cran: qqman | Projects | Ecosyste.ms: Papers

10.3389/fonc.2021.646267

Exploring MRI Characteristics of Brain Diffuse Midline Gliomas With the H3 K27M Mutation Using Radiomics
Cited by: 13
Author(s): Qian Li, Fei Dong, Biao Jiang, Minming Zhang
Software Mentions: 18
Published: over 3 years ago

10.1534/g3.119.400018

BGData - A Suite of R Packages for Genomic Analysis with Big Data
Cited by: 23
Author(s): Alexander Grueneberg, Gustavo de los Campos
Software Mentions: 16
Published: over 5 years ago

10.1186/s12916-020-01686-8

In utero and childhood exposure to tobacco smoke and multi-layer molecular signatures in children
Cited by: 19
Author(s): Marta Vives-Usano, Carles Hernández-Ferrer, Léa Maitre, Carlos Ruiz‐Arenas, Sandra Andrušaitytė, Eva Borràs, Ángel Carracedo, Maribel Casas, Leda Chatzi, Muireann Coen, Xavier Estivill, Juan R. González, Kristine B. Gützkow, Hector C. Keun, Chung-Ho E Lau, Solène Cadiou, Johanna Lepeule, Dan Mason, Inés Quintela, Oliver Robinson, Eduard Sabidó, Gillian Santorelli, Per E. Schwarze, Alexandros P. Siskos, Rémy Slama, Marina Vafeiadi, Eulàlia Martı́, Martine Vrijheid, Mariona Bustamante
Software Mentions: 14
Published: over 4 years ago

10.7554/eLife.54186

Epigenetic inheritance of circadian period in clonal cells
Cited by: 12
Author(s): Yan Li, Yongli Shan, Gokhul Kilaru, Stefano Berto, Guang-Zhong Wang, Kimberly Cox, Seung-Hee Yoo, Shao Nian Yang, Genevieve Konopka, Joseph S. Takahashi
Software Mentions: 13
Published: over 4 years ago

10.7554/eLife.67784

Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe
Cited by: 26
Author(s): Ella Katz, Jiajie Li, Benjamin Jaegle, Haim Ashkenazy, R. Shawn Abrahams, Clement Bagaza, Samuel Holden, Chris J Pires, Ruthie Angelovici, Daniel J. Kliebenstein
Software Mentions: 13
Published: over 3 years ago

10.1038/s41598-019-41592-5

A Genome-Wide Analysis of the Penumbral Volume in Inbred Mice following Middle Cerebral Artery Occlusion
Cited by: 1
Author(s): Robert F. Rudy, Nareerat Charoenvimolphan, Baogang Qian, Annerose Berndt, Robert M. Friedlander, Scott T. Weiss, Rose Du
Software Mentions: 12
Published: over 5 years ago

10.1371/journal.pgen.1008530

Genetic variation in GC and CYP2R1 affects 25-hydroxyvitamin D concentration and skeletal parameters: A genome-wide association study in 24-month-old Finnish children
Cited by: 12
Author(s): Anders Kämpe, Maria Enlund-Cerullo, Saara Valkama, Elisa Holmlund-Suila, Jenni Rosendahl, Helena Hauta-alus, Minna Pekkinen, Sture Andersson, Outi Mäkitie
Software Mentions: 10
Published: about 5 years ago

10.1007/s00401-020-02224-9

Altered DNA methylation profiles in blood from patients with sporadic Creutzfeldt–Jakob disease
Cited by: 14
Author(s): Luke C. Dabin, Fernando Guntoro, Tracy Campbell, Tony Bélicard, Adam R. Smith, Rebecca G. Smith, Rachel Raybould, Jonathan M. Schott, Katie Lunnon, Peter Sarkies, John Collinge, Simon Mead, Emmanuelle Viré
Software Mentions: 10
Published: over 4 years ago

10.1038/s41416-020-0764-3

A common polymorphism in the retinoic acid pathway modifies adrenocortical carcinoma age-dependent incidence
Cited by: 7
Author(s): Mirvat Surakhy, Marsha D. Wallace, Elisabeth E. Bond, Lukasz F. Grochola, Husein Perez, Matteo Di Giovannantonio, Ping Zhang, David Malkin, Hannah Carter, Ivy Zortéa S Parise, Gerard P. Zambetti, Heloísa Komechen, Mariana M Paraizo, Meghana Pagadala, Emília M. Pinto, Enzo Lalli, Bonald C. Figueiredo, Gareth L. Bond
Software Mentions: 10
Published: almost 5 years ago

10.1038/srep42808

Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data
Cited by: 21
Author(s): Fredrick M. Mobegi, Amelieke J. H. Cremers, Marien I. de Jonge, Stephen D. Bentley, Sacha A. F. T. van Hijum, Aldert Zomer
Software Mentions: 10
Published: almost 8 years ago

10.1186/s13059-020-02141-w

Improved reference genome of the arboviral vector Aedes albopictus
Cited by: 61
Author(s): Umberto Palatini, Reem A. Masri, Luciano V. Cosme, Sergey Koren, Françoise Thibaud‐Nissen, James K. Biedler, Flávia Krsticevic, J. Spencer Johnston, Rebecca Halbach, Jacob E. Crawford, Igor Antoshechkin, Anna‐Bella Failloux, Elisa Pischedda, Michele Marconcini, Jay Ghurye, Arang Rhie, Atashi Sharma, Д. А. Карагодин, James Jenrette, Stephanie Gamez, Pascal Miesen, Patrick Masterson, Adalgisa Caccone, Maria V. Sharakhova, Zhijian Tu, Philippos Aris Papathanos, Ronald P. van Rij, Omar S. Akbari, Jeffrey R. Powell, Adam M. Phillippy, Mariangela Bonizzoni
Software Mentions: 9
Published: over 4 years ago

10.1038/s41598-020-67870-1

Investigating the influence of mtDNA and nuclear encoded mitochondrial variants on high intensity interval training outcomes
Cited by: 6
Author(s): Nicholas R. Harvey, Sarah Voisin, Rodney Arthur Lea, Xu Yan, Miles C. Benton, ID Papadimitriou, Jacques Michaux, Larisa M. Haupt, Kevin J. Ashton, Nir Eynon, Lyn R. Griffiths
Software Mentions: 8
Published: over 4 years ago

10.3389/fpls.2021.693285

SNP Alleles Associated With Low Bolting Tendency in Sugar Beet
Cited by: 5
Author(s): Samathmika Ravi, G. Campagna, Maria Cristina Della Lucia, Chiara Broccanello, Giovanni Bertoldo, Claudia Chiodi, Laura Maretto, Matteo Moro, Azam Sadat Eslami, Subhashini Srinivasan, Andrea Squartini, Giuseppe Concheri, Piergiorgio Stevanato
Software Mentions: 8
Published: over 3 years ago

10.3389/fpls.2018.00796

An Integration of Genome-Wide Association Study and Gene Co-expression Network Analysis Identifies Candidate Genes of Stem Lodging-Related Traits in Brassica napus
Cited by: 23
Author(s): Hongge Li, Xi Cheng, Liping Zhang, Jihong Hu, Fugui Zhang, Biyun Chen, Kun Xu, Guizhen Gao, Hao Li, Lixia Li, Qian Huang, Zaiyun Li, Guiqin Yan, Xiaoming Wu
Software Mentions: 8
Published: over 6 years ago

10.1186/s12870-020-02739-z

Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis
Cited by: 7
Author(s): Massimiliano Trenti, Silvia Lorenzi, P. Bianchedi, Daniele Grossi, O. Failla, M. S. Grando, F. Emanuelli
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pone.0239189

Mining GWAS and eQTL data for CF lung disease modifiers by gene expression imputation
Cited by: 8
Author(s): Hong Dang, Deepika Polineni, Rhonda G. Pace, Jaclyn R. Stonebraker, Harriet Corvol, Garry R. Cutting, Mitchell L. Drumm, Lisa J. Strug, Wanda K. O’Neal, Michael R. Knowles
Software Mentions: 8
Published: about 4 years ago

10.1038/s41597-020-00659-z

lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA
Cited by: 35
Author(s): Fayaz Seifuddin, Komudi Singh, Abhilash Suresh, Jennifer Judy, Yun Ching Chen, Vijender Chaitankar, Ilker Tunc, Xiangbo Ruan, Ping Li, Yi Chen, Haiming Cao, Richard S. Lee, Fernando S. Goes, Peter P. Zandi, M. Saleet Jafri, Mehdi Pirooznia
Software Mentions: 7
Published: about 4 years ago

10.3390/genes11121426

A CNTNAP1 Missense Variant Is Associated with Canine Laryngeal Paralysis and Polyneuropathy
Cited by: 6
Author(s): Anna Letko, Katie M. Minor, Steven G. Friedenberg, G. Diane Shelton, Jill Pesayco Salvador, Paul J. J. Mandigers, P.A.J. Leegwater, Paige A Winkler, Simon M. Petersen‐Jones, Brian Stanley, Kari J. Ekenstedt, Gary S. Johnson, Liz Hansen, Vidhya Jagannathan, James R. Mickelson, Cord Drögemüller
Software Mentions: 7
Published: about 4 years ago

10.3389/fpls.2019.01481

Understanding the Genetic Basis of Spike Fertility to Improve Grain Number, Harvest Index, and Grain Yield in Wheat Under High Temperature Stress Environments
Cited by: 33
Author(s): Sumit Pradhan, Ali Babar, Kelly R. Robbins, Guihua Bai, Richard E. Mason, Jahangir Khan, Dipendra Shahi, Muhsin Avci, Jia Guo, Mohammad Maksud Hossain, Madhav Bhatta, Maryati Mohamed, Senthold Asseng, Paul St. Amand, Salvador A. Gezan, Byung‐Kee Baik, Ann R. Blount, Amy Bernardo
Software Mentions: 7
Published: about 5 years ago

10.1186/s13148-020-00837-1

Differential CpG DNA methylation in peripheral naïve CD4+ T-cells in early rheumatoid arthritis patients
Cited by: 21
Author(s): Rujiraporn Pitaksalee, AN Burska, Shoaib Ajaib, Joshua Hugh Rogers, Rekha Parmar, K. Mydlova, Xuanxiao Xie, Alastair Droop, Jagtar Singh Nijjar, P Chambers, Paul Emery, Richard Hodgett, Iain B. McInnes, Frédérique Ponchel
Software Mentions: 7
Published: over 4 years ago

10.1186/s40478-020-00908-7

Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients
Cited by: 18
Author(s): Rasmus Rydbirk, Jonas Folke, Florence Busato, Elodie Roché, Alisha Shahzad Chauhan, Annemette Løkkegaard, Anne Mette Hejl, Matthias Bode, Morten Blaabjerg, Mette Møller, Erik Hvid Danielsen, Tomasz Brudek, Bente Pakkenberg, Jörg Tost, Susana Aznar
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pbio.2003703

Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation
Cited by: 164
Author(s): Torsten Günther, Helena Malmström, Emma Svensson, Ayça Omrak, Federico Sánchez-Quinto, Gülşah Merve Kılınç, Maja Krzewińska, Gunilla Eriksson, Magdalena Fraser, Hanna Edlund, Arielle R. Munters, Alexandra Coutinho, Luciana G. Simões, Mário Vicente, Anders Sjölander, Berit J. Sellevold, Roger Jørgensen, Peter Claes, Mark D. Shriver, Cristina Valdiosera, Mihai G. Netea, Jan Apel, Kerstin Lidén, Birgitte Skår, Jan Storå, Anders Götherström, Mattias Jakobsson
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-021-87829-0

GWAS analysis reveals distinct pathogenicity profiles of Australian Parastagonospora nodorum isolates and identification of marker-trait-associations to septoria nodorum blotch
Cited by: 7
Author(s): H. Phan, Eiko Furuki, Lukas Hunziker, Kasia Rybak, Kar‐Chun Tan
Software Mentions: 6
Published: over 3 years ago

10.1093/dnares/dsaa032

Whole-genome sequence diversity and association analysis of 198 soybean accessions in mini-core collections
Cited by: 27
Author(s): Hiromi Kajiya‐Kanegae, Hideki Nagasaki, Akito Kaga, Ken Hirano, Eri Ogiso‐Tanaka, Makoto Matsuoka, Motoyuki Ishimori, Masao Ishimoto, Masatsugu Hashiguchi, Hidenori Tanaka, Ryo Akashi, Sachiko Isobe, Hiroyoshi Iwata
Software Mentions: 6
Published: almost 4 years ago

10.1186/s40168-021-01108-8

Human gut-derived B. longum subsp. longum strains protect against aging in a d-galactose-induced aging mouse model
Cited by: 13
Author(s): Yue Xiao, Chao Yang, Leilei Yu, Fengwei Tian, Yarong Wu, Hao Zhang, Ruifu Yang, Colin Hill, Yu‐Jun Cui, Qixiao Zhai
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-87982-6

Association among extracellular superoxide dismutase genotype, plasma concentration, and comorbidity in the very old and centenarians
Cited by: 7
Author(s): Takashi Sasaki, Yukiko Abe, M. Takayama, Tetsuo Adachi, Hideyuki Okano, Nobuyoshi Hirose, Yasumichi Arai
Software Mentions: 6
Published: over 3 years ago

10.1186/s13148-020-00942-1

Serious neonatal morbidities are associated with differences in DNA methylation among very preterm infants
Cited by: 18
Author(s): Todd M. Everson, T. Michael O’Shea, Amber Burt, Karen Hermetz, Brian S. Carter, Jennifer Helderman, Julie A. Hofheimer, Elisabeth C. McGowan, Charles R. Neal, Steven L. Pastyrnak, Lynne M. Smith, Antoine Soliman, Sheri A. DellaGrotta, Lynne M. Dansereau, Jamés F. Padbury, Barry M. Lester, Carmen J. Marsit
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-88501-3

Genome-wide insights on gastrointestinal nematode resistance in autochthonous Tunisian sheep
Cited by: 17
Author(s): Abulgasim Ahbara, Mariem Rouatbi, Mohamed Gharbi, Mourad Rekik, Aynalem Haile, Barbara Rischkowsky, Joram M. Mwacharo
Software Mentions: 6
Published: over 3 years ago

10.1093/jxb/erx018

Genome-wide association study unravels the genetic control of the apple volatilome and its interplay with fruit texture
Cited by: 50
Author(s): Brian Farneti, Mario Di Guardo, Iuliia Khomenko, Luca Cappellin, Franco Biasioli, Riccardo Velasco, Fabrizio Costa
Software Mentions: 6
Published: almost 8 years ago

10.15252/msb.20209684

Genetic regulation of liver lipids in a mouse model of insulin resistance and hepatic steatosis
Cited by: 14
Author(s): Frode Norheim, Karthickeyan Chella Krishnan, Thomas Bjellaas, Laurent Vergnes, Calvin Pan, Brian W. Parks, Yan Meng, Jennifer M. Lang, James A. Ward, Karen Reue, Margarete Mehrabian, Thomas E. Gundersen, Miklós Péterfy, Knut Tomas Dalen, Christian A. Drevon, Simon T. Hui, Aldons J. Lusis, Marcus M. Seldin
Software Mentions: 6
Published: almost 4 years ago

10.3390/plants10061123

Genome-Wide Association Analysis for Stem Cross Section Properties, Height and Heading Date in a Collection of Spanish Durum Wheat Landraces
Cited by: 9
Author(s): Carmen M. Ávila, María Dolores Requena-Ramírez, Cristina Rodríguez-Suárez, Fernando Flores, Josefina C. Sillero, Sergio G. Atienza
Software Mentions: 6
Published: over 3 years ago

10.1038/s42003-021-01908-6

Population genomics and haplotype analysis in spelt and bread wheat identifies a gene regulating glume color
Cited by: 8
Author(s): Michaël Abrouk, Naveenkumar Athiyannan, Thomas Müller, Yveline Pailles, Christoph Stritt, Anne Roulin, Chenggen Chu, Shuyu Liu, Takumi Morita, Hirokazu Handa, Jesse Poland, Beat Keller, Simon G. Krattinger
Software Mentions: 6
Published: almost 4 years ago

10.3389/fgene.2018.00358

Epigenome-Wide Analyses Identify Two Novel Associations With Recurrent Stroke in the Vitamin Intervention for Stroke Prevention Clinical Trial
Cited by: 12
Author(s): Nicole M. Davis Armstrong, Weimin Chen, Michael S. Brewer, Stephen R. Williams, Michèle M. Sale, Bradford B. Worrall, Keith L. Keene
Software Mentions: 6
Published: over 6 years ago

10.1093/icb/icaa138

Epigenetics of Animal Personality: DNA Methylation Cannot Explain the Heritability of Exploratory Behavior in a Songbird
Cited by: 11
Author(s): Kees van Oers, Bernice Sepers, William Sies, Fleur Gawehns, Koen Verhoeven, Veronika N. Laine
Software Mentions: 6
Published: about 4 years ago

10.3390/ani10112009

Genome-Wide Association Studies Reveal Susceptibility Loci for Digital Dermatitis in Holstein Cattle
Cited by: 5
Author(s): Ellen Lai, Alexa L Danner, Thomas R. Famula, Anita M. Oberbauer
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-018-24580-z

Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21
Cited by: 50
Author(s): Quinn T. Ostrom, Ben Kinnersley, Margaret Wrensch, Jeanette E. Eckel‐Passow, Georgina Armstrong, Terri Rice, Yanwen Chen, John K. Wiencke, Lucie McCoy, Helen M. Hansen, Christopher I. Amos, Jonine L. Bernstein, Elizabeth B. Claus, Dora Il’yasova, Christoffer Johansen, Daniel H. Lachance, Rose Lai, Ryan Merrell, Sara H. Olson, Siegal Sadetzki, Joellen M. Schildkraut, Sanjay Shete, Joshua B. Rubin, Justin D. Lathia, Michael E. Berens, Ulrika Andersson, Preetha Rajaraman, Stephen J. Chanock, Martha S. Linet, Zhaoming Wang, Meredith Yeager, Richard S. Houlston, Robert B. Jenkins, Beatrice Melin, Melissa L. Bondy, Jill S. Barnholtz‐Sloan
Software Mentions: 6
Published: over 6 years ago

10.3390/ijms21093384

A Data-Driven Review of the Genetic Factors of Pregnancy Complications
Cited by: 14
Author(s): Yury A. Barbitoff, Alexander Tsarev, Elena S. Vashukova, Evgeniia M Maksiutenko, Л. В. Коваленко, Л. Д. Белоцерковцева, Andrey S. Glotov
Software Mentions: 6
Published: over 4 years ago

10.1186/s13058-019-1098-z

A subgroup of microRNAs defines PTEN-deficient, triple-negative breast cancer patients with poorest prognosis and alterations in RB1, MYC, and Wnt signaling
Cited by: 33
Author(s): Dong‐Yu Wang, Deena M.A. Gendoo, Yaacov Ben‐David, James R. Woodgett, Eldad Zacksenhaus
Software Mentions: 6
Published: almost 6 years ago

10.1111/jfb.14349

Identification of male heterogametic sex‐determining regions on the Atlantic herring <scp>Clupea harengus</scp> genome
Cited by: 5
Author(s): Sunnvør í Kongsstovu, Hans Atli Dahl, Hannes Gislason, Eydna í Homrum, Jan Arge Jacobsen, Paul Flicek, Svein‐Ole Mikalsen
Software Mentions: 5
Published: over 4 years ago

10.3389/fpls.2019.01126

Haplotypes at the Phg-2 Locus Are Determining Pathotype-Specificity of Angular Leaf Spot Resistance in Common Bean
Cited by: 13
Author(s): Michelle M. Nay, Clare Mugisha Mukankusi, Bruno Studer, Bodo Raatz
Software Mentions: 5
Published: over 5 years ago

10.1186/s12885-020-06922-1

Gene networks and expression quantitative trait loci associated with adjuvant chemotherapy response in high-grade serous ovarian cancer
Cited by: 5
Author(s): Jihoon Choi, Danai G. Topouza, Anastasiya Tarnouskaya, Sean Nesdoly, Madhuri Koti, Qing Duan
Software Mentions: 5
Published: over 4 years ago

10.3389/fpls.2020.604938

Multiple Small-Effect Alleles of Indica Origin Enhance High Iron-Associated Stress Tolerance in Rice Under Field Conditions in West Africa
Cited by: 8
Author(s): Giovanni Melandri, Mouritala Sikirou, Juan David Arbelaez, Afeez Shittu, Vimal Kumar Semwal, Kadougoudiou Abdourasmane Konate, A. T. Maji, Steven A. Ngaujah, Inoussa Akintayo, Vishnu Govindaraj, Yuxin Shi, Francisco Agosto-Perez, Anthony J. Greenberg, G. N. Atlin, R. Venuprasad, Susan R. McCouch
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-019-56472-1

Sensitive detection of EBV microRNAs across cancer spectrum reveals association with decreased survival in adult acute myelocytic leukemia
Cited by: 8
Author(s): Mercedeh Movassagh, Cliff I. Oduor, Catherine S. Forconi, Ann M. Moormann, Jeffrey A. Bailey
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0238304

Investigation of gene-gene interactions in cardiac traits and serum fatty acid levels in the LURIC Health Study
Cited by: 5
Author(s): Jiayan Zhou, Kristin Passero, Nicole Palmiero, Bertram Müller‐Myhsok, Marcus E. Kleber, Winfried Maerz, Molly A. Hall
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-75870-4

Genome wide association study of passive immunity and disease traits in beef-suckler and dairy calves on Irish farms
Cited by: 8
Author(s): Dayle Johnston, Robert Mukiibi, Sinéad M. Waters, M. McGee, Carla Surlis, Jennifer C. McClure, Matthew McClure, C.G. Todd, Bernadette Earley
Software Mentions: 5
Published: about 4 years ago

10.1038/s41438-021-00648-2

Chromosome-level genome assemblies of five Prunus species and genome-wide association studies for key agronomic traits in peach
Cited by: 22
Author(s): Qiuping Tan, Sen Li, Yuzheng Zhang, Min Chen, Binbin Wen, Shan Jiang, Xiude Chen, Xiling Fu, Dongmei Li, Wu H, Yong Wang, Wei Xiao, Ling Li
Software Mentions: 5
Published: about 3 years ago

10.1186/s12864-020-06915-1

Deciphering the mode of action and position of genetic variants impacting on egg number in broiler breeders
Cited by: 7
Author(s): Eirini Tarsani, Andreas Kranis, Gerasimos Maniatis, Santiago Avendaño, Ariadne L. Hager-Theodorides, A. Kominakis
Software Mentions: 5
Published: over 4 years ago

10.1186/s12864-020-6558-4

Genome-wide association study (GWAS) reveals genetic loci of lead (Pb) tolerance during seedling establishment in rapeseed (Brassica napus L.)
Cited by: 10
Author(s): Fugui Zhang, Xin Xiao, Kun Xu, Xi Cheng, Ting Xie, Jihong Hu, Xiaoming Wu
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12711-020-00592-0

A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine
Cited by: 22
Author(s): Marta Gòdia, Antônio Reverter, Rayner González-Prendes, Yuliaxis Ramayo-Caldas, Anna Castelló, Joan E. Rodríguez-Gil, Armand Sánchez, Alex Clop
Software Mentions: 5
Published: about 4 years ago

10.1038/s42003-020-0885-5

Multi-level evidence of an allelic hierarchy of USH2A variants in hearing, auditory processing and speech/language outcomes
Cited by: 5
Author(s): Peter A. Perrino, Lidiya Talbot, Rose Kirkland, Amanda Hill, Amanda R. Rendall, Hayley S. Mountford, Jenny C. Taylor, Alexzandrea N Buscarello, Nayana Lahiri, Anand Saggar, R. Holly Fitch, Dianne F. Newbury
Software Mentions: 5
Published: over 4 years ago

10.1534/g3.117.040170

A Chromosome-Scale Assembly of theBactrocera cucurbitaeGenome Provides Insight to the Genetic Basis ofwhite pupae
Cited by: 30
Author(s): Sheina B. Sim, Scott M. Geib
Software Mentions: 5
Published: over 7 years ago

10.1002/1878-0261.12799

Genetic factors associated with cancer racial disparity – an integrative study across twenty‐one cancer types
Cited by: 7
Author(s): Li Yan, Xiaodong Pang, Zihan Cui, Yidong Zhou, Feng Mao, Lin Yang, Xiaohui Zhang, Songjie Shen, Peixin Zhu, Tingting Zhao, Qiang Sun, Jinfeng Zhang
Software Mentions: 5
Published: about 4 years ago

10.1186/s12864-021-07755-3

Identification of candidate genomic regions for chicken egg number traits based on genome-wide association study
Cited by: 10
Author(s): Xiurong Zhao, Changsheng Nie, Jinxin Zhang, Xinghua Li, Tao Zhu, Zi Guan, Yu Chen, Liang Wang, Xue Ze Lv, Weijia Yang, Yaxiong Jia, Zhonghua Ning, Haiying Li, Changqing Qu, Huie Wang, Lujiang Qu
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0171710

Mapping the sensory perception of apple using descriptive sensory evaluation in a genome wide association study
Cited by: 46
Author(s): Beatrice Amyotte, Amy Bowen, Travis Banks, Istvan Rajcan, Daryl J. Somers
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0174461

Abnormal expression of mRNA, microRNA alteration and aberrant DNA methylation patterns in rectal adenocarcinoma
Cited by: 21
Author(s): Hua Yang, Xiukun Ma, Xianglong Liu, Xia Yuan, Hai Qin, Xipeng Zhang
Software Mentions: 5
Published: over 7 years ago

10.1186/s12864-015-1945-y

Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens
Cited by: 34
Author(s): Guoqiang Yi, Manman Shen, Jiahui Yuan, Chang Sun, Zhongyi Duan, Liang Qu, Taocun Dou, Meng Ma, Jian Lü, Jun Guo, Sirui Chen, Lujiang Qu, Kehua Wang, Ning Yang
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pgen.1008123

Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass
Cited by: 19
Author(s): Larry D. Mesner, Gina M. Calabrese, Basel M. Al‐Barghouthi, Daniel M. Gatti, John P. Sundberg, Gary A. Churchill, Dana A. Godfrey, Cheryl Ackert‐Bicknell, Charles R. Farber
Software Mentions: 5
Published: over 5 years ago

10.1007/s00122-020-03666-1

Sequenced-based paternity analysis to improve breeding and identify self-incompatibility loci in intermediate wheatgrass (Thinopyrum intermedium)
Cited by: 11
Author(s): Jared Crain, Steve Larson, Kevin M. Dorn, Traci Hagedorn, Lee R. DeHaan, Jesse Poland
Software Mentions: 4
Published: over 4 years ago

10.1186/s12864-020-07198-2

GWAS unveils features between early- and late-flowering pearl millets
Cited by: 10
Author(s): Oumar Diack, Ghislain Kanfany, Mame Codou Guèye, Ousmane Sy, Amadou Fofana, Hamidou Tall, Desalegn D. Serba, Leïla Zekraoui, Cécile Berthouly‐Salazar, Yves Vigouroux, Diaga Diouf, Ndjido Ardo Kane
Software Mentions: 4
Published: about 4 years ago

10.1186/s13068-020-01774-0

Integrating GWAS, linkage mapping and gene expression analyses reveals the genetic control of growth period traits in rapeseed (Brassica napus L.)
Cited by: 17
Author(s): Tengyue Wang, Lijuan Wei, Jia Wang, Ling Xie, Yang Yang Li, Shuyao Ran, Lanyang Ren, Kun Lu, Jiana Li, Michael P. Timko, Liezhao Liu
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-021-92455-x

Genome-wide association analyses identify genotype-by-environment interactions of growth traits in Simmental cattle
Cited by: 14
Author(s): Camila Urbano Braz, Troy N. Rowan, Robert D. Schnabel, Jared E. Decker
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-020-06926-y

Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data
Cited by: 17
Author(s): Ewelina Pośpiech, Magdalena Kukla-Bartoszek, Joanna Karłowska-Pik, Piotr Zieliński, Anna Woźniak, Michał Boroń, Michał Dąbrowski, Magdalena Zubańska, Agata Jarosz, Tomasz Grzybowski, Rafał Płoski, Magdalena Spólnicka, Wojciech Branicki
Software Mentions: 4
Published: over 4 years ago

10.3389/fpls.2019.00811

Identification of Loci and Candidate Genes Responsible for Pod Dehiscence in Soybean via Genome-Wide Association Analysis Across Multiple Environments
Cited by: 25
Author(s): Dezhou Hu, Guizhen Kan, Wei Hu, Yali Li, Dejun Hao, Li Xiao, Hui Yang, Zhongyi Yang, Xiaohong He, Fang Huang, Deyue Yu
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-017-3931-z

Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)
Cited by: 15
Author(s): Irina Ćalić, Jennifer Koch, David W. Carey, Charles Addo‐Quaye, John E. Carlson, David B. Neale
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2020.563187

Genome Wide Association Studies in Multiple Spinach Breeding Populations Refine Downy Mildew Race 13 Resistance Genes
Cited by: 21
Author(s): Gehendra Bhattarai, Ainong Shi, Chunda Feng, Braham Dhillon, Beiquan Mou, James C. Correll
Software Mentions: 4
Published: about 4 years ago

10.1186/s12870-020-02611-0

Genome-wide association study reveals the genetic basis of fiber quality traits in upland cotton (Gossypium hirsutum L.)
Cited by: 18
Author(s): Wei Liu, Chengxiang Song, Zhongying Ren, Zhiqiang Zhang, Xinwu Pei, Yangai Liu, Kunlun He, Fei Zhang, Junjie Zhao, Jie Zhang, Xingxing Wang, Daigang Yang, Wei Li
Software Mentions: 4
Published: over 4 years ago

10.1038/srep28836

Genetic architecture dissection by genome-wide association analysis reveals avian eggshell ultrastructure traits
Cited by: 11
Author(s): Zhongyi Duan, Chang Sun, Manman Shen, Kehua Wang, Ning Yang, Jiangxia Zheng, Guiyun Xu
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0203508

Origins and geographic diversification of African rice (Oryza glaberrima)
Cited by: 17
Author(s): Margaretha A. Veltman, Jonathan M. Flowers, Tinde van Andel, M. Eric Schranz
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0167715

Cultivar-Based Introgression Mapping Reveals Wild Species-Derived Pm-0, the Major Powdery Mildew Resistance Locus in Squash
Cited by: 26
Author(s): William L. Holdsworth, Kyle E. LaPlant, Duane C. Bell, Molly M. Jahn, Michael Mazourek
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-017-06214-y

Genotype-environment interaction on human cognitive function conditioned on the status of breastfeeding and maternal smoking around birth
Cited by: 9
Author(s): Sang Lee, W. M. Shalanee P. Weerasinghe, J. H. J. van der Werf
Software Mentions: 4
Published: over 7 years ago

10.1093/gigascience/giy049

Population genomic data reveal genes related to important traits of quail
Cited by: 23
Author(s): Yan Wu, Yaolei Zhang, Zhuocheng Hou, Guangyi Fan, Jinsong Pi, Shuai Sun, Chen Jiang, Huaqiao Liu, Xiao Du, Jie Shen, Gang Hu, Wenbin Chen, Angelo Pan, Yin PingPing, Xiaoli Chen, Yuejin Pu, Zhonghu He, Zhen-Hua Liang, Jianbo Jian, Hao Zhang, Bin Wu, Jing Sun, Jianwei Chen, Hu Tao, Ting Yang, Hong‐Wei Xiao, Huan Yang, Chuanwei Zheng, Mingzhou Bai, Xiaodong Fang, David W. Burt, Wen Wang, Qingyi Li, Xun Xu, Chengfeng Li, Huanming Yang, Jian Wang, Ning Yang, Xin Liu, Junzheng Du
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-020-07322-2

Environmental RNAi pathways in the two-spotted spider mite
Cited by: 10
Author(s): Mosharrof Mondal, Jacob Peter, Obrie Scarbrough, Alex S. Flynt
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41438-019-0214-7

Minor alleles are associated with white rust (Albugo occidentalis) susceptibility in spinach (Spinacia oleracea)
Cited by: 4
Author(s): Henry O. Awika, Thiago G. Marconi, Renesh Bedre, Kranthi K. Mandadi, Carlos A. Avila
Software Mentions: 4
Published: about 5 years ago

10.5194/aab-62-113-2019

Identification of potential genomic regions and candidate genes for egg albumen quality by a genome-wide association study
Cited by: 9
Author(s): Liang Qu, Manman Shen, Jun Guo, Xingguo Wang, Taocun Dou, Yuping Hu, Yongfeng Li, Meng Ma, Kehua Wang, Honglin Liu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008805

Genetic analysis of osteoblast activity identifies Zbtb40 as a regulator of osteoblast activity and bone mass
Cited by: 11
Author(s): Madison L. Doolittle, Gina M. Calabrese, Larry D. Mesner, Dana A. Godfrey, Robert Maynard, Cheryl Ackert‐Bicknell, Charles R. Farber
Software Mentions: 4
Published: over 4 years ago

10.1186/s12864-019-5605-5

Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens
Cited by: 20
Author(s): Andrei A. Kudinov, Natalia V. Dementieva, О.В. Митрофанова, Olga I. Stanishevskaya, Е.С. Федорова, Tatiana A. Larkina, Arina I Mishina, Kirill Plemyashov, Darren K. Griffin, Michael N Romanov
Software Mentions: 4
Published: over 5 years ago

10.1186/s12711-020-00581-3

Genomic diversity and population structure of the Leonberger dog breed
Cited by: 8
Author(s): Anna Letko, Katie M. Minor, Vidhya Jagannathan, Franz R. Seefried, James R. Mickelson, P.A. Oliehoek, Cord Drögemüller
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pgen.1008104

A meta-analysis of genome-wide association studies of epigenetic age acceleration
Cited by: 77
Author(s): Jude Gibson, Tom C. Russ, Toni‐Kim Clarke, David M. Howard, Robert F. Hillary, Kathryn Evans, Richard M Martin, Mairead Lesley Bermingham, Stewart W. Morris, Archie Campbell, Caroline Hayward, Alison Murray, David J. Porteous, Steve Horvath, Ake T. Lu, Andrew M. McIntosh, Heather C. Whalley, Riccardo E. Marioni
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-021-07788-8

High resolution mapping and candidate gene identification of downy mildew race 16 resistance in spinach
Cited by: 12
Author(s): Gehendra Bhattarai, Wei Yang, Ainong Shi, Chunda Feng, Braham Dhillon, James C. Correll, Beiquan Mou
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2020.00091

Genome-Wide Identification and Characterization of DNA Methylation and Long Non-Coding RNA Expression in Gastric Cancer
Cited by: 14
Author(s): Peng Song, Lei Wu, Wenxian Guan
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41431-021-00854-5

Regional heritability mapping identifies several novel loci (STAT4, ULK4, and KCNH5) for primary biliary cholangitis in the Japanese population
Cited by: 6
Author(s): Olivier Gervais, Kazuko Ueno, Yosuke Kawai, Yuki Hitomi, Yoshihiro Aiba, Mayumi Ueta, Minoru Nakamura, Katsushi Tokunaga, Masao Nagasaki
Software Mentions: 4
Published: over 3 years ago

10.1186/s12711-020-00553-7

Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources to different breeding and production systems
Cited by: 38
Author(s): Samuele Bovo, Anisa Ribani, María Muñoz, E. Alves, J. P. Araújo, Rıccardo Bozzi, Marjeta Čandek-Potokar, Rui Charneca, Federica Di Palma, Graham Etherington, Ana Fernández, Fabián García, Juan García‐Casco, Danijel Karolyi, M. Gallo, Vladimir Margeta, J.M. Martins, Marie J. Mercat, Giulia Moscatelli, Yolanda Núñez, Raquel Quintanilla, Čedomir Radović, Violeta Razmaitė, Juliette Riquet, Radomir Savić, Giuseppina Schiavo, G. Usai, Valerio Joe Utzeri, Christoph Zimmer, Cristina Óvilo, Luca Fontanesi
Software Mentions: 4
Published: over 4 years ago

10.3390/plants10081572

Genome-Environment Association Analysis for Bio-Climatic Variables in Common Bean (Phaseolus vulgaris L.) from Brazil
Cited by: 3
Author(s): Júlio César Ferreira Elias, Maria Celeste Gonçalves‐Vidigal, Andrea Ariani, Giseli Valentini, Maria da Conceição Martiniano-Souza, Mariana Vaz Bisneta, Paul Gepts
Software Mentions: 4
Published: over 3 years ago

10.1186/s13148-021-01102-9

Blood DNA methylation and COVID-19 outcomes
Cited by: 61
Author(s): Joseph Balnis, Andy Madrid, Kirk Hogan, Lisa A. Drake, Hau Chieng, Anupama Tiwari, Vincent Colot, Amit Chopra, Peter Vincent, Michael D. Robek, Harold A. Singer, Reid S. Alisch, Ariel Jaitovich
Software Mentions: 4
Published: over 3 years ago

10.1186/s13148-021-01004-w

Profile of copper-associated DNA methylation and its association with incident acute coronary syndrome
Cited by: 15
Author(s): Pinpin Long, Qiuhong Wang, Yizhi Zhang, Xiaoyan Zhu, Kuai Yu, Haijing Jiang, Xuezhen Liu, Min Zhou, Yu Yuan, Kang Liu, Jing Jiang, Xiaomin Zhang, Meian He, Huan Guo, Weihong Chen, Jing Yuan, Long Cheng, Liming Liang, Tangchun Wu
Software Mentions: 4
Published: almost 4 years ago

10.1534/g3.120.401479

Genomic Patterns of Introgression in Interspecific Populations Created by Crossing Wheat with Its Wild Relative
Cited by: 12
Author(s): Moses Nyine, Elina Adhikari, Marshall Clinesmith, Katherine Jordan, Allan K. Fritz, Eduard Akhunov
Software Mentions: 4
Published: about 4 years ago

10.3390/cells10061291

Innate and Adaptive Immune Genes Associated with MERS-CoV Infection in Dromedaries
Cited by: 6
Author(s): Sara Lado, Jean P. Elbers, Martin Plášil, Tom Loney, Pia Weidinger, Jeremy V. Camp, Jolanta Kolodziejek, Ján Futas, Dafalla A. Kannan, Pablo Orozco‐terWengel, Petr Hořín, Norbert Nowotny, Pamela A. Burger
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009770

The genetics and evolution of eye color in domestic pigeons (Columba livia)
Cited by: 5
Author(s): Si Si, Xiao Xu, Yan Zhuang, Xiao‐Dong Gao, Honghai Zhang, Zhengting Zou, Shu‐Jin Luo
Software Mentions: 4
Published: over 3 years ago

10.3390/genes9110518

Genetic Diversity, Population Structure, and Linkage Disequilibrium in a Spanish Common Bean Diversity Panel Revealed through Genotyping-by-Sequencing
Cited by: 29
Author(s): Ana Čampa, Ester Murube, Juan José Ferreira Fernández
Software Mentions: 4
Published: about 6 years ago

10.3390/genes11010082

Genome-Wide Association Study and Subsequent Exclusion of ATCAY as a Candidate Gene Involved in Equine Neuroaxonal Dystrophy Using Two Animal Models
Cited by: 3
Author(s): Erin N. Hales, Christina Esparza, Sichong Peng, Anna R. Dahlgren, Janel Peterson, Andrew D. Miller, Carrie J. Finno
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0225834

Discovery of genomic variations by whole-genome resequencing of the North American Araucana chicken
Cited by: 5
Author(s): Rooksana E. Noorai, Vijay Shankar, Nowlan H. Freese, Christopher M. Gregorski, Steve Chapman
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.00217

Genomic, Transcriptomic, and Epigenomic Features Differentiate Genes That Are Relevant for Muscular Polyunsaturated Fatty Acids in the Common Carp
Cited by: 18
Author(s): Hanyuan Zhang, Peng Xu, Yanliang Jiang, Zixia Zhao, Jianxin Feng, Ruyu Tai, Chuanju Dong, Jian Xu
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes11070775

Evolutionary History of the Risk of SNPs for Diffuse-Type Gastric Cancer in the Japanese Population
Cited by: 2
Author(s): Risa L. Iwasaki, Koji Ishiya, Hideaki Kanzawa-Kiriyama, Yosuke Kawai, Jun Gojobori, Yoko Satta
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2020.00243

New Insights From Imputed Whole-Genome Sequence-Based Genome-Wide Association Analysis and Transcriptome Analysis: The Genetic Mechanisms Underlying Residual Feed Intake in Chickens
Cited by: 10
Author(s): Shaopan Ye, Zitao Chen, Rongrong Zheng, Shuqi Diao, Jinyan Teng, Xiaolong Yuan, Hao Zhang, Zanmou Chen, Xiquan Zhang, Jiaqi Li, Zhe Zhang
Software Mentions: 4
Published: over 4 years ago

10.1099/mgen.0.000581

Mining genome traits that determine the different gut colonization potential of Lactobacillus and Bifidobacterium species
Cited by: 13
Author(s): Yue Xiao, Jianxin Zhao, Hao Zhang, Qixiao Zhai
Software Mentions: 4
Published: over 3 years ago

10.1186/s12863-018-0643-6

Modification effect of fenofibrate therapy, a longitudinal epigenomic-wide methylation study of triglycerides levels in the GOLDN study
Cited by: 3
Author(s): Runmin Wei, Yanyan Wu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0200785

Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture
Cited by: 125
Author(s): Stuart K. Kim
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0189955

A genome-wide study to identify genes responsible for oviduct development in chickens
Cited by: 9
Author(s): Manman Shen, Liang Qu, Meng Ma, Taocun Dou, Jian Lü, Jun Guo, Yuping Hu, Xingguo Wang, Yongfeng Li, Kehua Wang, Ning Yang
Software Mentions: 4
Published: almost 7 years ago

10.3389/fpls.2017.01463

Climate Clever Clovers: New Paradigm to Reduce the Environmental Footprint of Ruminants by Breeding Low Methanogenic Forages Utilizing Haplotype Variation
Cited by: 11
Author(s): Parwinder Kaur, R. Appels, Philipp E. Bayer, Gabriel Keeble‐Gagnère, Jiankang Wang, Hideki Hirakawa, Kenta Shirasawa, Phil Vercoe, Katia Stefanova, Zoey Durmic, Phillip Nichols, Clinton Revell, Sachiko Isobe, David Edwards, William Erskine
Software Mentions: 4
Published: over 7 years ago

10.3390/genes11080838

Insights into the Genetic Architecture of Bran Friability and Water Retention Capacity, Two Important Traits for Whole Grain End-Use Quality in Winter Wheat
Cited by: 3
Author(s): Sviatoslav Navrotskyi, Vikas Belamkar, P. S. Baenziger, Devin J. Rose
Software Mentions: 4
Published: over 4 years ago

Projects: cran: qqman

Papers Mentioning qqman 273