cran: ggmap | Projects | Ecosyste.ms: Papers

10.1186/s13071-021-04851-x

Data-driven and interpretable machine-learning modeling to explore the fine-scale environmental determinants of malaria vectors biting rates in rural Burkina Faso
Cited by: 9
Author(s): Paul Taconet, Angélique Porciani, Dieudonné Diloma Soma, Karine Mouline, Frédéric Simard, Alphonsine A. Koffi, Cédric Pennetier, Roch K. Dabiré, Morgan Mangeas, Nicolas Moiroux
Software Mentions: 21
Published: about 3 years ago

10.1371/journal.pone.0239842

A spatiotemporal comparison of length-at-age in the coral reef fish Acanthurus nigrofuscus between marine reserves and fished reefs
Cited by: 1
Author(s): Mathias T. Cramer, Robert Y. Fidler, Louis Penrod, Jessica Carroll, Ralph G. Turingan
Software Mentions: 20
Published: almost 4 years ago

10.1371/journal.pbio.3000673

“Frozen evolution” of an RNA virus suggests accidental release as a potential cause of arbovirus re-emergence
Cited by: 15
Author(s): David Pascall, Kyriaki Nomikou, Emmanuel Bréard, Stéphan Zientara, Ana da Silva Filipe, Bernd Hoffmann, Maude Jacquot, Joshua B. Singer, Kris De Clercq, Anette Bøtner, Corinne Sailleau, Cyril Viarouge, Carrie Batten, Giantonella Puggioni, Ciriaco Ligios, Giovanni Savini, Piet A. van Rijn, Peter Mertens, Roman Biek, Massimo Palmarini
Software Mentions: 18
Published: over 4 years ago

10.1155/2018/6587049

Data Association Methodology to Improve Spatial Predictions in Alternative Marketing Circuits in Ecuador
Cited by: 1
Author(s): Washington R. Padilla, Juan Francisco Blanco García
Software Mentions: 16
Published: almost 6 years ago

10.3390/insects10100321

Evaluation of NEON Data to Model Spatio-Temporal Tick Dynamics in Florida
Cited by: 5
Author(s): Geraldine Klarenberg, Samantha M. Wisely
Software Mentions: 14
Published: almost 5 years ago

10.1002/ece3.3240

feedrand animalnexus.ca: A paired R package and user-friendly Web application for transforming and visualizing animal movement data from static stations
Cited by: 9
Author(s): Steffi LaZerte, Matthew W. Reudink, Ken A. Otter, Jackson W. Kusack, Jacob Bailey, A. Woolverton, Mark Paetkau, Adriaan de Jong, David Hill
Software Mentions: 14
Published: about 7 years ago

10.1371/journal.pone.0193437

Delineating modern variation from extinct morphology in the fossil record using shells of the Eastern Box Turtle (Terrapene carolina)
Cited by: 8
Author(s): Natasha Vitek
Software Mentions: 13
Published: over 6 years ago

10.7554/eLife.67784

Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe
Cited by: 26
Author(s): Ella Katz, Jiajie Li, Benjamin Jaegle, Haim Ashkenazy, R. Shawn Abrahams, Clement Bagaza, Samuel Holden, Chris J Pires, Ruthie Angelovici, Daniel J. Kliebenstein
Software Mentions: 13
Published: over 3 years ago

10.7554/eLife.62587

Selfing is the safest sex for Caenorhabditis tropicalis
Cited by: 30
Author(s): Luke M. Noble, John G Yuen, Lewis Stevens, Nicolas Moya, Riaad Persaud, Marc Moscatelli, Jacqueline L. Jackson, Gaotian Zhang, Rojin Chitrakar, L. Ryan Baugh, Christian Braendle, Erik C. Andersen, Hannah S. Seidel, Matthew V. Rockman
Software Mentions: 13
Published: over 3 years ago

10.7717/peerj.5209

Distribution and ecological segregation on regional and microgeographic scales of the diploidCentaurea asperaL., the tetraploidC. seridisL., and their triploid hybrids (Compositae)
Cited by: 5
Author(s): Alfonso Garmendia, Hugo Merlé, Pablo L. Ruiz, M. Ferriol
Software Mentions: 11
Published: about 6 years ago

10.1371/journal.pone.0258031

High site-fidelity in common bottlenose dolphins despite low salinity exposure and associated indicators of compromised health
Cited by: 6
Author(s): Ryan Takeshita, Brian C. Balmer, Francesca Messina, Eric S. Zolman, Len Thomas, Randall S. Wells, Cynthia R. Smith, Teresa K. Rowles, Lori H. Schwacke
Software Mentions: 11
Published: almost 3 years ago

10.1017/S003329171800315X

A machine learning ensemble to predict treatment outcomes following an Internet intervention for depression
Cited by: 37
Author(s): Rahel Pearson, Derek Pisner, Björn Meyer, Jason Shumake, Christopher G. Beevers
Software Mentions: 11
Published: almost 6 years ago

10.1038/s41598-017-17728-w

Enclaves of genetic diversity resisted Inca impacts on population history
Cited by: 28
Author(s): Chiara Barbieri, José R. Sandoval, Jairo Valqui, Aviva Shimelman, Stefan Ziemendorff, Roland Schröder, Martin Geppert, Lutz Roewer, Russell D. Gray, Mark Stoneking, Ricardo Fujita, Paul Heggarty
Software Mentions: 11
Published: almost 7 years ago

10.1371/journal.pone.0233242

Determining soil particle-size distribution from infrared spectra using machine learning predictions: Methodology and modeling
Cited by: 4
Author(s): Élizabeth Parent, Léon‐Étienne Parent, Léon E. Parent
Software Mentions: 10
Published: about 3 years ago

10.1186/s12864-019-6324-7

Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study
Cited by: 9
Author(s): Minmin Li, Ying Liu, Yahan Tao, Chongjing Xu, Xin Li, Xiaoming Zhang, Yingpeng Han, Xue Yang, Jingzhe Sun, Wenbin Li, Dongmei Li, Xue Zhao, Lin Zhao
Software Mentions: 10
Published: almost 5 years ago

10.1093/gigascience/giaa060

SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
Cited by: 35
Author(s): Wenxi Wang, Zihao Wang, Xintong Li, Zhongfu Ni, Zhaorong Hu, Mingming Xin, Huiru Peng, Yingyin Yao, Qixin Sun, Weilong Guo
Software Mentions: 10
Published: over 4 years ago

10.1371/journal.pntd.0007360

Seasonal patterns of dengue fever in rural Ecuador: 2009-2016
Cited by: 12
Author(s): Rachel Sippy, Diego Herrera, David Gaus, Ronald E. Gangnon, Jonathan A. Patz, Jorge E. Osorio
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-019-52520-y

Naturally-primed life strategy plasticity of dimorphic Aethionema arabicum facilitates optimal habitat colonization
Cited by: 14
Author(s): Samik Bhattacharya, Katja Sperber, Barış Özüdoğru, Gerhard Leubner‐Metzger, Klaus Mummenhoff
Software Mentions: 10
Published: almost 5 years ago

10.1186/s13071-018-3066-3

Modelling the spatial distribution of aquatic insects (Order Hemiptera) potentially involved in the transmission of Mycobacterium ulcerans in Africa
Cited by: 9
Author(s): Jorge Cano, Antonio Rodrı́guez Rodrı́guez, Hamish Simpson, Earnest Njih Tabah, José Luís Graña Gómez, Rachel L. Pullan
Software Mentions: 10
Published: about 6 years ago

10.1038/s41598-020-71663-x

Discovering the indigenous microbial communities associated with the natural fermentation of sap from the cider gum Eucalyptus gunnii
Cited by: 12
Author(s): Cristián Varela, Joanna F. Sundstrom, Kathleen Cuijvers, Vladimir Jiranek, Anthony R. Borneman
Software Mentions: 10
Published: about 4 years ago

10.3390/ijerph18010318

Mapping the Scientific Landscape of Diabetes Research in Malaysia (2000–2018): A Systematic Scientometrics Study
Cited by: 5
Author(s): Kurubaran Ganasegeran, Chee Peng Hor, Mohd Fadzly Amar Jamil, Purnima Devi Suppiah, Juliana Mohd Noor, Norshahida Abdul Hamid, Deik Roy Chuan, Mohd Rizal Abdul Manaf, Alan Swee Hock Ch’ng, Irene Looi
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pntd.0006159

Barriers of attendance to dog rabies static point vaccination clinics in Blantyre, Malawi
Cited by: 30
Author(s): Stella Mazeri, Andrew D Gibson, Natascha Meunier, Barend M. deC. Bronsvoort, Ian Handel, Richard J. Mellanby, Luke Gamble
Software Mentions: 9
Published: over 6 years ago

10.1371/journal.pone.0240218

Spatio-temporal modeling of visceral leishmaniasis in Midwest Brazil: An ecological study of 18-years data (2001–2018)
Cited by: 5
Author(s): Everton Falcão de Oliveira, Alessandra Gutierrez de Oliveira, Carla Cardozo Pinto de Arruda, Wagner de Souza Fernandes, Márcio José de Medeiros
Software Mentions: 9
Published: almost 4 years ago

10.1186/s12942-021-00268-y

Locational privacy-preserving distance computations with intersecting sets of randomly labeled grid points
Cited by: 2
Author(s): Rainer Schnell, Jonas Klingwort, James Farrow
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0212024

Spatial and temporal development of deltamethrin resistance in malaria vectors of the Anopheles gambiae complex from North Cameroon
Cited by: 23
Author(s): Stanislas Mandeng, Herman Parfait Awono-Ambene, Jude D. Bigoga, Wolfgang Eyisap Ekoko, Achille Binyang, Michael Piameu, Lili Ranaise Mbakop, Betrand Nono Fesuh, Narcisse Mvondo, Raymond Tabue, Philippe Nwane, R. Mimpfoundi, Jean-Claude Toto, Immo Kleinschmidt, Tessa B. Knox, Abraham Mnzava, Martin J. Donnelly, Étienne Fondjo, Josiane Etang
Software Mentions: 9
Published: over 5 years ago

10.1186/1746-6148-10-71

EpiContactTrace: an R-package for contact tracing during livestock disease outbreaks and for risk-based surveillance
Cited by: 45
Author(s): Maria Nöremark, Stefan Widgrén
Software Mentions: 8
Published: over 10 years ago

10.3389/fneur.2019.00331

Googling Boundaries for Operating Mobile Stroke Unit for Stroke Codes
Cited by: 7
Author(s): Thanh G. Phan, Richard Beare, Mark Parsons, Henry Zhao, Stephen M. Davis, Geoffrey A. Donnan, Velandai Srikanth, Henry Ma
Software Mentions: 8
Published: over 5 years ago

10.1007/s00300-021-02823-6

Seasonal dynamics of meroplankton in a sub-Antarctic fjord (Southern Patagonia, Chile)
Cited by: 1
Author(s): Santiago E A Pineda-Metz, Américo Montiel
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0230262

So far, so good… Similar fitness consequences and overall energetic costs for short and long-distance migrants in a seabird
Cited by: 10
Author(s): David Pelletier, Yannick Seyer, Stefan Garthe, Salomé Bonnefoi, Richard A. Phillips, Magella Guillemette
Software Mentions: 8
Published: over 4 years ago

10.1186/s12862-018-1251-9

Molecular variation across populations of a widespread North American firefly, Photinus pyralis, reveals that coding changes do not underlie flash color variation or associated visual sensitivity
Cited by: 12
Author(s): Sarah E. Lower, Kathrin F. Stanger‐Hall, David W. Hall
Software Mentions: 8
Published: about 6 years ago

10.1186/s40168-018-0593-2

Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies
Cited by: 61
Author(s): Rachael E. Antwis, Jessica M. D. Lea, Bryony Unwin, Susanne Shultz
Software Mentions: 8
Published: almost 6 years ago

10.1093/gigascience/giz092

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Cited by: 112
Author(s): Alexander M. Piper, Jana Batovska, Noel O. I. Cogan, John Weiss, John Paul Cunningham, Brendan Rodoni, Mark J. Blacket
Software Mentions: 8
Published: about 5 years ago

10.1186/s13071-018-3280-z

Probability of dengue transmission and propagation in a non-endemic temperate area: conceptual model and decision risk levels for early alert, prevention and control
Cited by: 13
Author(s): Cecilia Marques-Toledo, Maria Mercedes de Almeida Bendati, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-020-67397-5

Genome-wide patterns of differentiation over space and time in the Queensland fruit fly
Cited by: 14
Author(s): Ángel David Popa-Báez, Renee A. Catullo, Siu Fai Lee, Heng Lin Yeap, Roslyn Mourant, Michael Frommer, J. A. Sved, Emilie Cameron, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 7
Published: about 4 years ago

10.3390/ijerph16214257

Spatiotemporal Patterns of Cholera Hospitalization in Vellore, India
Cited by: 4
Author(s): Aishwarya Venkat, Tania M. Alarcon Falconi, Melissa Cruz, Meghan A. Hartwick, Shalini Anandan, Naveen Kumar, Honorine D. Ward, Balaji Veeraraghavan, Elena N. Naumova
Software Mentions: 7
Published: almost 5 years ago

10.1111/mec.15287

Landscape drivers of genomic diversity and divergence in woodland Eucalyptus
Cited by: 29
Author(s): Kevin Murray, Jasmine K. Janes, Ashley Jones, Helen M. Bothwell, Rose L. Andrew, Justin O. Borevitz
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pntd.0005729

Dengue prediction by the web: Tweets are a useful tool for estimating and forecasting Dengue at country and city level
Cited by: 70
Author(s): Cecilia Marques-Toledo, Carolin Marlen Degener, Livia Vinhal, Giovanini Evelim Coelho, Wagner Meira, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-019-42638-4

A systematic study towards evolutionary and epidemiological dynamics of currently predominant H5 highly pathogenic avian influenza viruses in Vietnam
Cited by: 14
Author(s): Lam T. Nguyen, Simon M. Firestone, Mark Stevenson, Neil D. Young, L. D. Sims, Duc Huy Chu, Tien Ngoc Nguyen, Long Giang Nguyen, Tung Thanh Le, Hung Van Nguyen, Hung N. Nguyen, Tien Ngoc Tien, Tho Dang Nguyen, Bryant Tran, Keita Matsuno, Masatoshi Okamatsu, Hiroshi Kida, Yoshihiro Sakoda
Software Mentions: 7
Published: over 5 years ago

10.1111/mec.14470

Landscape attributes governing local transmission of an endemic zoonosis: Rabies virus in domestic dogs
Cited by: 50
Author(s): Kirstyn Brunker, Philippe Lemey, Denise A. Marston, Anthony R. Fooks, Ahmed Lugelo, Chanasa Ngeleja, Katie Hampson, Roman Biek
Software Mentions: 7
Published: over 6 years ago

10.1186/s12942-019-0177-9

Using data from online geocoding services for the assessment of environmental obesogenic factors: a feasibility study
Cited by: 13
Author(s): Maximilian Präger, Christoph Kurz, Julian Böhm, Michael Laxy, Werner Maier
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.4460

Breath rate of passerines across an urbanization gradient supports the pace-of-life hypothesis and suggests diet-mediated responses to handling stress
Cited by: 6
Author(s): Dan Liang, Chao He, Xu Luo, Yang Liu, Eben Goodale, Emilio Pagani‐Núñez
Software Mentions: 7
Published: about 6 years ago

10.1186/s12879-016-1475-5

DotMapper: an open source tool for creating interactive disease point maps
Cited by: 17
Author(s): Catherine M. Smith, Andrew Hayward
Software Mentions: 7
Published: over 8 years ago

10.7717/peerj.7863

Manx shearwater (Puffinus puffinus) rafting behaviour revealed by GPS tracking and behavioural observations
Cited by: 6
Author(s): Cerren Richards, Oliver Padget, Tim Guilford, Amanda E. Bates
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0250783

Investigating variability in microbial community composition in replicate environmental DNA samples down lake sediment cores
Cited by: 12
Author(s): John K. Pearman, Georgia Thomson‐Laing, Jamie Howarth, Marcus J. Vandergoes, L. M. Thompson, Andrew Rees, Susanna A. Wood
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-018-25234-w

Seasonal dynamics of typhoid and paratyphoid fever
Cited by: 38
Author(s): Neil J. Saad, Victoria D. Lynch, Marina Antillón, Chongguang Yang, John A. Crump, Virginia E. Pitzer
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0179261

Monitoring of noble, signal and narrow-clawed crayfish using environmental DNA from freshwater samples
Cited by: 73
Author(s): Sune Agersnap, William Brenner Larsen, Steen Wilhelm Knudsen, David Strand, Philip Francis Thomsen, Martin Hesselsøe, Peter Mortensen, Trude Vrålstad, Peter Rask Møller
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.ppat.1009537

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor
Cited by: 17
Author(s): Jay Vornhagen, Christine M. Bassis, S. Ramakrishnan, Robert Hein, Sophia Mason, Yehudit Bergman, Nicole Sunshine, Yunfan Fan, Caitlyn L. Holmes, Winston Timp, Michael C. Schatz, Vincent B. Young, Patricia J. Simner, Michael A. Bachman
Software Mentions: 7
Published: over 3 years ago

10.1038/s42003-019-0719-5

Genetic variation drives seasonal onset of hibernation in the 13-lined ground squirrel
Cited by: 25
Author(s): Katharine R. Grabek, Thomas F. Cooke, L. Elaine Epperson, Kaitlyn Spees, Gleyce Fonseca Cabral, Shirley Sutton, Dana K. Merriman, Sandra L. Martin, Carlos D. Bustamante
Software Mentions: 7
Published: over 4 years ago

10.1186/s40168-018-0595-0

Skin and gut microbiomes of a wild mammal respond to different environmental cues
Cited by: 38
Author(s): Anton Lavrinienko, Eugene Tukalenko, Tapio Mappes, Phillip C. Watts
Software Mentions: 7
Published: almost 6 years ago

10.12688/f1000research.16032.3

epiflows: an R package for risk assessment of travel-related spread of disease
Cited by: 3
Author(s): Paula Moraga, Ilaria Dorigatti, Zhian N. Kamvar, Paweł Piątkowski, Salla Toikkanen, VP Nagraj, Christl A. Donnelly, Thibaut Jombart
Software Mentions: 7
Published: about 5 years ago

10.1002/ece3.3943

Seasonal bat activity related to insect emergence at three temperate lakes
Cited by: 26
Author(s): Ioanna Salvarina, Dorian Gravier, Karl‐Otto Rothhaupt
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2021.685937

Metagenomic Survey of the Highly Polyphagous Anastrepha ludens Developing in Ancestral and Exotic Hosts Reveals the Lack of a Stable Microbiota in Larvae and the Strong Influence of Metamorphosis on Adult Gut Microbiota
Cited by: 10
Author(s): Martı́n Aluja, Jesús Alejandro Zamora‐Briseño, Vicente Pérez‐Brocal, Alma Altúzar-Molina, Larissa Guillén, Damaris Desgarennes, Mirna Vázquez-Rosas-Landa, Enrique Ibarra-Laclette, Alexandro Alonso-Sánchez, Andrés Moya
Software Mentions: 7
Published: about 3 years ago

10.1186/s12864-021-07544-y

Comparative analysis of chloroplast genomes of cultivars and wild species of sweetpotato (Ipomoea batatas [L.] Lam)
Cited by: 14
Author(s): Shizhuo Xiao, Pao Xu, Yitong Deng, Xiaofeng Dai, Lukuan Zhao, Bettina Heider, An Zhang, Zhiguang Zhou, Qinghe Cao
Software Mentions: 7
Published: over 3 years ago

10.3389/fpls.2019.01099

Alder Distribution and Expansion Across a Tundra Hillslope: Implications for Local N Cycling
Cited by: 32
Author(s): V. G. Salmon, A. L. Breen, Jitendra Kumar, Mark J. Lara, P. E. Thornton, Stan D. Wullschleger, Colleen M. Iversen
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0240565

Exploring aflatoxin contamination and household-level exposure risk in diverse Indian food systems
Cited by: 8
Author(s): Anthony J. Wenndt, H. Sudini, Prabhu Pingali, Rebecca Nelson
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pntd.0008616

Predicting the environmental suitability and population at risk of podoconiosis in Africa
Cited by: 8
Author(s): Kebede Deribe, Hamish Simpson, Rachel L. Pullan, Mbonigaba Jean Bosco, Samuel Wanji, Nicole Davis Weaver, Christopher J L Murray, Melanie Newport, Simon I. Hay, Gail Davey, Jorge Cano
Software Mentions: 6
Published: about 4 years ago

10.1186/s12889-021-10491-8

An analysis of COVID-19 clusters in India
Cited by: 10
Author(s): Pooja Sengupta, Bhaswati Ganguli, Sugata SenRoy, Amlan Chatterjee
Software Mentions: 6
Published: over 3 years ago

10.1093/g3journal/jkab274

Admixture mapping reveals loci for carcass mass in red deer x sika hybrids in Kintyre, Scotland
Cited by: 1
Author(s): S. Eryn McFarlane, Josephine M. Pemberton
Software Mentions: 6
Published: about 3 years ago

10.3390/plants9111446

The Genetic Diversity of Cranberry Crop Wild Relatives, Vaccinium macrocarpon Aiton and V. oxycoccos L., in the US, with Special Emphasis on National Forests
Cited by: 12
Author(s): Lorraine Rodríguez-Bonilla, Karen A. Williams, Fabian Rodríguez Bonilla, Daniel Matusinec, Andrew J. Maule, Kevin Coe, Eric Wiesman, Luis Díaz-Garcia, Juan Zalapa
Software Mentions: 6
Published: almost 4 years ago

10.3389/fphys.2021.622987

Olfactory Dysfunction in Frontline Health Care Professionals During COVID-19 Pandemic in Brazil
Cited by: 7
Author(s): Mariana Ferreira Sbrana, Marco Aurélio Fornazieri, Alexandre Bruni‐Cardoso, Vivian Iida Avelino‐Silva, Deborah Schechtman, Richard Louis Voegels, Bettina Malnic, Isaías Glezer, Fábio de Rezende Pinna
Software Mentions: 6
Published: over 3 years ago

10.7717/peerj.10237

Use of next generation sequencing to compare simple habitat and species level differences in the gut microbiota of an invasive and native freshwater fish species
Cited by: 4
Author(s): Benjamin D. Gallo, John M. Farrell, Brian F. Leydet
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-018-37503-9

Combining MALDI-TOF and genomics in the study of methicillin resistant and multidrug resistant Staphylococcus pseudintermedius in New Zealand
Cited by: 30
Author(s): Shahista Nisa, Clément Bercker, Anne C. Midwinter, Ian J. Bruce, Chris Graham, Pierre Venter, A Bell, Nigel P. French, Jackie Benschop, Karen M. Bailey, David A. Wilkinson
Software Mentions: 6
Published: over 5 years ago

10.3390/jof7040249

Improvements in the Resistance of the Banana Species to Fusarium Wilt: A Systematic Review of Methods and Perspectives
Cited by: 15
Author(s): Anelita de Jesus Rocha, Julianna Matos da Silva Soares, Fernanda dos Santos Nascimento, Adriadna Souza Santos, Vanusia Batista de Oliveira Amorim, Cláudia Fortes Ferreira, Fernando Haddad, Janay Almeida dos Santos-Serejo, Édson Perito Amorim
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-019-39576-6

Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
Cited by: 57
Author(s): Laetitia G. E. Wilkins, Cassandra L. Ettinger, Guillaume Jospin, Jonathan A. Eisen
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0220953

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
Cited by: 67
Author(s): Mehrdad Hajibabaei, Teresita M. Porter, Michael Wright, Josip Rudar
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0255140

Comparative Y-chromosome analysis among Cypriots in the context of historical events and migrations
Cited by: 1
Author(s): Irene Moutsouri, Anna Keravnou, Panayiotis Manoli, Stefania Bertoncini, Kyriaki Michailidou, Vasilis Christofi, Stavroulla Xenophontos, Marios A. Cariolou, Evy Bashiardes
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-020-80190-8

Speech adapts to differences in dentition within and across populations
Cited by: 8
Author(s): Caleb Everett, Sihan Chen
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-67209-w

Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence
Cited by: 5
Author(s): Jessica A. Goodheart, Geetanjali Minsky, Mira N. Brynjegard-Bialik, Michael S. Drummond, Jacqueline Muñoz, Timothy R. Fallon, Darrin T. Schultz, Jing‐Ke Weng, Elizabeth Torres, Todd H. Oakley
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pntd.0008046

Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages
Cited by: 15
Author(s): Haoqiu Wang, Chao Yang, Sun Zhou, Wei Zheng, Wei Zhang, Hua Yu, Yarong Wu, Xavier Didelot, Ruifu Yang, Jinren Pan, Yu‐Jun Cui
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-021-81332-2

Low serum total CO2 and its association with mortality in patients being followed up in the nephrology outpatients clinic
Cited by: 0
Author(s): Kyung Don Yoo, Jung Nam An, Yong Chul Kim, Jeonghwan Lee, Kwon Wook Joo, Yun Kyu Oh, Yon Su Kim, Chun Soo Lim, Sohee Oh, Jung Pyo Lee
Software Mentions: 5
Published: over 3 years ago

10.1029/2020GH000260

Associations Between Dust Storms and Intensive Care Unit Admissions in the United States, 2000–2015
Cited by: 14
Author(s): Caitlin Rublee, Cecilia Sorensen, Jay Lemery, Timothy J. Wade, Elizabeth Sams, Elizabeth D. Hilborn, James Crooks
Software Mentions: 5
Published: about 4 years ago

10.1089/fpd.2017.2411

Are Food Animals Responsible for Transfer of Antimicrobial-ResistantEscherichia colior Their Resistance Determinants to Human Populations? A Systematic Review
Cited by: 109
Author(s): Dishon Muloi, Melissa J. Ward, Amy B. Pedersen, Eric M. Fèvre, Mark Woolhouse, Bram A. D. van Bunnik
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-63274-3

Epidemiological and aetiological characteristics of hand, foot, and mouth disease in Sichuan Province, China, 2011–2017
Cited by: 15
Author(s): Di Peng, Yue Ma, Yaqiong Liu, Qiang Lv, Fei Yin
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.7085

Evidence of postbreeding prospecting in a long‐distance migrant
Cited by: 7
Author(s): Max Ciaglo, Ross Calhoun, Scott W. Yanco, Michael B. Wunder, Craig A. Stricker, Brian D. Linkhart
Software Mentions: 5
Published: almost 4 years ago

10.1002/ece3.7684

Expansion of rDNA and pericentromere satellite repeats in the genomes of bank voles Myodes glareolus exposed to environmental radionuclides
Cited by: 4
Author(s): Toni Jernfors, John M Danforth, Jenni Kesäniemi, Anton Lavrinienko, Eugene Tukalenko, Jiřı́ Fajkus, Martina Dvořáčková, Johanna Mappes, Phillip C. Watts
Software Mentions: 5
Published: over 3 years ago

10.1016/j.eclinm.2020.100631

Risk factors associated with suicide clusters in Australian youth: Identifying who is at risk and the mechanisms associated with cluster membership
Cited by: 6
Author(s): Nicole T. M. Hill, Matthew J Spittal, Jane Pirkis, Michelle Torok, Jo Robinson
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0212214

Building geochemically based quantitative analogies from soil classification systems using different compositional datasets
Cited by: 2
Author(s): Mark A. Chappell, Jennifer M. Seiter, Haley M. West, Brian Durham, Beth E. Porter, Cynthia B. Price
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.8327

Obesity in the Balinese is associated with FTO rs9939609 and rs1421085 single nucleotide polymorphisms
Cited by: 5
Author(s): Lidwina Priliani, Sukma Oktavianthi, Ria Hasnita, Hazrina T. Nussa, Rut Christine Inggriani, Clarissa A. Febinia, Anom Bowolaksono, Rini Puspitaningrum, Rully Adi Nugroho, Ketut Suastika, Safarina G. Malik
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2019.01714

Temperature Response of Planktonic Microbiota in Remote Alpine Lakes
Cited by: 9
Author(s): Yiming Jiang, Haiying Huang, Ting Ma, Jinlong Ru, Stephan Blank, Rainer Kurmayer, Li Deng
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-82145-z

Social media reveal ecoregional variation in how weather influences visitor behavior in U.S. National Park Service units
Cited by: 18
Author(s): Emily J. Wilkins, Peter D. Howe, Jordan W. Smith
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-80151-1

Dispersal and competitive release affect the management of native and invasive tephritid fruit flies in large and smallholder farms in Ethiopia
Cited by: 3
Author(s): Tibebe Dejene Biasazin, Tadiwos W. Wondimu, Sebastian Larsson Herrera, Mattias C. Larsson, Agenor Mafra‐Neto, Yitbarek W. Gessese, Teun Dekker
Software Mentions: 5
Published: over 3 years ago

10.3390/pathogens10050499

Plasmodiophora brassicae Inoculum Density and Spatial Patterns at the Field Level and Relation to Soil Characteristics
Cited by: 7
Author(s): Andrea Botero-Ramírez, Sheau‐Fang Hwang, Stephen E. Strelkov
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0161621

Evaluation of the Performance of Five Diagnostic Tests for Fasciola hepatica Infection in Naturally Infected Cattle Using a Bayesian No Gold Standard Approach
Cited by: 54
Author(s): Stella Mazeri, Neil Sargison, Robert F. Kelly, Barend M. deC. Bronsvoort, Ian Handel
Software Mentions: 5
Published: about 8 years ago

10.1099/mgen.0.000539

Population structure and transmission of Mycobacterium bovis in Ethiopia
Cited by: 8
Author(s): Gizat Almaw, Getnet Abie Mekonnen, Adane Mihret, Abraham Aseffa, Hawult Taye, Andrew J. K. Conlan, Balako Gumi, Aboma Zewude, Abde Aliy, Mekdes Tamiru, Abebe Olani, Matios Lakew, Melaku Sombo, Solomon Gebre, Colette Diguimbaye, Markus Hilty, Adama Fané, Borna Müller, R. Glyn Hewinson, Richard J. Ellis, Javier Núñez-García, Eleftheria Palkopoulou, Tamrat Abebe, Gobena Ameni, Julian Parkhill, James Wood, Stefan Berg, Andries J. van Tonder
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-97227-1

Detecting anchored fish aggregating devices (AFADs) and estimating use patterns from vessel tracking data in small-scale fisheries
Cited by: 6
Author(s): Ahmad Catur Widyatmoko, Britta Denise Hardesty, Chris Wilcox
Software Mentions: 5
Published: about 3 years ago

10.1186/s40575-020-00094-8

The usage of Mate Select, a web-based selection tool for pedigree dogs for promoting sustainable breeding
Cited by: 0
Author(s): Mateja Janeš, Thomas W. Lewis, Joanna J. Ilska, John Woolliams
Software Mentions: 5
Published: almost 4 years ago

10.3402/gha.v9.31500

Effect modification in the temperature extremes by mortality subgroups among the tropical cities of the Philippines
Cited by: 16
Author(s): Xerxes Seposo, Trần Ngọc Đăng, Yasushi Honda
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-017-10576-8

Plant litter dynamics in the forest-stream interface: precipitation is a major control across tropical biomes
Cited by: 91
Author(s): Alan M. Tonin, José F. Gonçalves, Paulino Bambi, Sheyla Regina Marques Couceiro, Lorrane A. M. Feitoza, Lucas Eugênio Fontana, Neusa Hamada, Luiz Ubiratan Hepp, Vânia G. Lezan-Kowalczuk, Gustavo Figueiredo Marques Leite, Aurea Luiza Lemes-Silva, Leonardo Kleba Lisboa, Rafael Chaves Loureiro, Renato Tavares Martins, Adriana O. Medeiros, Paula B. Morais, Yara Moretto, Patrícia C. A. Oliveria, Evelyn B. Pereira, Lidiane P. Ferreira, Javier Jiménez Pérez, Maurício Mello Petrucio, Deusiano Florêncio dos Reis, Renan de Souza Rezende, Nádia Roque, Luiz E. P. Santos, Ana Emília Siegloch, Gabriela Tonello, Luz Boyero
Software Mentions: 5
Published: about 7 years ago

10.1038/s41396-020-0669-4

Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation
Cited by: 96
Author(s): Zhichao Zhou, Patricia Q. Tran, Kristopher Kieft, Karthik Anantharaman
Software Mentions: 5
Published: over 4 years ago

10.3390/v11110993

Pan-European Study on the Prevalence of the Feline Leukaemia Virus Infection – Reported by the European Advisory Board on Cat Diseases (ABCD Europe)
Cited by: 43
Author(s): Nadine Studer, Hans Lutz, Claude Saegerman, Enikő Gönczi, Marina L. Meli, Gianluca Boo, Katrin Hartmann, Margaret J. Hosie, K. Moestl, Séverine Tasker, Sándor Bélak, Albert Lloret, Corine Boucraut-Baralon, Herman Egberink, Maria Grazia Pennisi, Uwe Truyen, Tadeusz Frymus, Étienne Thiry, Fulvio Marsilio, Diane Addie, Manfred Hochleithner, Filip Tkalec, Zsuzsanna Vizi, Anna Elisabetta Brunetti, Boyko B. Georgiev, Louisa F. Ludwig‐Begall, F Tschuor, Carmel T. Mooney, Catarina Eliasson, Janne Orro, Helle Krogh Johansen, Kirsi Juuti, Igor Krampl, Kaspars Kovaļenko, Jakov Šengaut, Cristina Sobral, Petra Borska, Simona Kovaříková, Regina Hofmann‐Lehmann
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0254254

Seasonal and diel activity patterns of the endangered taiga bean goose (Anser fabalis fabalis) during the breeding season, monitored with camera traps
Cited by: 2
Author(s): Milaja Nykänen, Hannu Pöysä, Sari Hakkarainen, Tiina Rajala, Juho Matala, Mervi Kunnasranta
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0240706

Breeding and hibernation of captive meadow jumping mice (Zapus hudsonius)
Cited by: 3
Author(s): Ethan A. Brem, Alyssa D. McNulty, William J. Israelsen
Software Mentions: 4
Published: over 3 years ago

10.1186/s40462-016-0077-6

Effects of geolocators on hatching success, return rates, breeding movements, and change in body mass in 16 species of Arctic-breeding shorebirds
Cited by: 48
Author(s): Emily L. Weiser, Richard B. Lanctot, Stephen C. Brown, José A. Alves, Phil F. Battley, Rebecca L. Bentzen, Joël Bêty, Mary Anne Bishop, Megan L. Boldenow, Loı̈c Bollache, Bruce Casler, Maureen Christie, Jonathan T. Coleman, Jesse R. Conklin, Willow B. English, H. River Gates, Olivier Gilg, Marie‐Andrée Giroux, Ken Gosbell, Chris J. Hassell, Jim Helmericks, Andrew C. Johnson, Borgný Katrínardóttir, Kari Koivula, Eunbi Kwon, Jean‐François Lamarre, Johannes Lang, David B. Lank, Nicolas Lecomte, Joseph R. Liebezeit, Vanessa Loverti, Laura McKinnon, Clive Minton, David Mizrahi, Erica Nol, Veli‐Matti Pakanen, Johanna Perz, Ron Porter, Jennie Rausch, Jeroen Reneerkens, Nelli Rönkä, Sarah T. Saalfeld, Nathan R. Senner, Benoît Sittler, Paul A. Smith, Kristine M. Sowl, Audrey Taylor, David H. Ward, Stephen M. Yezerinac, Brett K. Sandercock
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pntd.0004636

Zika Virus Outbreak in Rio de Janeiro, Brazil: Clinical Characterization, Epidemiological and Virological Aspects
Cited by: 239
Author(s): Patrícia Brasil, Guilherme Amaral Calvet, André Machado Siqueira, Mayumi Duarte Wakimoto, Patrícia Carvalho de Sequeira, Aline Araújo Nobre, Marcel de Souza Borges Quintana, Marco Cesar Lima de Mendonça, Otília Lupi, Rogério Valls de Souza, Carolina Romero, Heruza Einsfeld Zogbi, Clarisse da Silveira Bressan, Simone Sampaio Alves, Ricardo Lourenço‐de‐Oliveira, Rita Maria Ribeiro Nogueira, Marília Sá Carvalho, Ana María Bispo de Filippis, Thomas Jaenisch
Software Mentions: 4
Published: over 8 years ago

10.1111/mec.16029

The impact of indoor residual spraying on Plasmodium falciparum microsatellite variation in an area of high seasonal malaria transmission in Ghana, West Africa
Cited by: 5
Author(s): Dionne C. Argyropoulos, Shazia Ruybal‐Pesántez, Samantha Deed, Abraham Oduro, Samuel Dadzie, Maxwell A. Appawu, Victor Asoala, Mercedes Pascual, Kwadwo A. Koram, Karen P. Day, Kathryn E. Tiedje
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pgen.1008900

A novel allele of ASY3 is associated with greater meiotic stability in autotetraploid Arabidopsis lyrata
Cited by: 25
Author(s): Paul J. Seear, Catherine L. Gregory, Darren Heavens, Roswitha Schmickl, Levi Yant, James D. Higgins
Software Mentions: 4
Published: about 4 years ago

10.1186/s12864-017-3931-z

Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)
Cited by: 15
Author(s): Irina Ćalić, Jennifer Koch, David W. Carey, Charles Addo‐Quaye, John E. Carlson, David B. Neale
Software Mentions: 4
Published: about 7 years ago

Projects: cran: ggmap

Papers Mentioning ggmap 213