Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1172/jci.insight.140443

https://doi.org/10.1172/jci.insight.140443

Versatile workflow for cell type–resolved transcriptional and epigenetic profiles from cryopreserved human lung

Cited by: 6
Author(s): Maria Llamazares Prada, Elisa Espinet, Vedrana Mijošek, Uwe Schwartz, Pavlo Lutsik, Raluca Tamas, Mandy Richter, Annika Behrendt, Stephanie Pohl, Naja P. Benz, Thomas Muley, Arne Warth, Claus Peter Heusel, Hauke Winter, Jonathan Landry, Felix J.F. Herth, Tinne Mertens, Harry Karmouty‐Quintana, Ina Koch, Vladimı́r Beneš, Jan O. Korbel, Sebastian M. Waszak, Andreas Trumpp, David Wyatt, Heiko Stahl, Christoph Plass, Renata Z. Jurkowska
Published: over 3 years ago

Software Mentions 9

bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: RnBeads
RnBeads
Papers that mentioned: 145
cran: analyzer
Data Analysis and Automated R Notebook Generation
Papers that mentioned: 230
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: umap
Uniform Manifold Approximation and Projection
Papers that mentioned: 24
pypi: analyzer
python project for finance: realtime data collection, analyze, algorithmic trading
Papers that mentioned: 230
pypi: umap
UNIST synthesis MAP solution
Papers that mentioned: 24