Ecosyste.ms: Papers

10.7554/eLife.65905

Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
Cited by: 28
Author(s): Sumiko Takao, Lauren Forbes, Masahiro Uni, Shu‐Yuan Cheng, Jose Mario Bello Pineda, Yusuke Tarumoto, Paolo Cifani, Gerard Minuesa, Celine Chen, Michael G. Kharas, Robert K. Bradley, Christopher R. Vakoc, Richard P. Koche, Alex Kentsis
Software Mentions: 9
Published: almost 4 years ago

10.1186/s13012-018-0715-z

Proceedings of the 4th Biennial Conference of the Society for Implementation Research Collaboration (SIRC) 2017: implementation mechanisms: what makes implementation work and why? part 2
Cited by: 1
Author(s): Bryan Garner, David Kaiser, Michael Bradshaw, Elizabeth Ball, Alyssa Katherine Toro, James H. Ford, Mark Zehner, Heather J. Gotham, Traci Rieckmann, Michael Chaple, Kate Speck, Denna Vandersloot, Mat Roosa, Steve Martino
Software Mentions: 7
Published: almost 7 years ago

10.3389/fmicb.2018.02364

Accounting for Bacterial Overlap Between Raw Water Communities and Contaminating Sources Improves the Accuracy of Signature-Based Microbial Source Tracking
Cited by: 16
Author(s): Moa Hägglund, Stina Bäckman, Anna Macellaro, Petter Lindgren, Emmy Borgmästars, Karin Jacobsson, Rikard Dryselius, Per Stenberg, Andreas Sjödin, Mats Forsman, Jon Ahlinder
Software Mentions: 6
Published: about 6 years ago

10.1111/ele.13082

Linking phytoplankton community metabolism to the individual size distribution
Cited by: 20
Author(s): Daniel Padfield, Angus Buckling, Ruth Warfield, Chris D. Lowe, Gabriel Yvon‐Durocher
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2021.681206

LISA2: Learning Complex Single-Cell Trajectory and Expression Trends
Cited by: 1
Author(s): Yang Chen, Yuping Zhang, Kairong Li, Zhengqing Ouyang
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pbio.3000214

Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana
Cited by: 31
Author(s): François Vasseur, Louise Fouqueau, Dominique de Vienne, Thibault Nidelet, Cyrille Violle, Detlef Weigel
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-52537-3

Structural characterization of the RH1-LZI tandem of JIP3/4 highlights RH1 domains as a cytoskeletal motor-binding motif
Cited by: 19
Author(s): Fernando Vilela, Christophe Velours, Mélanie Chenon, Magali Aumont-Niçaise, Valérie Campanacci, Aurélien Thureau, Olena Pylypenko, Jessica Andréani, P. Llinas, J. Menetrey
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0058241

Allometric Convergence in Savanna Trees and Implications for the Use of Plant Scaling Models in Variable Ecosystems
Cited by: 20
Author(s): Andrew T. Tredennick, Lisa Patrick Bentley, Niall P. Hanan
Software Mentions: 4
Published: over 11 years ago

10.15252/embj.2019102926

Structural basis of semaphorin‐plexin <i>cis</i> interaction
Cited by: 15
Author(s): Daniel Rozbeský, Marieke G. Verhagen, Dimple Karia, Gergely Nagy, Luis Álvarez, R.A. Robinson, K. Harlos, Sergi Padilla‐Parra, R. Jeroen Pasterkamp, Emma Jones
Software Mentions: 4
Published: over 4 years ago

10.3390/v7031454

Interaction Research on the Antiviral Molecule Dufulin Targeting on Southern Rice Black Streaked Dwarf Virus P9-1 Nonstructural Protein
Cited by: 23
Author(s): Zhenchao Wang, Xiangyang Li, Wenli Wang, Weiying Zhang, Yu Lu, Deyu Hu, Baoan Song
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2021.677728

Ultra-High-Density QTL Marker Mapping for Seedling Photomorphogenesis Mediating Arabidopsis Establishment in Southern Patagonia
Cited by: 2
Author(s): Daniel Matsusaka, Daniele Filiault, Diego H. Sánchez, Javier Francisco Botto
Software Mentions: 3
Published: over 3 years ago

10.1186/s12879-017-2940-5

Molecular epidemiology of Neisseria gonorrhoeae strains circulating in Indonesia using multi-locus variable number tandem repeat analysis (MLVA) and Neisseria gonorrhoeae multi-antigen sequence typing (NG-MAST) techniques
Cited by: 1
Author(s): I Putu Yuda Hananta, Alje P. van Dam, Maarten F. Schim van der Loeff, Mirjam Dierdorp, Carolien M. Wind, Hardyanto Soebono, Henry J. C. de Vries, Sylvia M. Bruisten
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.ppat.1005660

Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells
Cited by: 30
Author(s): Laura Berneking, Marie Schnapp, Rumm Andreas, Claudia Trasak, Klaus Ruckdeschel, Malik Alawi, Adam Grundhoff, Alexey Kikhney, Friedrich Koch-Nolte, Friedrich Buck, Markus Perbandt, Christian Betzel, Dmitri I. Svergun, Moritz Hentschke, Martin Aepfelbacher
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms20205012

Translesion DNA Synthesis Across Lesions Induced by Oxidative Products of Pyrimidines: An Insight into the Mechanism by Microscale Thermophoresis
Cited by: 4
Author(s): Ondřej Hrabina, Viktor Brabec, Olga Nováková
Software Mentions: 3
Published: about 5 years ago

10.3390/e22111274

Minimum Spanning vs. Principal Trees for Structured Approximations of Multi-Dimensional Datasets
Cited by: 3
Author(s): Alexander Chervov, Jonathan Bac, Andreï Zinovyev
Software Mentions: 3
Published: about 4 years ago

10.1016/j.jbc.2021.100295

The cytoprotective protein MANF promotes neuronal survival independently from its role as a GRP78 cofactor
Cited by: 27
Author(s): Ave Eesmaa, Li-Ying Yu, Helka Göös, Kristofer Nõges, Vera Kovaleva, Maarit Hellman, Richard Zimmermann, Martin Jung, Perttu Permi, Markku Varjosalo, Päivi Lindholm, Märt Saarma
Software Mentions: 3
Published: almost 4 years ago

10.3389/fninf.2020.00009

A Smart Region-Growing Algorithm for Single-Neuron Segmentation From Confocal and 2-Photon Datasets
Cited by: 12
Author(s): Alejandro Luis Callara, Chiara Magliaro, Arti Ahluwalia, Nicola Vanello
Software Mentions: 3
Published: over 4 years ago

10.1038/s41398-017-0054-x

Cerebral organoids reveal early cortical maldevelopment in schizophrenia—computational anatomy and genomics, role of FGFR1
Cited by: 123
Author(s): Ewa K. Stachowiak, Courtney A. Benson, Sridhar T. Narla, Alexander Dimitri, L. E. Bayona Chuye, Siddhartha Dhiman, K. Harikrishnan, Seerat Elahi, David A. Freedman, Kristen J. Brennand, Pinaki Sarder, Michal K. Stachowiak
Software Mentions: 3
Published: about 7 years ago

10.1002/2211-5463.12897

A digital mRNA expression signature to classify challenging Spitzoid melanocytic neoplasms
Cited by: 1
Author(s): Lisa M. Hillen, Milan S. Geybels, Ivelina Spassova, Juergen C. Becker, Thilo Gambichler, Marjan Garmyn, Axel zur Hausen, Joost van den Oord, Véronique Winnepenninckx
Software Mentions: 3
Published: over 4 years ago

10.15252/embj.2019102246

Outer membrane lipoprotein NlpI scaffolds peptidoglycan hydrolases within multi‐enzyme complexes in <i>Escherichia coli</i>
Cited by: 61
Author(s): Manuel Banzhaf, Hamish C. L. Yau, Jolanda Verheul, Adam Lodge, George Kritikos, André Mateus, Baptiste Cordier, Ann Kristin Hov, Frank Stein, Morgane Wartel, Manuel Pazos, Alexandra S Solovyova, Eefjan Breukink, Sven van Teeffelen, Mikhail M. Savitski, Tanneke den Blaauwen, Athanasios Typas, Waldemar Vollmer
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0242552

Development and evaluation of a novel music-based therapeutic device for upper extremity movement training: A pre-clinical, single-arm trial
Cited by: 6
Author(s): Nina Schaffert, Thenille Braun Janzen, Roy Ploigt, Sebastian Schlüter, Veronica Vuong, Michael H. Thaut
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-017-1597-9

M-AMST: an automatic 3D neuron tracing method based on mean shift and adapted minimum spanning tree
Cited by: 8
Author(s): Wan Zhang, Yishan He, Ming Hao, Jian Yang, Ning Zhong
Software Mentions: 3
Published: over 7 years ago

10.3390/biom9120861

Evaluating Iso-Mukaadial Acetate and Ursolic Acid Acetate as Plasmodium falciparum Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase Inhibitors
Cited by: 10
Author(s): Francis Opoku, Penny Poomani Govender, Ofentse Jacob Pooe, Mthokozisi B. C. Simelane
Software Mentions: 2
Published: almost 5 years ago

10.3390/ph11030067

Looking for Novel Capsid Protein Multimerization Inhibitors of Feline Immunodeficiency Virus
Cited by: 7
Author(s): Natalia Sierra, Christelle Folio, Xavier Robert, Mathieu Long, Christophe Guillon, Guzmán Álvarez
Software Mentions: 2
Published: over 6 years ago

10.1038/srep10794

A Biologically Inspired Network Design Model
Cited by: 23
Author(s): Xiaoge Zhang, Andrew Adamatzky, Felix T.S. Chan, Yong Deng, Hai Yang, Xin Yang, Michail‐Antisthenis Tsompanas, Georgios Ch. Sirakoulis, Sankaran Mahadevan
Software Mentions: 2
Published: over 9 years ago

10.1186/s12888-016-0949-8

The cost-effectiveness of family/family-based therapy for treatment of externalizing disorders, substance use disorders and delinquency: a systematic review
Cited by: 11
Author(s): Maartje Goorden, Saskia Schawo, Clazien Bouwmans-Frijters, E. van der Schee, Vincent M. Hendriks, Leona Hakkaart-van Roijen
Software Mentions: 2
Published: over 8 years ago

10.1016/j.str.2018.01.005

Multispecific Substrate Recognition in a Proton-Dependent Oligopeptide Transporter
Cited by: 46
Author(s): Maria Martinez Molledo, E.M. Quistgaard, Ali Flayhan, Joanna Pieprzyk, Christian Löw
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0178875

The monoclonal S9.6 antibody exhibits highly variable binding affinities towards different R-loop sequences
Cited by: 51
Author(s): Fabian König, Thomas Schubert, Gernot Längst
Software Mentions: 2
Published: over 7 years ago

10.1155/2019/1860275

Multidrug-Resistant <i>Salmonella enterica</i> Serovar Rissen Clusters Detected in Azores Archipelago, Portugal
Cited by: 8
Author(s): Leonor Silveira, Miguel Pinto, Joana Isidro, Ângela Pista, Patrícia Themudo, Luı́s Vieira, Jorge Machado, João Paulo Gomes
Software Mentions: 2
Published: almost 5 years ago

10.1186/1748-7188-8-8

Resolving spatial inconsistencies in chromosome conformation measurements
Cited by: 11
Author(s): Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0157988

A Novel Clustering Methodology Based on Modularity Optimisation for Detecting Authorship Affinities in Shakespearean Era Plays
Cited by: 9
Author(s): Leila Moslemi Naeni, Hugh Craig, Regina Berretta, Pablo Moscato
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms21155257

Exploring IDP–Ligand Interactions: Tau K18 as a Test Case
Cited by: 9
Author(s): Darius Vagrys, James Davidson, I‐Jen Chen, Roderick E. Hubbard, Ben Davis
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-13-194

CLAG: an unsupervised non hierarchical clustering algorithm handling biological data
Cited by: 19
Author(s): Linda Dib, Alessandra Carbone
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-019-45233-9

The SRP signal sequence of KdpD
Cited by: 3
Author(s): Eva Proß, Andreas Kühn
Software Mentions: 2
Published: over 5 years ago

10.1128/JVI.01541-17

The Three-Fold Axis of the HIV-1 Capsid Lattice Is the Species-Specific Binding Interface for TRIM5α
Cited by: 20
Author(s): Damien Morger, Franziska Zosel, Martin Bühlmann, Sara Züger, Maximilian Mittelviefhaus, Benjamin Schuler, Jeremy Luban, Markus G. Grütter
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijerph15030508

Internalized Transphobia, Resilience, and Mental Health: Applying the Psychological Mediation Framework to Italian Transgender Individuals
Cited by: 68
Author(s): Cristiano Scandurra, Vincenzo Bochicchio, Anna Lisa Amodeo, Concetta Esposito, Paolo Valerio, Mauro Maldonato, Dario Bacchini, Roberto Vitelli
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0025617

Population Structure of Pseudomonas aeruginosa from Five Mediterranean Countries: Evidence for Frequent Recombination and Epidemic Occurrence of CC235
Cited by: 120
Author(s): Makaoui Maâtallah, Jihane Cheriaa, Amina Backhrouf, Aina Iversen, Hajo Grundmann, Thuy Do, Philippe Lanotte, Maha Mastouri, Mohamed Salem Elghmati, Fernando Rojo, Mejdi Snoussi, Christian G. Giske
Software Mentions: 2
Published: about 13 years ago

10.1038/s41598-021-93816-2

Biological scaling in green algae: the role of cell size and geometry
Cited by: 4
Author(s): Helena Bestová, Jules Segrestin, Klaus von Schwartzenberg, Pavel Škaloud, Thomas Lenormand, Cyrille Violle
Software Mentions: 2
Published: over 3 years ago

10.1093/hmg/ddu269

Inheritance of rare functional GCKR variants and their contribution to triglyceride levels in families
Cited by: 21
Author(s): Matthew G. Rees, Anne Raimondo, Jian Wang, Matthew R. Ban, Mindy I. Davis, Amy Barrett, Jessica Ranft, David Jagdhuhn, Rica Waterstradt, Simone Baltrusch, Anton Simeonov, Francis S. Collins, Robert A. Hegele, Anna L. Gloyn
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-020-69358-4

Single-cell mass cytometry on peripheral blood identifies immune cell subsets associated with primary biliary cholangitis
Cited by: 12
Author(s): Jin Sung Jang, Brian D. Juran, Kevin Y. Cunningham, Vinod Kumar Gupta, Young Min Son, Ju Dong Yang, Ahmad H. Ali, Elizabeth Ann L. Enninga, Jaeyun Sung, Konstantinos N. Lazaridis
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-12-463

Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: Prediction and validation
Cited by: 13
Author(s): Moumita Datta, Ananyo Choudhury, Ansuman Lahiri, Nitai P. Bhattacharyya
Software Mentions: 2
Published: about 13 years ago

10.3390/s150612273

Random and Directed Walk-Based Top- Queries in Wireless Sensor Networks
Cited by: 1
Author(s): Junsong Fu, Yun Liu
Software Mentions: 2
Published: over 9 years ago

10.1186/s12890-021-01567-7

Spatial clustering and genetic diversity of Mycobacterium tuberculosis isolate among pulmonary tuberculosis suspected patients, Arsi Zone, Ethiopia
Cited by: 1
Author(s): Ketema Tafess, Teresa Kisi Beyen, Sisay Girma, Asnakech Girma, Gilman Kit-Hang Siu
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.48591

Maternal spindle transfer overcomes embryo developmental arrest caused by ooplasmic defects in mice
Cited by: 19
Author(s): Nuno Costa-Borges, K Spath, Irene Miguel-Escalada, Enric Mestres, Rosa Balmaseda, Anna Serafín, M. G. García-Jiménez, Ivette Vanrell, J. González, Klaus Rink, Dagan Wells, Gloria Calderón
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21062190

Attenuation of Pseudomonas aeruginosa Quorum Sensing by Natural Products: Virtual Screening, Evaluation and Biomolecular Interactions
Cited by: 35
Author(s): Liang Zhong, Vinothkannan Ravichandran, Na Zhang, Hailong Wang, Xiaoying Bian, Youming Zhang, Aiying Li
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.19401

Ningnanmycin inhibits tobacco mosaic virus virulence by binding directly to its coat protein discs
Cited by: 34
Author(s): Xiangyang Li, Ge‐Fei Hao, Qingmin Wang, Zhuo Chen, Yan Ding, Yu Lu, Deyu Hu, Baoan Song
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-14101-9

Structure determination and activity manipulation of the turfgrass ABA receptor FePYR1
Cited by: 14
Author(s): Zhizhong Ren, Zhen Wang, Xin Zhou, Huazhong Shi, Yechun Hong, Min‐Jie Cao, Zhulong Chan, Lixin Xue, H. Eric Xu, Jian‐Kang Zhu
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-021-88826-z

Phosphorylation of the WH2 domain in yeast Las17/WASP regulates G-actin binding and protein function during endocytosis
Cited by: 1
Author(s): Joe Tyler, Iwona I. Smaczynska-de Rooij, Liemya Abugharsa, Jack Palmer, L. P. Hancock, Ellen G. Allwood, Kathryn R. Ayscough
Software Mentions: 2
Published: over 3 years ago

10.3390/jof7070553

A Fungal Defensin Targets the SARS−CoV−2 Spike Receptor−Binding Domain
Cited by: 11
Author(s): Bin Gao, Shunyi Zhu
Software Mentions: 2
Published: over 3 years ago

10.1194/jlr.M082388

Hypoxia-inducible lipid droplet-associated protein inhibits adipose triglyceride lipase
Cited by: 58
Author(s): Krishna Mohan Das, Lisa Wechselberger, Márton Liziczai, Montserrat Rodríguez, G Grabner, Christoph Heier, Roland Viertlmayr, Claudia Radler, Joerg Lichtenegger, R. Zimmermann, Jan Willem Borst, Rudolf Zechner, Sander Kersten, Monika Oberer
Software Mentions: 2
Published: almost 7 years ago

10.1074/jbc.RA118.003351

PROMIS, global analysis of PROtein–metabolite interactions using size separation in Arabidopsis thaliana
Cited by: 49
Author(s): Daniel Veyel, Ewelina Sokołowska, Juan C. Moreno, Sylwia Kierszniowska, Justyna Cichon, Izabela Wojciechowska, Marcin Luzarowski, Monika Kosmacz, Jagoda Szlachetko, Michał Górka, Michaël Méret, Alexander Graf, Etienne H. Meyer, Lothar Willmitzer
Software Mentions: 2
Published: over 6 years ago

10.3389/fpsyg.2021.509844

Automated Test Assembly for Multistage Testing With Cognitive Diagnosis
Cited by: 1
Author(s): Guiyu Li, Yan Cai, Xuliang Gao, Daxun Wang, Dongbo Tu
Software Mentions: 2
Published: over 3 years ago

10.1002/hbm.24862

Neural bases of self‐ and object‐motion in a naturalistic vision
Cited by: 32
Author(s): Sabrina Pitzalis, Chiara Serra, Valentina Sulpizio, Giorgia Committeri, Francesco de Pasquale, Patrizia Fattori, Claudio Galletti, Rosamaria Sepe, Gaspare Galati
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-90472-4

Single tryptophan Y160W mutant of homooligomeric E. coli purine nucleoside phosphorylase implies that dimers forming the hexamer are functionally not equivalent
Cited by: 3
Author(s): Marta Narczyk, Łukasz Mioduszewski, Aleksandra Oksiejuk, Maria Winiewska-Szajewska, Beata Wielgus‐Kutrowska, Adrian Gojdź, Joanna Cieśla, Agnieszka Bzowska
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2017.02258

Molecular Epidemiology of Bacterial Wilt in the Madagascar Highlands Caused by Andean (Phylotype IIB-1) and African (Phylotype III) Brown Rot Strains of the Ralstonia solanacearum Species Complex
Cited by: 35
Author(s): Santatra Ravelomanantsoa, Christian Vernière, Adrien Rieux, Laurent Costet, Frédéric Chiroleu, Sandrine Arribat, Gilles Cellier, Olivier Pruvost, Stéphane Poussier, Isabelle Robène, Fabien Guérin, Philippe Prior
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0122133

Clustering Consumers Based on Trust, Confidence and Giving Behaviour: Data-Driven Model Building for Charitable Involvement in the Australian Not-For-Profit Sector
Cited by: 17
Author(s): Natalie Jane de Vries, Rodrigo Citton Padilha dos Reis, Pablo Moscato
Software Mentions: 2
Published: over 9 years ago

10.3389/fnhum.2015.00480

Home-based neurologic music therapy for upper limb rehabilitation with stroke patients at community rehabilitation stage—a feasibility study protocol
Cited by: 23
Author(s): Alexander J. Street, Wendy L. Magee, Helen Odell‐Miller, Andrew Bateman, Jörg Fachner
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.ppat.1007620

The fungal ribonuclease-like effector protein CSEP0064/BEC1054 represses plant immunity and interferes with degradation of host ribosomal RNA
Cited by: 92
Author(s): Helen G. Pennington, Rhian Jones, Seomun Kwon, Giulia Bonciani, Hannah Thieron, Thomas Chandler, Peggy Luong, Sian Natasha Morgan, Michal Przydacz, Tolga O. Bozkurt, Sarah Bowden, Melanie Craze, Emma J. Wallington, James A. Garnett, Mark Kwaaitaal, Ralph Panstruga, Ernesto Cota, Pietro D. Spanu
Software Mentions: 2
Published: over 5 years ago

10.1002/1873-3468.13246

Tripeptide binding in a proton‐dependent oligopeptide transporter
Cited by: 20
Author(s): Maria Martinez Molledo, E.M. Quistgaard, Christian Löw
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0113539

Klebsiella variicola Is a Frequent Cause of Bloodstream Infection in the Stockholm Area, and Associated with Higher Mortality Compared to K. pneumoniae
Cited by: 120
Author(s): Makaoui Maãtallah, M. Vading, Muhammad Humaun Kabir, Amina Bakhrouf, Mats Kalin, Pontus Nauclér, Sylvain Brisse, Christian G. Giske
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pcbi.1000488

A Combinatorial Approach to Detect Coevolved Amino Acid Networks in Protein Families of Variable Divergence
Cited by: 25
Author(s): Julie Baussand, Alessandra Carbone
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2105-14-66

Local search for the generalized tree alignment problem
Cited by: 18
Author(s): Andrés Varón, Ward C. Wheeler
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pgen.1000212

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph
Cited by: 474
Author(s): Yan-Ling Wu, Prasanna R. Bhat, Timothy J. Close, Stefano Lonardi
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0002433

Multispacer Sequence Typing for Mycobacterium tuberculosis Genotyping
Cited by: 29
Author(s): Zoheira Djelouadji, Catherine Arnold, Saheer E. Gharbia, Didier Raoult, Michel Drancourt
Software Mentions: 2
Published: over 16 years ago

10.1007/s10566-016-9388-4

It’s not just the Therapist: Therapist and Country-Wide Experience Predict Therapist Adherence and Adolescent Outcome
Cited by: 7
Author(s): Aurelie M. C. Lange, Rachel E. A. van der Rijken, Jan J. V. Busschbach, Marc J. M. H. Delsing, Ron H. J. Scholte
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0056093

Rapid Focused Sequencing: A Multiplexed Assay for Simultaneous Detection and Strain Typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
Cited by: 12
Author(s): Rosemary S. Turingan, Hans-Ulrich Thomann, Anna Zolotova, Eugene Tan, Richard F. Selden
Software Mentions: 2
Published: almost 12 years ago

10.3390/polym12122983

An In-Silico Pipeline for Rapid Screening of DNA Aptamers against Mycotoxins: The Case-Study of Fumonisin B1, Aflatoxin B1 and Ochratoxin A
Cited by: 9
Author(s): Fulvio Ciriaco, Vincenzo De Leo, Michelangelo Pascale, Antonio F. Logrieco, Maria C. DeRosa, Annalisa De Girolamo
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms22041711

Synthesis and Biological Evaluation of Oleanolic Acid Derivatives as Selective Vascular Endothelial Growth Factor Promoter i-Motif Ligands
Cited by: 4
Author(s): Huang Zeng, Shuangshuang Kang, Yu Zhang, Ke Liu, Qian Yu, Ding Li, Lin‐Kun An
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1006459

An information theoretic treatment of sequence-to-expression modeling
Cited by: 4
Author(s): Farzaneh Khajouei, Saurabh Sinha
Software Mentions: 1
Published: about 6 years ago

10.1042/BSR20182189

Myosin Va interacts with the exosomal protein spermine synthase
Cited by: 3
Author(s): Luciano G. Dolce, Rui Milton Patrício da Silva-Júnior, Leandro H. P. Assis, Andrey Fabricio Ziem Nascimento, Jackeline S. Araujo, Ingrid P. Meschede, Enilza Maria Espreáfico, P.O. Giuseppe, Mário Tyago Murakami
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.3000593

How the initiating ribosome copes with ppGpp to translate mRNAs
Cited by: 37
Author(s): Daria S. Vinogradova, Victor Zegarra, Elena Maksimova, Jose A. Nakamoto, Pavel Kasatsky, Alena Paleskava, Andrey L. Konevega, Pohl Milón
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2180-7-72

Identification of rickettsial isolates at the species level using multi-spacer typing
Cited by: 35
Author(s): Pierre‐Edouard Fournier, Didier Raoult
Software Mentions: 1
Published: almost 18 years ago

10.1186/s13007-020-00641-1

Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis
Cited by: 11
Author(s): Wanchen Shao, Rita Sharma, Mads Hartvig Clausen, Henrik Vibe Scheller
Software Mentions: 1
Published: over 4 years ago

10.3390/pharmaceutics12060554

Microscale Thermophoresis as a Screening Tool to Predict Melanin Binding of Drugs
Cited by: 18
Author(s): Laura Hellinen, Sina Bahrpeyma, Anna‐Kaisa Rimpelä, Marja Hagström, Mika Reinisalo, Arto Urtti
Software Mentions: 1
Published: over 4 years ago

10.3390/biom9020048

A Biophysical Approach to the Identification of Novel ApoE Chemical Probes
Cited by: 7
Author(s): Lucas Kraft, Louise C. Serpell, John Atack
Software Mentions: 1
Published: almost 6 years ago

10.3390/pathogens9010030

New Genotypes of Coxiella burnetii Circulating in Brazil and Argentina
Cited by: 18
Author(s): Mateus de Souza Ribeiro Mioni, Karim Sidi-Boumedine, Felipe Morales Dalanezi, Sâmea Fernandes Joaquim, Renan Denadai, Wanderson Sirley Reis Teixeira, Marcelo Bahia Labruna, Jane Megid
Software Mentions: 1
Published: almost 5 years ago

10.1111/bioe.12187

Mitochondrial Replacement: Ethics and Identity
Cited by: 48
Author(s): Anthony Wrigley, Stephen Wilkinson, John Appleby
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2180-13-3

Mycobacterium abscessus multispacer sequence typing
Cited by: 18
Author(s): Mohamed Sassi, Imen Ben Kahla, Michel Drancourt
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12876-020-01587-3

Simultaneous brain and lung metastases of pancreatic ductal adenocarcinoma after curative pancreatectomy: a case report and literature review
Cited by: 2
Author(s): Yoshito Oka, Shigetsugu Takano, Yusuke Kouchi, Katsunori Furukawa, Tsukasa Takayashiki, Satoshi Kuboki, Daisuke Suzuki, Nozomu Sakai, Shingo Kagawa, Isamu Hosokawa, Takashi Mishima, Tadataka Konishi, Takashi Kishimoto, Masayuki Ohtsuka
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13071-015-1089-6

Ubiquitous bacteria Borrelia crocidurae in Western African ticks Ornithodoros sonrai
Cited by: 10
Author(s): Haitham Elbir, Aurélien FotsoFotso, Georges Diatta, Jean François Trape, Céline Arnathau, François Renaud, Patrick Durand
Software Mentions: 1
Published: about 9 years ago

10.1186/1756-3305-6-367

Multispacer typing of Rickettsia isolates from humans and ticks in Tunisia revealing new genotypes
Cited by: 22
Author(s): Abir Znazen, Fatma Khrouf, Nihel Elleuch, D. Lahiani, C. Marrekchi, Youmna M’ghirbi, Mounir Ben Jemâa, Ali Bouattour, Adnène Hammami
Software Mentions: 1
Published: about 11 years ago

10.1155/2020/5204927

Social Cognition in Rehabilitation Context: Different Evolution of Affective and Cognitive Theory of Mind in Mild Cognitive Impairment
Cited by: 12
Author(s): Federica Rossetto, Francesca Baglio, Davide Massaro, Margherita Alberoni, Raffaello Nemni, Antonio Marchetti, Ilaria Castelli
Software Mentions: 1
Published: almost 5 years ago

10.11604/pamj.2018.31.107.15517

Implementing infection prevention and control capacity building strategies within the context of Ebola outbreak in a "Hard-to-Reach" area of Liberia
Cited by: 9
Author(s): Michael Ogbonnaya Oji, Mesfin Haile, April Baller, Nathalie Tremblay, Nuha Mahmoud, Alex Gasasira, Victor Ladele, Catherine Cooper, Francis Kateh, Tolbert Nyenswah, Peter Nsubuga
Software Mentions: 1
Published: almost 7 years ago

10.1186/1746-6148-8-241

Genotyping of Coxiella burnetiifrom domestic ruminants in northern Spain
Cited by: 44
Author(s): Ianire Astobiza, Jeroen J. H. C. Tilburg, Alvaro Piñero, Ana Hurtado, Ana L. García-Pérez, Marrigje H. Nabuurs-Franssen, Corné H. W. Klaassen
Software Mentions: 1
Published: about 12 years ago

10.1080/21505594.2021.1975527

<i>Coxiella burnetii</i> infections in mice: Immunological responses to contemporary genotypes found in the US
Cited by: 0
Author(s): Rachael A. Priestley, Cody B. Smith, Halie K. Miller, Gilbert J. Kersh
Software Mentions: 1
Published: about 3 years ago

10.1186/s13567-017-0491-9

Nanobodies targeting conserved epitopes on the major outer membrane protein of Campylobacter as potential tools for control of Campylobacter colonization
Cited by: 17
Author(s): Charlotte Vanmarsenille, InĂŠs DĂ­az del Olmo, Jelle Elseviers, Gholamreza Hassanzadeh Ghassabeh, Kristof Moonens, Didier Vertommen, An Martel, Freddy Haesebrouck, Frank Pasmans, Jean-Pierre Hernálsteens, Henri De Greve
Software Mentions: 1
Published: about 7 years ago

10.1186/s12917-018-1499-8

Genetic diversity of Coxiella burnetii in domestic ruminants in central Italy
Cited by: 9
Author(s): Marco Di Domenico, Valentina Curini, Valeria Di Lollo, M. Massimini, Luigina Di Gialleonardo, Alessia Franco, Andrea Caprioli, Antonio Battisti, Cesare Cammà
Software Mentions: 1
Published: over 6 years ago

10.3390/vaccines9060642

Augmenting the Immune Response against a Stabilized HIV-1 Clade C Envelope Trimer by Silica Nanoparticle Delivery
Cited by: 6
Author(s): David Peterhoff, Stefanie Thalhauser, Jan M. Sobczak, Mona O. Mohsen, Christoph Voigt, Nicole Seifert, Patrick Neckermann, Alexandra Hauser, Song Ding, Quentin J. Sattentau, Martin F. Bachmann, Miriam Breunig, Ralf Wagner
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0030823

Microevolution of Pandemic Vibrio parahaemolyticus Assessed by the Number of Repeat Units in Short Sequence Tandem Repeat Regions
Cited by: 11
Author(s): Katherine García, Ronnie G. Gavilán, Manfred G. Höfle, Jaime Martı́nez-Urtaza, Romilio T. Espejo
Software Mentions: 1
Published: almost 13 years ago

10.1007/s40592-016-0059-x

Mitochondrial replacement techniques: egg donation, genealogy and eugenics
Cited by: 15
Author(s): César Palacios-González
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12917-015-0517-3

Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana
Cited by: 18
Author(s): Amy E. Bauer, Sonora Olivas, M. G. Cooper, Heidie Hornstra, Paul Keim, Talima Pearson, April J. Johnson
Software Mentions: 1
Published: over 9 years ago

10.1186/s12879-021-06737-w

Genotypic and phenotypic characteristics of Streptococcus pneumoniae from community-acquired pneumonia patients and healthy asymptomatic participants in Sichuan province, China
Cited by: 4
Author(s): Shihui Peng, Hongyan Ren, Jianping Deng, Na Zhao, Yinan Li, Ming Li, Qiwu Yuan, Zhengdong Zhang, Longze Luo, Linzi Zeng, Bin Wang, Nianli Zou, Changguo Gu, Xin Huang, Zheng Er Liao, Shen-En Chen, Haiying Chen, Qun Li, Tian Qin
Software Mentions: 1
Published: about 3 years ago

10.3390/ani9090655

A Transcriptomic Study of the Tail Fat Deposition in Two Types of Hulun Buir Sheep According to Tail Size and Sex
Cited by: 11
Author(s): Hongying Fan, Yali Hou, Goutam Sahana, Hongding Gao, Caiye Zhu, Lixin Du, Fuping Zhao, Lixian Wang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0223173

Sugar transporters in Fabaceae, featuring SUT MST and SWEET families of the model plant Medicago truncatula and the agricultural crop Pisum sativum
Cited by: 39
Author(s): Joan Doidy, Ugo Vidal, Rémi Lemoine
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0112789

Characterization of the Genetic Diversity of Extensively-Drug Resistant Mycobacterium tuberculosis Clinical Isolates from Pulmonary Tuberculosis Patients in Peru
Cited by: 19
Author(s): Omar Cáceres, Nalin Rastogi, Carlos Bartra, David Couvin, Marco Galarza, Luis Asencios, Alberto Mendoza‐Ticona
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.omtn.2019.08.019

Studying Interactions between 2’-O-Me-Modified Inhibitors and MicroRNAs Utilizing Microscale Thermophoresis
Cited by: 5
Author(s): Markus Herkt, Sándor Bátkai, Thomas Thum
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0001130

The Allometry of Host-Pathogen Interactions
Cited by: 51
Author(s): Jessica M. Cable, Brian J. Enquist, Melanie E. Moses
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0061003

Sequence Analysis of 96 Genomic Regions Identifies Distinct Evolutionary Lineages within CC156, the Largest Streptococcus pneumoniae Clonal Complex in the MLST Database
Cited by: 8
Author(s): Monica Moschioni, Morena Lo Sapio, Giovanni Crisafulli, Giulia Torricelli, Silvia Guidotti, Alessandro Muzzi, Michèle A. Barocchi, Claudio Donati
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0071586

Expression and Function of the Lipocalin-2 (24p3/NGAL) Receptor in Rodent and Human Intestinal Epithelia
Cited by: 25
Author(s): Christian Langelueddecke, Eleni Roussa, Robert A. Fenton, Frank Thévenod
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0226504

Time evolution of the behaviour of Brazilian legislative Representatives using a complex network approach
Cited by: 2
Author(s): Ludwing Marenco, Humberto A. Carmona, Felipe Maciel Cardoso, José S. Andrade, Carlos L. César
Software Mentions: 1
Published: almost 5 years ago