Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.54186

https://doi.org/10.7554/eLife.54186

Epigenetic inheritance of circadian period in clonal cells

Cited by: 12
Author(s): Yan Li, Yongli Shan, Gokhul Kilaru, Stefano Berto, Guang-Zhong Wang, Kimberly Cox, Seung-Hee Yoo, Shao Nian Yang, Genevieve Konopka, Joseph S. Takahashi
Published: over 4 years ago

Software Mentions 13

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: methylKit
DNA methylation analysis from high-throughput bisulfite sequencing results
Papers that mentioned: 154
cran: BioVenn
Create Area-Proportional Venn Diagrams from Biological Lists
Papers that mentioned: 247
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: qqman
Q-Q and Manhattan Plots for GWAS Data
Papers that mentioned: 273
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
pypi: BioVenn
BioVenn: Create Area-Proportional Venn Diagrams from Biological Lists
Papers that mentioned: 247
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: qqman
Draws Manhattan plot and QQ plot using plink assoc output.
Papers that mentioned: 273
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017