Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

cran projects 6,234

cran: devtools
Tools to Make Developing R Packages Easier
Papers that mentioned: 157
cran: rgl
3D Visualization Using OpenGL
Papers that mentioned: 156
cran: semTools
Useful Tools for Structural Equation Modeling
Papers that mentioned: 155
cran: quantreg
Quantile Regression
Papers that mentioned: 154
cran: COVID19
R Interface to COVID-19 Data Hub
Papers that mentioned: 154
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: DescTools
Tools for Descriptive Statistics
Papers that mentioned: 152
cran: R2WinBUGS
Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
Papers that mentioned: 150
cran: rcompanion
Functions to Support Extension Education Program Evaluation
Papers that mentioned: 149
cran: MCID
Estimating the Minimal Clinically Important Difference
Papers that mentioned: 148
cran: pgirmess
Spatial Analysis and Data Mining for Field Ecologists
Papers that mentioned: 148
cran: DES
Discrete Event Simulation
Papers that mentioned: 147
cran: forestplot
Advanced Forest Plot Using 'grid' Graphics
Papers that mentioned: 146
cran: activPAL
Advanced Processing and Chart Generation from activPAL Events Files
Papers that mentioned: 144
cran: rgeos
Interface to Geometry Engine - Open Source ('GEOS')
Papers that mentioned: 144
cran: boot
Bootstrap Functions (Originally by Angelo Canty for S)
Papers that mentioned: 143
cran: randomForestSRC
Fast Unified Random Forests for Survival, Regression, and Classification (RF-SRC)
Papers that mentioned: 143
cran: keras
R Interface to 'Keras'
Papers that mentioned: 141
cran: Eagle
Multiple Locus Association Mapping on a Genome-Wide Scale
Papers that mentioned: 140
cran: readxl
Read Excel Files
Papers that mentioned: 139
cran: gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
Papers that mentioned: 138
cran: pls
Partial Least Squares and Principal Component Regression
Papers that mentioned: 137
cran: AFM
Atomic Force Microscope Image Analysis
Papers that mentioned: 137
cran: maps
Draw Geographical Maps
Papers that mentioned: 137
cran: netmeta
Network Meta-Analysis using Frequentist Methods
Papers that mentioned: 136
cran: CC
Control Charts
Papers that mentioned: 136
cran: PMCMR
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Papers that mentioned: 135
cran: LEAP
Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
Papers that mentioned: 135
cran: coin
Conditional Inference Procedures in a Permutation Test Framework
Papers that mentioned: 135
cran: iCluster
Integrative clustering of multiple genomic data types
Papers that mentioned: 134
cran: Rcmdr
R Commander
Papers that mentioned: 133
cran: rstan
R Interface to Stan
Papers that mentioned: 133
cran: sjPlot
Data Visualization for Statistics in Social Science
Papers that mentioned: 133
cran: vioplot
Violin Plot
Papers that mentioned: 133
cran: SNPassoc
SNPs-Based Whole Genome Association Studies
Papers that mentioned: 132
cran: ggfortify
Data Visualization Tools for Statistical Analysis Results
Papers that mentioned: 132
cran: JM
Joint Modeling of Longitudinal and Survival Data
Papers that mentioned: 132
cran: rptR
Repeatability Estimation for Gaussian and Non-Gaussian Data
Papers that mentioned: 132
cran: haplo.stats
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
Papers that mentioned: 131
cran: rmda
Risk Model Decision Analysis
Papers that mentioned: 131
cran: ROSE
Random Over-Sampling Examples
Papers that mentioned: 131
cran: LCA
Localised Co-Dependency Analysis
Papers that mentioned: 129
cran: DFA
Detrended Fluctuation Analysis
Papers that mentioned: 128
cran: DCA
Dynamic Correlation Analysis for High Dimensional Data
Papers that mentioned: 128
cran: MPS
Estimating Through the Maximum Product Spacing Approach
Papers that mentioned: 128
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
cran: PROSPER
Simulation of Weed Population Dynamics
Papers that mentioned: 126
cran: coda
Output Analysis and Diagnostics for MCMC
Papers that mentioned: 126
cran: LA
Lioness Algorithm (LA)
Papers that mentioned: 126
cran: ROCS
Receiver Operating Characteristics Surface
Papers that mentioned: 125
cran: sf
Simple Features for R
Papers that mentioned: 125
cran: fdrtool
Estimation of (Local) False Discovery Rates and Higher Criticism
Papers that mentioned: 124
cran: gemtc
Network Meta-Analysis Using Bayesian Methods
Papers that mentioned: 123
cran: rstatix
Pipe-Friendly Framework for Basic Statistical Tests
Papers that mentioned: 123
cran: piecewiseSEM
Piecewise Structural Equation Modeling
Papers that mentioned: 123
cran: reshape
Flexibly Reshape Data
Papers that mentioned: 123
cran: Delta
Measure of Agreement Between Two Raters
Papers that mentioned: 122
cran: R2jags
Using R to Run 'JAGS'
Papers that mentioned: 121
cran: fitdistrplus
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
Papers that mentioned: 120
cran: RAD
Fit RAD models to biological data
Papers that mentioned: 120
cran: Morpho
Calculations and Visualisations Related to Geometric Morphometrics
Papers that mentioned: 118
cran: RAP
Reversal Association Pattern
Papers that mentioned: 118
cran: RAM
R for Amplicon-Sequencing-Based Microbial-Ecology
Papers that mentioned: 117
cran: GUIDE
GUI for DErivatives in R
Papers that mentioned: 117
cran: pegas
Population and Evolutionary Genetics Analysis System
Papers that mentioned: 117
cran: ICE
Iterated Conditional Expectation
Papers that mentioned: 116
cran: BiodiversityR
Package for Community Ecology and Suitability Analysis
Papers that mentioned: 115
cran: beast
Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series
Papers that mentioned: 115
cran: Recon
Computational Tools for Economics
Papers that mentioned: 114
cran: bbmle
Tools for General Maximum Likelihood Estimation
Papers that mentioned: 114
cran: Risk
Computes 26 Financial Risk Measures for Any Continuous Distribution
Papers that mentioned: 114
cran: samr
SAM: Significance Analysis of Microarrays
Papers that mentioned: 114
cran: gamlss
Generalised Additive Models for Location Scale and Shape
Papers that mentioned: 113
cran: biomod2
Ensemble Platform for Species Distribution Modeling
Papers that mentioned: 113
cran: bnlearn
Bayesian Network Structure Learning, Parameter Learning and Inference
Papers that mentioned: 113
cran: geosphere
Spherical Trigonometry
Papers that mentioned: 112
cran: mvmeta
Multivariate and Univariate Meta-Analysis and Meta-Regression
Papers that mentioned: 112
cran: mvabund
Statistical Methods for Analysing Multivariate Abundance Data
Papers that mentioned: 112
cran: DOT
Render and Export DOT Graphs in R
Papers that mentioned: 112
cran: ExomeDepth
Calls Copy Number Variants from Targeted Sequence Data
Papers that mentioned: 112
cran: gam
Generalized Additive Models
Papers that mentioned: 112
cran: betapart
Partitioning Beta Diversity into Turnover and Nestedness Components
Papers that mentioned: 111
cran: gamm4
Generalized Additive Mixed Models using 'mgcv' and 'lme4'
Papers that mentioned: 111
cran: fmsb
Functions for Medical Statistics Book with some Demographic Data
Papers that mentioned: 111
cran: GAD
Analysis of variance from general principles
Papers that mentioned: 111
cran: seqinr
Biological Sequences Retrieval and Analysis
Papers that mentioned: 110
cran: plotrix
Various Plotting Functions
Papers that mentioned: 110
cran: SIBER
Stable Isotope Bayesian Ellipses in R
Papers that mentioned: 110
cran: smatr
(Standardised) Major Axis Estimation and Testing Routines
Papers that mentioned: 109
cran: NMF
Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
Papers that mentioned: 108
cran: mstate
Data Preparation, Estimation and Prediction in Multi-State Models
Papers that mentioned: 108
cran: Distance
Distance Sampling Detection Function and Abundance Estimation
Papers that mentioned: 108
cran: EMT
Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate Data
Papers that mentioned: 108
cran: origin
Explicitly Qualifying Namespaces by Automatically Adding 'pkg::' to Functions
Papers that mentioned: 107
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
cran: Amelia
A Program for Missing Data
Papers that mentioned: 106
cran: betareg
Beta Regression
Papers that mentioned: 106
cran: AF
Model-Based Estimation of Confounder-Adjusted Attributable Fractions
Papers that mentioned: 106
cran: ez
Easy Analysis and Visualization of Factorial Experiments
Papers that mentioned: 106
cran: epitools
Epidemiology Tools
Papers that mentioned: 105