cran: analyzer | Projects | Ecosyste.ms: Papers

10.1007/s11214-018-0576-4

The Space Physics Environment Data Analysis System (SPEDAS)
Cited by: 295
Author(s): V. Angelopoulos, P. Cruce, Alexander Drozdov, E. W. Grimes, Nick Hatzigeorgiu, David A. King, D. E. Larson, James W. Lewis, J. M. McTiernan, D. A. Roberts, Chuck Russell, Tomoaki Hori, Yoshiya Kasahara, Atsushi Kumamoto, A. Matsuoka, Yukinaga Miyashita, Yoshizumi Miyoshi, I. Shinohara, Masaaki Teramoto, J. Faden, A. J. Halford, Michael McCarthy, R. M. Millan, J. G. Sample, David M. Smith, L. A. Woodger, A. Masson, Ayris Narock, Kazushi Asamura, T. F. Chang, Che‐Ming Chiang, Y. Kazama, K. Keika, Shoya Matsuda, Takehiko Segawa, K. Seki, Shoji Motomizu, Sunny Wing-Yee Tam, Norio Umemura, B. J. Wang, S. Y. Wang, R. J. Redmon, J. V. Rodriguez, H. J. Singer, J. D. Vandegriff, Shuji Abe, M. Nosé, Atsuki Shinbori, Yoshimasa Tanaka, S. Ueno, L. Andersson, P. Dunn, Christopher Fowler, J. S. Halekas, Takuya Hara, Yuki Harada, C. O. Lee, R. J. Lillis, D. L. Mitchell, M. R. Argall, K. R. Bromund, J. L. Burch, I. J. Cohen, Michael Galloy, B. L. Giles, A. N. Jaynes, O. Le Contel, M. Oka, T. D. Phan, Brian M. Walsh, J. H. Westlake, F. D. Wilder, S. D. Bale, R. Livi, M. Pulupa, P. L. Whittlesey, A. W. DeWolfe, B. Harter, Edson Mello Lucas, U. Auster, J. W. Bonnell, C. M. Cully, E. Donovan, R. E. Ergun, H. U. Frey, B. J. Jackel, A. Keiling, H. Korth, J. P. McFadden, Yoshihiro Nishimura, Ferdinand Plaschke, P. Robert, D. L. Turner, J. M. Weygand, R. M. Candey, Russell D. Johnson, T. J. Kovalick, M. H. Liu, R. E. McGuire, A. W. Breneman, K. Kersten, P. Schroeder
Software Mentions: 11
Published: almost 6 years ago

10.1371/journal.pone.0252488

PlateEditor: A web-based application for the management of multi-well plate layouts and associated data
Cited by: 2
Author(s): Vincent Delorme, Minjeong Woo, Virgínia Carla de Almeida Falcão, Connor Wood
Software Mentions: 10
Published: over 3 years ago

10.1172/jci.insight.140443

Versatile workflow for cell type–resolved transcriptional and epigenetic profiles from cryopreserved human lung
Cited by: 6
Author(s): Maria Llamazares Prada, Elisa Espinet, Vedrana Mijošek, Uwe Schwartz, Pavlo Lutsik, Raluca Tamas, Mandy Richter, Annika Behrendt, Stephanie Pohl, Naja P. Benz, Thomas Muley, Arne Warth, Claus Peter Heusel, Hauke Winter, Jonathan Landry, Felix J.F. Herth, Tinne Mertens, Harry Karmouty‐Quintana, Ina Koch, Vladimı́r Beneš, Jan O. Korbel, Sebastian M. Waszak, Andreas Trumpp, David Wyatt, Heiko Stahl, Christoph Plass, Renata Z. Jurkowska
Software Mentions: 9
Published: almost 4 years ago

10.3390/ijerph18115564

Identification of Hub Genes in Different Stages of Colorectal Cancer through an Integrated Bioinformatics Approach
Cited by: 2
Author(s): Abhijeet R. Patil, Ming-Ying Leung, Sourav Roy
Software Mentions: 8
Published: over 3 years ago

10.7554/eLife.65369

Surprising phenotypic diversity of cancer-associated mutations of Gly 34 in the histone H3 tail
Cited by: 18
Author(s): Brandon R Lowe, Rajesh K Yadav, Ryan A. Henry, Patrick Schreiner, Atsushi Matsuda, Alfonso G. Fernandez, David Finkelstein, Margaret Campbell, Satish Kallappagoudar, Carolyn M Jablonowski, Andrew J. Andrews, Yasushi Hiraoka, Janet F. Partridge
Software Mentions: 6
Published: almost 4 years ago

10.3390/s21020488

CMOS Image Sensors in Surveillance System Applications
Cited by: 16
Author(s): Susrutha Babu Sukhavasi, Khaled Elleithy, Abdelshakour Abuzneid, Abdelrahman Elleithy
Software Mentions: 6
Published: almost 4 years ago

10.1111/1755-0998.13205

A new method of metabarcoding Microsporidia and their hosts reveals high levels of microsporidian infections in mosquitoes (Culicidae)
Cited by: 25
Author(s): Artur Trzebny, Anna Słodkowicz-Kowalska, James J. Becnel, Neil D. Sanscrainte, Mirosława Dabert
Software Mentions: 6
Published: over 4 years ago

10.1186/1752-0509-6-2

Systems analysis of the transcriptional response of human ileocecal epithelial cells to Clostridium difficile toxins and effects on cell cycle control
Cited by: 15
Author(s): Kevin M. D’Auria, Gina M. Donato, Mary C. Gray, Glynis L. Kolling, Cirle A. Warren, Lauren M Cave, Michael D. Solga, Joanne Lannigan, Jason A. Papin, Erik L. Hewlett
Software Mentions: 5
Published: almost 13 years ago

10.1002/pld3.142

Tomato locule number and fruit size controlled by natural alleles of lc and fas
Cited by: 61
Author(s): Yi Hsuan Chu, Jyan Chyun Jang, Zejun Huang, Esther van der Knaap
Software Mentions: 5
Published: over 5 years ago

10.1186/s12863-015-0313-x

Filtering genetic variants and placing informative priors based on putative biological function
Cited by: 4
Author(s): Stefanie Friedrichs, Dörthe Malzahn, Elizabeth Pugh, Marcio Almeida, Xiao Qing Liu, Julia N. Bailey
Software Mentions: 5
Published: almost 9 years ago

10.3389/fpls.2021.660303

Elucidation of Novel cis-Regulatory Elements and Promoter Structures Involved in Iron Excess Response Mechanisms in Rice Using a Bioinformatics Approach
Cited by: 16
Author(s): Yusuke Kakei, Hiroshi Masuda, Naoko K. Nishizawa, Hiroyuki Hattori, May Sann Aung
Software Mentions: 5
Published: over 3 years ago

10.1186/1471-2105-12-27

CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes
Cited by: 25
Author(s): Franck Gauthier, O. C. Martin, Matthieu Falque
Software Mentions: 4
Published: almost 14 years ago

10.18632/oncotarget.10052

Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs
Cited by: 71
Author(s): Jie Li, Kecheng Lei, Zengrui Wu, Weihua Li, Guixia Liu, Jianwen Liu, Feixiong Cheng, Yun Tang
Software Mentions: 4
Published: over 8 years ago

10.1016/j.mex.2019.100775

PHARMIP: An insilico method to predict genetics that underpin adverse drug reactions
Cited by: 6
Author(s): Ahmad Zidan, Eman A. Saad, Nasser E. Ibrahim, Amal Mahmoud, Medhat H. Hashem, Alaa A. Hemeida
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijms20082038

Preeclampsia is Associated with Sex-Specific Transcriptional and Proteomic Changes in Fetal Erythroid Cells
Cited by: 15
Author(s): Zahra Masoumi, Grégory E. Maes, Koen Herten, Álvaro Cortés-Calabuig, Abdul Ghani Alattar, Eva Hanson, Lena Erlandsson, Éva Mezey, Mattias Magnusson, Joris Robert Vermeesch, Mary Familari, Stefan R. Hansson
Software Mentions: 4
Published: over 5 years ago

10.1186/s13104-018-3802-y

Empowering the detection of ChIP-seq “basic peaks” (bPeaks) in small eukaryotic genomes with a web user-interactive interface
Cited by: 3
Author(s): Thomas Denecker, Gaëlle Lelandais
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2105-13-166

Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation
Cited by: 10
Author(s): George Golovko, Kamil Khanipov, Mark Rojas, Antonio Martínez-Alcántara, Jesse J. Howard, Efren Ballesteros, Sharu Gupta, William R. Widger, Yuriy Fofanov
Software Mentions: 4
Published: over 12 years ago

10.1186/s13104-017-2424-0

Quantitative morphological analysis of 2D images of complex-shaped branching biological growth forms: the example of branching thalli of liverworts
Cited by: 3
Author(s): Pirom Konglerd, Catherine Reeb, Fredrik Jansson, Jaap A. Kaandorp
Software Mentions: 4
Published: almost 8 years ago

10.1126/sciadv.abe6534

Storywrangler: A massive exploratorium for sociolinguistic, cultural, socioeconomic, and political timelines using Twitter
Cited by: 19
Author(s): Thayer Alshaabi, Jane Lydia Adams, Michael Vincent Arnold, Joshua R. Minot, David Rushing Dewhurst, Andrew J. Reagan, Christopher M. Danforth, Peter Sheridan Dodds
Software Mentions: 4
Published: over 3 years ago

10.1128/mSphereDirect.00120-18

Zika Virus Infection Preferentially Counterbalances Human Peripheral Monocyte and/or NK Cell Activity
Cited by: 26
Author(s): Fok‐Moon Lum, David Lee, Tze-Kwang Chua, Jeslin J. L. Tan, Cheryl Yi‐Pin Lee, Xuan Li, Yongxiang Fang, Bernett Lee, Wearn‐Xin Yee, Natasha Y. Rickett, Po Ying Chia, Vanessa Lim, Yee‐Sin Leo, David A. Matthews, Julian A. Hiscox, Lisa F. P. Ng
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1005848

A Founder Mutation in VPS11 Causes an Autosomal Recessive Leukoencephalopathy Linked to Autophagic Defects
Cited by: 47
Author(s): Jinglan Zhang, Véronik Lachance, Adam D. Schaffner, Xianting Li, Anastasia Fedick, Lauren E. Kaye, Jun Liao, Jill A. Rosenfeld, Naomi Yachelevich, Mary Lynn Chu, Wendy G. Mitchell, Richard G. Boles, Ellen Moran, Mari Tokita, Elizabeth Gorman, Kaytee Bagley, Wei Zhang, Fan Xia, Magalie S. Leduc, Yaping Yang, Christine M. Eng, Lee Jun Wong, Raphael Schiffmann, George A. Diaz, Ruth Kornreich, Ryan Thummel, Melissa P. Wasserstein, Zhenyu Yue, Lisa Edelmann
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.01725

Phylogenetic Relationships and Potential Functional Attributes of the Genus Parapedobacter: A Member of Family Sphingobacteriaceae
Cited by: 5
Author(s): Shekhar Nagar, Chandni Talwar, Shazia Haider, Akshita Puri, Kalaiarasan Ponnusamy, Madhuri Gupta, Utkarsh Sood, Abhay Bajaj, Rup Lal, Roshan Kumar
Software Mentions: 4
Published: over 4 years ago

10.1186/s12864-018-5101-3

Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis
Cited by: 2
Author(s): Natalia Polouliakh, Paul Horton, Kazuhiro Shibanai, Kodai Takata, Vanessa Ludwig, Samik Ghosh, Hiroaki Kitano
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2164-7-38

Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development
Cited by: 31
Author(s): Cristian Becerra, Pere Puigdomènech, Carlos M. Vicient
Software Mentions: 4
Published: almost 19 years ago

10.1002/1878-0261.12376

miR‐372 and miR‐373 enhance the stemness of colorectal cancer cells by repressing differentiation signaling pathways
Cited by: 51
Author(s): Lu‐Qin Wang, Peng Yu, Bin Li, Yanhua Guo, Zirui Liang, Ling‐Ling Zheng, Jianhua Yang, Hui Xu, Shun Liu, Hui Zhou, Liang‐Hu Qu
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-81280-x

Genetic variants of small airways and interstitial pulmonary disease in children
Cited by: 3
Author(s): Mohammed T. Alsamri, Amnah Alabdouli, Alia M. Alkalbani, Durdana Iram, Mohamed Tawil, Priya Antony, Ranjit Vijayan, Abdul‐Kader Souid
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-95916-5

Juvenile social defeat stress exposure favors in later onset of irritable bowel syndrome-like symptoms in male mice
Cited by: 7
Author(s): Kenjiro Matsumoto, Kana Takata, Daisuke Yamada, Haruki Usuda, Koichiro Wada, Tada Maaya, Yoshiyuki Mishima, Shunji Ishihara, Syunji Horie, Akiyoshi Saitoh, Shinichi Kato
Software Mentions: 3
Published: over 3 years ago

10.1038/s41597-019-0124-4

A multimodal dataset of human gait at different walking speeds established on injury-free adult participants
Cited by: 50
Author(s): Céline Schreiber, Florent Moissenet
Software Mentions: 3
Published: over 5 years ago

10.1093/aobpla/plw068

Trait coordination, mechanical behaviour and growth form plasticity of Amborella trichopoda under variation in canopy openness
Cited by: 16
Author(s): Santiago Trueba, Sandrine Isnard, Daniel Barthélémy, Mark E. Olson
Software Mentions: 3
Published: over 9 years ago

10.1093/gbe/evu210

Transcription Factors Bind Negatively Selected Sites within Human mtDNA Genes
Cited by: 46
Author(s): Amit Blumberg, Badi Sri Sailaja, Anshul Kundaje, Liron Levin, Sara Dadon, Shimrit Shmorak, Eitan Shaulian, Eran Meshorer, Dan Mo
Software Mentions: 3
Published: over 10 years ago

10.3389/fnsys.2014.00182

A practical application of text mining to literature on cognitive rehabilitation and enhancement through neurostimulation
Cited by: 9
Author(s): Puiu Balan, Annelies Gerits, Wim Vanduffel
Software Mentions: 3
Published: about 10 years ago

10.3390/molecules23102523

Structural Optimization of Foldamer-Dendrimer Conjugates as Multivalent Agents against the Toxic Effects of Amyloid Beta Oligomers
Cited by: 12
Author(s): Éva Bartus, Gábor Olajos, Ildikó Schuster, Zsolt Bozsó, Mária A. Deli, Szilvia Veszelka, Fruzsina R. Walter, Zsolt Datki, Zsolt Szakonyi, Tamás A. Martinek, Lívia Fülöp
Software Mentions: 3
Published: about 6 years ago

10.3390/molecules25010224

Chelerythrine Chloride Downregulates β-Catenin and Inhibits Stem Cell Properties of Non-Small Cell Lung Carcinoma
Cited by: 27
Author(s): Win Sen Heng, Shiau‐Chuen Cheah
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0064898

Tuberculosis Recurrence after Completion Treatment in a European City: Reinfection or Relapse?
Cited by: 62
Author(s): Joan-Pau Millet, Evelyn Shaw, Àngels Orcau, Martí Casals, José M. Miró, Joan A. Caylà
Software Mentions: 3
Published: over 11 years ago

10.7554/eLife.52189

Distinct inactive conformations of the dopamine D2 and D3 receptors correspond to different extents of inverse agonism
Cited by: 28
Author(s): J. Robert Lane, Ara M. Abramyan, Pramisha Adhikari, Alastair C. Keen, Kuo-Hao Lee, Julie Sanchez, Ravi Kumar Verma, Herman D. Lim, Hideaki Yano, Jonathan A. Javitch, Lei Shi
Software Mentions: 3
Published: almost 5 years ago

10.1155/2016/3686380

Small Incision Lenticule Extraction for Postkeratoplasty Myopia and Astigmatism
Cited by: 5
Author(s): Tamer Massoud, Osama Ibrahim, Kitty Shehata, Moones Abdalla
Software Mentions: 3
Published: almost 9 years ago

10.1016/j.mcn.2014.05.002

The phosphorylation of Hsp20 enhances its association with amyloid-β to increase protection against neuronal cell death
Cited by: 18
Author(s): Ryan T. Cameron, Steven D. Quinn, Lynne S. Cairns, Ruth MacLeod, Ifor D. W. Samuel, Brian O. Smith, J. Carlos Penedo, George S. Baillie
Software Mentions: 3
Published: over 10 years ago

10.1002/advs.201901957

Toward “On‐Demand” Materials Synthesis and Scientific Discovery through Intelligent Robots
Cited by: 38
Author(s): Jiagen Li, Yuxiao Tu, Rulin Liu, Yu Lu, Xi Zhu
Software Mentions: 3
Published: almost 5 years ago

10.1084/jem.20191688

Loss of ZBTB24 impairs nonhomologous end-joining and class-switch recombination in patients with ICF syndrome
Cited by: 22
Author(s): Angela Helfricht, Peter Thijssen, Magdalena B. Rother, Rashmi G. Shah, Likun Du, Shinako Takada, Mélanie Rogier, Jacques Moritz, Hanna IJspeert, Chantal Stoepker, Monique M. van Ostaijen-ten Dam, Vincent Heyer, Martijn S. Luijsterburg, Arjan de Groot, Rianca Jak, Gwendolynn Grootaers, Jun Wang, Pooja Rao, Alfred C.O. Vertegaal, Maarten J.D. van Tol, Qiang Pan‐Hammarström, Bernardo Reina-San-Martín, Girish M. Shah, Mirjam van der Burg, Silvère M. van der Maarel, Haico van Attikum
Software Mentions: 3
Published: over 4 years ago

10.1186/s13045-020-00979-y

Discovery of a dual inhibitor of NQO1 and GSTP1 for treating glioblastoma
Cited by: 28
Author(s): Kecheng Lei, Xiaoxia Gu, Alvaro G. Alvarado, Yuhong Du, Shilin Luo, Eun Hee Ahn, Seong Su Kang, Bing Ji, Xia Liu, Hui Mao, Haian Fu, Harley I. Kornblum, Lingjing Jin, Li Hua, Keqiang Ye
Software Mentions: 3
Published: about 4 years ago

10.1128/mBio.01242-18

Dual Role of a Viral Polymerase in Viral Genome Replication and Particle Self-Assembly
Cited by: 5
Author(s): Xiaoyu Sun, Serban L. Ilca, Juha T. Huiskonen, Minna M. Poranen
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0116205

Hyperspectral Imaging for Mapping of Total Nitrogen Spatial Distribution in Pepper Plant
Cited by: 75
Author(s): Ke Yu, Yanru Zhao, Xiaoli Li, Yimin Shao, Fei Liu, Yong He
Software Mentions: 3
Published: almost 10 years ago

10.3390/s110808164

FPGA-Based Multimodal Embedded Sensor System Integrating Low- and Mid-Level Vision
Cited by: 29
Author(s): Guillermo Botella, Humberto Martı́n, Matilde Santos, Uwe Meyer-Baese
Software Mentions: 3
Published: over 13 years ago

10.1099/ijsem.0.004774

Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
Cited by: 10
Author(s): Xiaoying Li, Jessica L. Sutter, Jacobo de la Cuesta-Zuluaga, Jillian L. Waters, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms20205012

Translesion DNA Synthesis Across Lesions Induced by Oxidative Products of Pyrimidines: An Insight into the Mechanism by Microscale Thermophoresis
Cited by: 4
Author(s): Ondřej Hrabina, Viktor Brabec, Olga Nováková
Software Mentions: 3
Published: about 5 years ago

10.1186/1476-4598-11-15

c-Myb regulates matrix metalloproteinases 1/9, and cathepsin D: implications for matrix-dependent breast cancer cell invasion and metastasis
Cited by: 52
Author(s): Lucia Knopfová, Petr Beneš, Lucie Pekarčíková, Markéta Hermanová, Michal Masařík, Zuzana Pernicová, Karel Souček, Jan Šmarda
Software Mentions: 3
Published: almost 13 years ago

10.1038/s41598-020-80871-4

Hyoid kinematic features for poor swallowing prognosis in patients with post-stroke dysphagia
Cited by: 8
Author(s): Woo Hyung Lee, Min Hyuk Lim, Han Gil Seo, Sung‐Wan Kim
Software Mentions: 3
Published: almost 4 years ago

10.3390/s19051158

On Secure Simple Pairing in Bluetooth Standard v5.0-Part I: Authenticated Link Key Security and Its Home Automation and Entertainment Applications
Cited by: 12
Author(s): Da‐Zhi Sun, Lirong Sun
Software Mentions: 3
Published: almost 6 years ago

10.1128/mSystems.00101-16

From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer
Cited by: 90
Author(s): Aaron Weimann, Kyra Mooren, Jeremy A. Frank, Phillip B. Pope, Andreas Bremges, Alice C. McHardy
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0037459

Genetic and Phenotypic Characterization of a Pseudomonas aeruginosa Population with High Frequency of Genomic Islands
Cited by: 27
Author(s): Rosario Morales-Espinosa, Gloria Soberón‐Chávez, Gabriela Delgado, Luisa Sandner-Miranda, José L. Méndez, Gerardo González-Valencia, Alejandro Cravioto
Software Mentions: 3
Published: over 12 years ago

10.1038/srep21175

Integrated GlycoProteome Analyzer (I-GPA) for Automated Identification and Quantitation of Site-Specific N-Glycosylation
Cited by: 78
Author(s): Gun Wook Park, Jin Young Kim, Heeyoun Hwang, Ju‐Yeon Lee, Y. H. Ahn, Hyun Kyoung Lee, Eun Sun Ji, Kwang Hoe Kim, Hoi Keun Jeong, Ki Na Yun, Yong Sam Kim, Jeong Heon Ko, Hyun Joo An, Jae-Han Kim, Young Ki Paik, Jong Shin Yoo
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12284-017-0177-y

Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs
Cited by: 17
Author(s): Dongliang Yu, Xiaoxia Ma, Ziwei Zuo, Weishan Shao, Huizhong Wang, Yijun Meng
Software Mentions: 3
Published: over 7 years ago

10.1038/srep21958

Maternal Weaning Modulates Emotional Behavior and Regulates the Gut-Brain Axis
Cited by: 26
Author(s): Pamela Farshim, Gemma Walton, Bhismadev Chakrabarti, Ian Givens, Douglas Saddy, Ian Kitchen, Jonathan R. Swann, Alexis Bailey
Software Mentions: 3
Published: almost 9 years ago

10.3390/genes10080564

Investigation of Precise Molecular Mechanistic Action of Tobacco-Associated Carcinogen `NNK´ Induced Carcinogenesis: A System Biology Approach
Cited by: 7
Author(s): Anukriti, Anupam Dhasmana, Swati Uniyal, Pallavi Somvanshi, Uma Bhardwaj, Meenu Gupta, Shafiul Haque, Mohtashim Lohani, Dhruv Kumar, Janne Ruokolainen, Kavindra Kumar Kesari
Software Mentions: 3
Published: over 5 years ago

10.1534/g3.119.400725

Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus: A Small Aquarium Fish Model for Studies on Adaptation to Salinity
Cited by: 21
Author(s): Yusuke Takehana, Margot Zahm, Cédric Cabau, Christophe Klopp, Céline Roques, Olivier Bouchez, Cécile Donnadieu, Célia Barrachina, Laurent Journot, Mari Kawaguchi, Shigeki Yasumasu, Satoshi Ansai, Kiyoshi Naruse, Koji Inoue, Chuya Shinzato, Manfred Schartl, Yann Guiguen, Amaury Herpin
Software Mentions: 3
Published: almost 5 years ago

10.1074/jbc.M115.705863

Inhibition of PRL-2·CNNM3 Protein Complex Formation Decreases Breast Cancer Proliferation and Tumor Growth
Cited by: 38
Author(s): Elie Kostantin, Serge Hardy, William C. Valinsky, Andreas Kompatscher, Jeroen H. F. de Baaij, Yevgen Zolotarov, Mélissa Landry, Noriko Uetani, Luis Alfonso Martínez-Cruz, Joost G. J. Hoenderop, Alvin Shrier, Michel L. Tremblay
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-23368-5

Impedance-based analysis of Natural Killer cell stimulation
Cited by: 19
Author(s): Frank Fasbender, Carsten Watzl
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2020.01534

Molecular Deregulation of EPAS1 in the Pathogenesis of Esophageal Squamous Cell Carcinoma
Cited by: 8
Author(s): Farhadul Islam, Vinod Gopalan, Simon Law, Alfred King-Yin Lam, Suja Pillai
Software Mentions: 3
Published: over 4 years ago

10.1016/j.bbi.2021.05.025

Resolving the cellular specificity of TSPO imaging in a rat model of peripherally-induced neuroinflammation
Cited by: 14
Author(s): Marta Vicente-Rodríguez, Nisha Singh, Federico Turkheimer, Alba Peris-Yague, Karen Randall, Mattia Veronese, Camilla Simmons, Abdul Karim Haji-Dheere, Jayanta Bordoloi, Kerstin Sander, Ramla O. Awais, Erik Årstad, Diana Cash, Christine A. Parker
Software Mentions: 3
Published: over 3 years ago

10.3389/fphar.2019.00445

The NCATS BioPlanet – An Integrated Platform for Exploring the Universe of Cellular Signaling Pathways for Toxicology, Systems Biology, and Chemical Genomics
Cited by: 151
Author(s): Ruili Huang, Ivan Grishagin, Yuhong Wang, Tongan Zhao, Jon Greene, John C. Obenauer, Deborah K. Ngan, Ðắc-Trung Nguyễn, Rajarshi Guha, Ajit Jadhav, Noel Southall, Anton Simeonov, Christopher P. Austin
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.ppat.1008343

Novel role of SARM1 mediated axonal degeneration in the pathogenesis of rabies
Cited by: 34
Author(s): Vinod Sundaramoorthy, Diane Green, Kelly Locke, Carmel O'Brien, Megan Dearnley, John Bingham
Software Mentions: 3
Published: almost 5 years ago

10.1111/jcmm.13370

Gα12 regulates osteoclastogenesis by modulating NFATc1 expression
Cited by: 10
Author(s): Min Kyoung Song, Cheol‐Kyu Park, Yong Deok Lee, Haemin Kim, Min Kyung Kim, Jun-Oh Kwon, Ja Hyun Koo, Min Sung Joo, Sang Geon Kim, Hong-Hee Kim
Software Mentions: 3
Published: about 7 years ago

10.1155/2020/2758640

A Bioinformatics Research on Novel Mechanism of Compound Kushen Injection for Treating Breast Cancer by Network Pharmacology and Molecular Docking Verification
Cited by: 6
Author(s): Shuyu Liu, Xiaohong Hu, Xiaotian Fan, Ruiqi Jin, Wenqian Yang, Yifei Geng, Jiarui Wu
Software Mentions: 3
Published: over 4 years ago

10.1002/brb3.1998

Biomarkers of treatment response in patients with progressive multiple sclerosis treated with high‐dose pharmaceutical‐grade biotin (MD1003)
Cited by: 2
Author(s): Nicolas Collongues, Jens Kuhle, Charidimos Tsagkas, Julien Lamy, Nicolás Meyer, Christian Barro, Katrin Parmar, Michael Amann, Jens Wuerfel, Ludwig Kappos, Thibault Moreau, Jérôme De Sèze
Software Mentions: 3
Published: about 4 years ago

10.3389/fendo.2019.00815

Adiponectin Deficiency Triggers Bone Loss by Up-Regulation of Osteoclastogenesis and Down-Regulation of Osteoblastogenesis
Cited by: 21
Author(s): Jihyun Yang, Ok-Jin Park, Jiseon Kim, Sora Han, Young Yang, Cheol‐Heui Yun
Software Mentions: 3
Published: about 5 years ago

10.1038/s41419-020-03328-6

Autophagy impairment as a key feature for acetaminophen-induced ototoxicity
Cited by: 11
Author(s): Tong Zhao, Tianyu Zheng, Yu Huining, Bo Hu, Baocheng Hu, Peng Ma, Ying Yang, Naidi Yang, Juan Hu, Tong Cao, Gang Chen, Bin Yan, Melina Peshoff, Maria Hatzoglou, Rong Geng, Bo Li, Qing Yin Zheng
Software Mentions: 3
Published: almost 4 years ago

10.3390/children7100149

The Utility of Gait Deviation Index (GDI) and Gait Variability Index (GVI) in Detecting Gait Changes in Spastic Hemiplegic Cerebral Palsy Children Using Ankle–Foot Orthoses (AFO)
Cited by: 5
Author(s): Joanna Majewska, Magdalena Szczepanik, Katarzyna Bazarnik-Mucha, Daniel Szymczyk, Lenart-Domka Ewa
Software Mentions: 3
Published: about 4 years ago

10.1186/s13007-016-0153-3

The plant leaf movement analyzer (PALMA): a simple tool for the analysis of periodic cotyledon and leaf movement in Arabidopsis thaliana
Cited by: 8
Author(s): Wagner Lucas, Christoph Schmal, Dorothee Staiger, Selahattin Danisman
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-020-72903-w

DJ-1 (Park7) affects the gut microbiome, metabolites and the development of innate lymphoid cells (ILCs)
Cited by: 15
Author(s): Yogesh Singh, Christoph Trautwein, Achal Dhariwal, Madhuri S. Salker, Alauddin, Laimdota Zizmare, Lisann Pelzl, Martina Feger, Jakob Admard, Nicolas Casadei, Michael Föller, P. Vivek, David Park, Tak W. Mak, Julia-Stefanie Frick, D. Wallwiener, Sara Brucker, Florian Läng, Olaf Rieß
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2015.00850

Combination of RNAseq and SNP nanofluidic array reveals the center of genetic diversity of cacao pathogen Moniliophthora roreri in the upper Magdalena Valley of Colombia and its clonality
Cited by: 20
Author(s): Shahzad Ali, Jonathan Shao, Mary D. Strem, Wilbert Phillips‐Mora, David Zhang, Lyndel W. Meinhardt, Bryan A. Bailey
Software Mentions: 3
Published: over 9 years ago

10.3390/v13081636

Adeno-Associated Vector-Delivered CRISPR/SaCas9 System Reduces Feline Leukemia Virus Production In Vitro
Cited by: 4
Author(s): A. Katrin Helfer-Hungerbuehler, Jimit Shah, Theres Meili, Eva Boenzli, Pengfei Li, Regina Hofmann‐Lehmann
Software Mentions: 2
Published: over 3 years ago

10.1186/1743-422X-5-124

Molecular characterization and complete genome sequence of avian paramyxovirus type 4 prototype strain duck/Hong Kong/D3/75
Cited by: 48
Author(s): Baibaswata Nayak, Sachin Kumar, Peter L. Collins, Siba K. Samal
Software Mentions: 2
Published: about 16 years ago

10.1186/s13068-018-1094-z

Metabolic engineering of Corynebacterium glutamicum for efficient production of succinate from lignocellulosic hydrolysate
Cited by: 41
Author(s): Yufeng Mao, Guiying Li, Zhishuai Chang, Ran Tao, Zhenzhen Cui, Zhiwen Wang, Ya‐Jie Tang, Tao Chen, Xiao‐Fan Zhao
Software Mentions: 2
Published: over 6 years ago

10.1002/vms3.161

A prospective evaluation of rivaroxaban on haemostatic parameters in apparently healthy dogs
Cited by: 3
Author(s): Liam A. Evans, Colleen Tansey, Melissa Wiebe, Caroline Q. Sloan, Jeffrey E. Patlogar, Sarah Northcutt, Lisa Murphy, Reid K. Nakamura
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13068-018-1057-4

High-level accumulation of oleyl oleate in plant seed oil by abundant supply of oleic acid substrates to efficient wax ester synthesis enzymes
Cited by: 14
Author(s): Dan Yu, Ellen Hornung, Tim Iven, Ivo Feußner
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13024-016-0079-2

Direct α-synuclein promoter transactivation by the tumor suppressor p53
Cited by: 30
Author(s): Eric Duplan, Cécile Giordano, Frédéric Checler, Cristine Alves da Costa
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13024-019-0342-4

Autophagy protein NRBF2 has reduced expression in Alzheimer’s brains and modulates memory and amyloid-beta homeostasis in mice
Cited by: 41
Author(s): Véronik Lachance, Qian Wang, Eric S. Sweet, Insup Choi, Cui Zan Cai, Xu Xu Zhuang, Yuanxi Zhang, Jessica Jiang, Robert D. Blitzer, Ozlem Bozdagi-Gunal, Bin Zhang, Jiahong Lu, Zhenyu Yue
Software Mentions: 2
Published: about 5 years ago

10.1042/BSR20170042

Integrating 3-omics data analyze rat lung tissue of COPD states and medical intervention by delineation of molecular and pathway alterations
Cited by: 12
Author(s): Jiansheng Li, Peng Zhao, Liping Yang, Ya Li, Yange Tian, Suyun Li, Yunping Bai
Software Mentions: 2
Published: over 7 years ago

10.1080/09687680701855405

Targeted disruption ofSlc2a8(GLUT8) reduces motility and mitochondrial potential of spermatozoa
Cited by: 37
Author(s): Verena Gawlik, Stefan Schmidt, Andrea Scheepers, Gunther Wennemuth, Robert Augustin, Gerhard Aumüller, Markus Moser, Hadi Al‐Hasani, Reinhart Kluge, Hans‐Georg Joost, Annette Schürmann
Software Mentions: 2
Published: almost 17 years ago

10.1002/mgg3.1500

Screening of germline mutations in young Rwandan patients with breast cancers
Cited by: 3
Author(s): Jeanne P. Uyisenga, Karin Segers, Aimé Lumaka, Pacifique Mugenzi, Corinne Fasquelle, Bouchra Boujemila, Claire Josse, Léon Mutesa, Vincent Bours
Software Mentions: 2
Published: over 4 years ago

10.3390/biomimetics5040061

Improved Weathering Performance of Poly(Lactic Acid) through Carbon Nanotubes Addition: Thermal, Microstructural, and Nanomechanical Analyses
Cited by: 8
Author(s): Thevu Vu, Peyman Nikaeen, William M. Chirdon, Ahmed Khattab, Dilip Depan
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2164-15-S9-S5

The Yeast Nucleosome Atlas (YNA) database: an integrative gene mining platform for studying chromatin structure and its regulation in yeast
Cited by: 6
Author(s): Po Cheng Hung, Tzu-Hsien Yang, Hungjiun Liaw, Wei Wu
Software Mentions: 2
Published: about 10 years ago

10.3390/molecules22050702

Protective Effect of Caffeic Acid Derivatives on tert-Butyl Hydroperoxide-Induced Oxidative Hepato-Toxicity and Mitochondrial Dysfunction in HepG2 Cells
Cited by: 22
Author(s): Tzung Hsun Tsai, Chun Hsien Yu, Chang Yw, Yu Ting Lin, Chun‐Ying Huang, Yueh‐Hsiung Kuo, Po Jung Tsai
Software Mentions: 2
Published: over 7 years ago

10.1155/2014/456569

Platelet Function Tests: A Review of Progresses in Clinical Application
Cited by: 50
Author(s): Jae-Lim Choi, Shuhua Li, Jin‐Yeong Han
Software Mentions: 2
Published: almost 11 years ago

10.3390/molecules25051229

Sanguinarine Induces Apoptosis in Papillary Thyroid Cancer Cells via Generation of Reactive Oxygen Species
Cited by: 15
Author(s): Abdul Quaiyoom Khan, Elham Abdelmonem Mohamed, Ishrat Hakeem, Aneeza Nazeer, Shilpa Kuttikrishnan, Kirti S. Prabhu, Kodappully Sivaraman Siveen, Zafar Nawaz, Aamir Ahmad, Hatem Zayed, Shahab Uddin
Software Mentions: 2
Published: almost 5 years ago

10.6026/97320630016256

Distinctive features gleaned from the comparative genomes analysis of clinical and non-clinical isolates of Klebsiella pneumoniae
Cited by: 2
Author(s): Jina Rajkumari, Supriyo Chakraborty, Piyush Pandey
Software Mentions: 2
Published: over 4 years ago

10.3390/molecules22101793

The Regulatory Mechanism of MLT/MT1 Signaling on the Growth of Antler Mesenchymal Cells
Cited by: 8
Author(s): Fang Yang, Chao He, Xuyang Sun, Jing Wang, Chunya Luo, Guoshi Liu, Liguo Yang, Junjie Xiong, Lijun Huo
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0181579

β3 integrin expression is required for invadopodia-mediated ECM degradation in lung carcinoma cells
Cited by: 25
Author(s): Rafael Pila Peláez, Xabier Morales, Elizabeth Salvo, Saray Garasa, Carlos Ortiz‐de‐Solórzano, Alfredo Martínez, Ignacio M. Larráyoz, Ana Rouzaut
Software Mentions: 2
Published: over 7 years ago

10.3390/molecules26061612

Phloridzin Acts as an Inhibitor of Protein-Tyrosine Phosphatase MEG2 Relevant to Insulin Resistance
Cited by: 5
Author(s): Sun‐Young Yoon, Jae Sik Yu, Ji Young Hwang, Hae Min So, Seung Beom Seo, Jung Kyu Kim, Tae Su Jang, Sang J. Chung, Ki‐Hyun Kim
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0221463

Hamiltonian energy as an efficient approach to identify the significant key regulators in biological networks
Cited by: 2
Author(s): Shazia Haider, Kalaiarasan Ponnusamy, R. K. Brojen Singh, Anirban Chakraborti, R. Bamezai
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0163913

Regulation of HBEGF by Micro-RNA for Survival of Developing Human Trophoblast Cells
Cited by: 2
Author(s): Chandni Jain, Philip Jessmon, Brian A. Kilburn, Meritxell Jodar, Edward Sendler, Stephen A. Krawetz, D. Randall Armant
Software Mentions: 2
Published: about 8 years ago

10.32598/bcn.9.10.310

Introducing Critical Pain Related Genes: A System Biology Approach
Cited by: 1
Author(s): Mostafa Rezaei Tavirani, Sina Rezaei Tavirani, Mohammad-Mahdi Zadeh-Esmaeel, Nayeb Ali Ahmadi
Software Mentions: 2
Published: about 6 years ago

10.1186/1472-6882-14-135

Evaluation of the diuretic activity of the aqueous and 80% methanol extracts of Ajuga remota Benth (Lamiaceae) leaves in mice
Cited by: 34
Author(s): Wubshet Hailu, Ephrem Engidawork
Software Mentions: 2
Published: over 10 years ago

10.1111/nyas.14479

Allopregnanolone and perampanel as adjuncts to midazolam for treating diisopropylfluorophosphate‐induced status epilepticus in rats
Cited by: 12
Author(s): Ashish Dhir, Donald A. Bruun, Michelle Guignet, Yi Hua Tsai, Eduardo González, Jonas J. Calsbeek, Joan Vu, Naomi Saito, Daniel J. Tancredi, Danielle Harvey, Pamela J. Lein, Michael A. Rogawski
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0072249

IFN-γ-Stimulated Neutrophils Suppress Lymphocyte Proliferation through Expression of PD-L1
Cited by: 154
Author(s): Stan de Kleijn, Jeroen D. Langereis, Jenneke Leentjens, Matthijs Kox, Mihai G. Netea, Leo Koenderman, Gerben Ferwerda, Peter Pickkers, Peter W. M. Hermans
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0076404

Demographic Transition in India: An Evolutionary Interpretation of Population and Health Trends Using ‘Change-Point Analysis’
Cited by: 15
Author(s): Srinivas Goli, Perianayagam Arokiasamy
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0101879

Tubular Overexpression of Gremlin Induces Renal Damage Susceptibility in Mice
Cited by: 33
Author(s): Alejandra Droguett, Paola Krall, M. Eugenia Burgos, Graciela Valderrama, Daniel Carpio, Leopoldo Ardiles, Raquel Rodriguez-Diez, Bredford Kerr, Katherina Walz, Marta Ruíz-Ortega, Jesús Egido, Sergio Mezzano
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0064236

Transcriptome Analysis in Chicken Cecal Epithelia upon Infection by Eimeria tenella In Vivo
Cited by: 29
Author(s): Aijiang Guo, Jianping Cai, Wei Gong, Hong‐Bin Yan, Xuenong Luo, Tian Guang-fu, Shaohua Zhang, Haili Zhang, Guangxi Zhu, Xuepeng Cai
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0122764

15-Deoxy-Δ12,14-Prostaglandin J2 Inhibits Osteolytic Breast Cancer Bone Metastasis and Estrogen Deficiency-Induced Bone Loss
Cited by: 25
Author(s): Ki Rim Kim, Hyun Jeong Kim, Sun Kyoung Lee, Gwang Taek, Kwang Kyun Park, Won Yoon Chung
Software Mentions: 2
Published: over 9 years ago

10.3390/mi10080511

A Novel Bismuth-Chitosan Nanocomposite Sensor for Simultaneous Detection of Pb(II), Cd(II) and Zn(II) in Wastewater
Cited by: 30
Author(s): Jae-Hoon Hwang, Pawan Pathak, Xiaochen Wang, Kelsey L. Rodriguez, Hyoung J. Cho, Woo Hyoung Lee
Software Mentions: 2
Published: over 5 years ago

Projects: cran: analyzer

Papers Mentioning analyzer 230