domain from human norovirus GII.4 Saga
Cited by: 7
Author(s): Christoph Müller-Hermes, Robert Creutznacher, Álvaro Mallagaray
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pcbi.1003715
Characterizing the Impact of Category Uncertainty on Human Auditory Categorization Behavior
Cited by: 18
Author(s): Adam M. Gifford, Yale E. Cohen, Alan A. Stocker
Software Mentions: 1
Published: over 10 years ago
10.1155/2015/962857
Mindfulness Meditation Improves Mood, Quality of Life, and Attention in Adults with Attention Deficit Hyperactivity Disorder
Cited by: 58
Author(s): Valquíria Bueno, Elisa Harumi Kozasa, Maria Aparecida da Silva, Tânia Maria Alves, Mário Rodrigues Louzã, Sabine Pompéia
Software Mentions: 1
Published: almost 10 years ago
10.1186/s40814-019-0506-6
A pilot study of the S-MAP (Solutions for Medications Adherence Problems) intervention for older adults prescribed polypharmacy in primary care: study protocol
Cited by: 10
Author(s): Deborah Patton, Jill J Francis, Ella Clark, Felicity Smith, Cathal Cadogan, Cristí­n Ryan, Carmel Hughes
Software Mentions: 1
Published: about 5 years ago
10.1002/prp2.477
Long‐term cardiovascular effects of vandetanib and pazopanib in normotensive rats
Cited by: 4
Author(s): Samantha Cooper, Joanne J. Carter, J E March, Jeanette Woolard
Software Mentions: 1
Published: over 5 years ago
10.1186/s12938-020-0750-2
The sensitivity of different methods for detecting abnormalities in auditory nerve function
Cited by: 1
Author(s): Tianhao Lu, Qiang Li, Chen Zhang, Min Chen, Zhengming Wang, Shufeng Li
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.196
An extended genovo metagenomic assembler by incorporating paired-end information
Cited by: 14
Author(s): FNU Afiahayati, Kengo Sato, Yasubumi Sakakibara
Software Mentions: 1
Published: about 11 years ago
10.1186/s13293-015-0038-6
Sex differences in substance use, health, and social functioning among opioid users receiving methadone treatment: a multicenter cohort study
Cited by: 60
Author(s): Monica Bawor, Brittany B. Dennis, Michael Varenbut, Jeff Daiter, David C. Marsh, Carolyn Plater, Andrew Worster, Meir Steiner, Rebecca Anglin, Guillaume Paré, Dipika Desai, Lehana Thabane, Zainab Samaan
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2164-12-274
The development and characterization of a 60K SNP chip for chicken
Cited by: 183
Author(s): Martien A. M. Groenen, Hendrik‐Jan Megens, Yalda Zare, Wesley C. Warren, La Deana W. Hillier, R.P.M.A. Crooijmans, Addie Vereijken, Ron Okimoto, William M. Muir, Hans H. Cheng
Software Mentions: 1
Published: over 13 years ago
10.1186/1756-3305-5-69
A global map of dominant malaria vectors
Cited by: 482
Author(s): Marianne Sinka, Michael J. Bangs, Sylvie Manguin, Yasmín Rubio-Palis, Theeraphap Chareonviriyaphap, Maureen Coetzee, Charles M. Mbogo, Janet Hemingway, Anand P. Patil, William H. Temperley, Peter W. Gething, Caroline Kabaria, Thomas R. Burkot, Ralph E. Harbach, Simon I. Hay
Software Mentions: 1
Published: over 12 years ago
10.3897/zookeys.186.2947
New species and distributional records of Aleocharinae (Coleoptera, Staphylinidae) from Ontario, Canada, with a checklist of recorded species
Cited by: 37
Author(s): Adam Brunke, Jan Klimaszewski, Julie-Anne Dorval, Caroline Bourdon, Steven M. Paiero, Stephen A. Marshall
Software Mentions: 1
Published: over 12 years ago
10.3390/bs11060084
Effects of a Mindfulness and Acceptance-Based Program on Intimate Relationships in a Youth Sample: A Randomized Controlled Trial
Cited by: 0
Author(s): María de Lourdes Rosales-Villacrés, Cristián Oyanadel, Diana Changotasig-Loja, Wenceslao Pénate Castro
Software Mentions: 1
Published: over 3 years ago
10.1186/s13024-018-0272-6
Polygenic analysis of inflammatory disease variants and effects on microglia in the aging brain
Cited by: 30
Author(s): Daniel Felsky, Ellis Patrick, Julie A. Schneider, Sara Mostafavi, Chris Gaiteri, Nikolaos A. Patsopoulos, David A. Bennett, Philip L. De Jager
Software Mentions: 1
Published: over 6 years ago
10.1136/bmjopen-2018-027016
Replacing meat with alternative plant-based products (RE-MAPs): protocol for a randomised controlled trial of a behavioural intervention to reduce meat consumption
Cited by: 9
Author(s): Fiammetta Rita Bianchi, Paul Aveyard, Nerys M. Astbury, Brian Cook, Emma Cartwright, Susan A. Jebb
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-11-291
Computational prediction of the osmoregulation network in Synechococcus sp. WH8102
Cited by: 15
Author(s): Xizeng Mao, Victor Olman, Rhona Stuart, Ian T. Paulsen, Brian Palenik, Ying Xu
Software Mentions: 1
Published: over 14 years ago
10.1186/1752-0509-5-S1-S9
Integrating multiple types of data to predict novel cell cycle-related genes
Cited by: 5
Author(s): Wei Lin, Lin Hou, Minping Qian, Fangting Li, Minghua Deng
Software Mentions: 1
Published: over 13 years ago
10.3390/microorganisms9010070
Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex Genomes
Cited by: 10
Author(s): Daniel Wibberg, Marian Price-Carter, Christian Rückert, Jochen Blom, Petra Möbius
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0007220
Analysis of Cancer Mutation Signatures in Blood by a Novel Ultra-Sensitive Assay: Monitoring of Therapy or Recurrence in Non-Metastatic Breast Cancer
Cited by: 40
Author(s): Zhenbin Chen, Jinong Feng, Carolyn H. Buzin, Qiang Liu, Lawrence M. Weiss, Kemp H. Kernstine, George Somlo, Steve S. Sommer
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0015326
Perinatal Asphyxia Affects Rat Auditory Processing: Implications for Auditory Perceptual Impairments in Neurodevelopmental Disorders
Cited by: 9
Author(s): Fabrizio Strata, Ivilin Stoianov, Étienne de Villers-Sidani, Ben H. Bonham, Tiziana Martone, Tal Kenet, Edward F. Chang, Vincenzo Vincenti, Michael M. Merzenich
Software Mentions: 1
Published: almost 14 years ago
10.3390/microorganisms8091380
Non-Tuberculous Mycobacteria: Molecular and Physiological Bases of Virulence and Adaptation to Ecological Niches
Cited by: 29
Author(s): André C. Pereira, Beatriz Ramos, Ana C. Reis, Mónica V. Cunha
Software Mentions: 1
Published: about 4 years ago
10.1186/s12888-017-1227-0
Relevance of a subjective quality of life questionnaire for long-term homeless persons with schizophrenia
Cited by: 5
Author(s): Vincent Girard, Aurélie Tinland, Jean‐Pierre Bonin, F. Olive, J. Poule, Christophe Lançon, Thémis Apostolidis, Michael Rowe, Tim Greacen, M.C. Simeoni
Software Mentions: 1
Published: over 7 years ago
10.1186/s12862-019-1490-4
PastView: a user-friendly interface to explore ancestral scenarios
Cited by: 4
Author(s): François Chevenet, Guillaume Castel, Emmanuelle Jousselin, Olivier Gascuel
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0228469
Simulating the council-specific impact of anti-malaria interventions: A tool to support malaria strategic planning in Tanzania
Cited by: 24
Author(s): Manuela Runge, Robert W. Snow, Fabrizio Molteni, Sumaiyya G. Thawer, Mohamed Amara, Renata Mandike, Emanuele Giorgi, Peter M. Macharia, T. Smith, Christian Lengeler, Emilie Pothin
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0161946
Systems Analysis of Early Host Gene Expression Provides Clues for Transient Mycobacterium avium ssp avium vs. Persistent Mycobacterium avium ssp paratuberculosis Intestinal Infections
Cited by: 11
Author(s): Sangeeta Khare, Kenneth L. Drake, Sara D. Lawhon, Jairo E. S. Nunes, Josely F. Figueiredo, C Rossetti, Tamara Gull, Robin E. Everts, Harris A. Lewin, L. Garry Adams
Software Mentions: 1
Published: about 8 years ago
10.1186/s12859-015-0686-x
InteMAP: Integrated metagenomic assembly pipeline for NGS short reads
Cited by: 20
Author(s): Binbin Lai, Fumeng Wang, Xiaoqi Wang, Liping Duan, Huaiqiu Zhu
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0016526
Considering Transposable Element Diversification in De Novo Annotation Approaches
Cited by: 411
Author(s): Timothée Flutre, Élodie Duprat, Catherine Feuillet, Hadi Quesneville
Software Mentions: 1
Published: almost 14 years ago