Data

Tools

Indexes

Applications

Experiments

Papers

cran: ENMTools
Analysis of Niche Evolution using Niche and Distribution Models
Papers that mentioned: 181
Very Likely Science (85)
cran: NbClust
Determining the Best Number of Clusters in a Data Set
Papers that mentioned: 181
Very Likely Science (75)
pypi: David
Papers that mentioned: 180
Very Likely Science (65)
cran: deSolve
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
Papers that mentioned: 179
Very Likely Science (85)
pypi: geiger
A radiation detection utility package
Papers that mentioned: 179
Very Likely Science (60)
pypi: PhyloSuite
A desktop platform for streamlined molecular sequence data management and state of the art evolutionary phylogenetics studies.
Papers that mentioned: 179
Very Likely Science (75)
cran: geiger
Analysis of Evolutionary Diversification
Papers that mentioned: 179
Very Likely Science (93)
cran: missForest
Nonparametric Missing Value Imputation using Random Forest
Papers that mentioned: 178
Very Likely Science (100)
cran: PAS
Polygenic Analysis System (PAS)
Papers that mentioned: 178
Very Likely Science (85)
cran: hierfstat
Estimation and Tests of Hierarchical F-Statistics
Papers that mentioned: 178
Very Likely Science (100)
bioconductor: FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
Papers that mentioned: 177
Very Likely Science (75)
cran: afex
Analysis of Factorial Experiments
Papers that mentioned: 176
Very Likely Science (100)
pypi: QSAR
Python library for QSAR model from Juvena Machine Learning Team.
Papers that mentioned: 176
Very Likely Science (75)
pypi: pipeline
Easy shell-like pipelines, with input from a file-like object
Papers that mentioned: 175
Very Likely Science (65)
cran: ACD
Categorical data analysis with complete or missing responses
Papers that mentioned: 174
Very Likely Science (85)
bioconductor: TOAST
Tools for the analysis of heterogeneous tissues
Papers that mentioned: 174
Very Likely Science (100)
cran: IMP
Interactive Model Performance Evaluation
Papers that mentioned: 172
Very Likely Science (75)
bioconductor: GENIE3
GEne Network Inference with Ensemble of trees
Papers that mentioned: 172
Very Likely Science (100)
cran: spatstat
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Papers that mentioned: 172
Very Likely Science (93)
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
Very Likely Science (100)
cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
Very Likely Science (75)
pypi: COS
Utilities for data taken with the Cosmic Origins Spectrograph on the Hubble Space Telescope
Papers that mentioned: 171
Very Likely Science (80)
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
Very Likely Science (100)
bioconductor: metagenomeSeq
Statistical analysis for sparse high-throughput sequencing
Papers that mentioned: 169
Very Likely Science (100)
pypi: IM
IM is a tool to manage virtual infrastructures on Cloud deployments
Papers that mentioned: 168
Very Likely Science (65)
bioconductor: muscle
Multiple Sequence Alignment with MUSCLE
Papers that mentioned: 166
Very Likely Science (100)
pypi: muscle
Strength Training Program Generator
Papers that mentioned: 166
Very Likely Science (90)
pypi: xia2
An expert system for automated reduction of X-Ray diffraction data from macromolecular crystals
Papers that mentioned: 165
Very Likely Science (100)
pypi: java
Papers that mentioned: 165
Unlikely Science (0)
cran: GAS
Generalized Autoregressive Score Models
Papers that mentioned: 165
Very Likely Science (93)
pypi: Blackboard
A Python Multicast Client
Papers that mentioned: 164
Very Likely Science (65)
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
Very Likely Science (100)
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163
Very Likely Science (90)
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
Very Likely Science (100)
bioconductor: affyPLM
Methods for fitting probe-level models
Papers that mentioned: 162
Very Likely Science (100)
pypi: CNVkit
Copy number variation toolkit for high-throughput sequencing.
Papers that mentioned: 161
Very Likely Science (65)
bioconductor: ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Papers that mentioned: 161
Very Likely Science (100)
cran: labdsv
Ordination and Multivariate Analysis for Ecology
Papers that mentioned: 161
Very Likely Science (93)
pypi: Navigator
A framework to create simple, interactive command line tools.
Papers that mentioned: 161
Very Likely Science (65)
cran: MOST
Multiphase Optimization Strategy
Papers that mentioned: 160
Very Likely Science (85)
bioconductor: Mfuzz
Soft clustering of time series gene expression data
Papers that mentioned: 160
Very Likely Science (100)
bioconductor: multtest
Resampling-based multiple hypothesis testing
Papers that mentioned: 158
Very Likely Science (98)
cran: CARS
Covariate Assisted Ranking and Screening for Large-Scale Two-Sample Inference
Papers that mentioned: 158
Very Likely Science (75)
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
Very Likely Science (75)
pypi: devtools
Python's missing debug print command, and more.
Papers that mentioned: 157
Very Likely Science (80)
pypi: qiime
Quantitative Insights Into Microbial Ecology
Papers that mentioned: 157
Very Likely Science (90)
cran: devtools
Tools to Make Developing R Packages Easier
Papers that mentioned: 157
Very Likely Science (100)
cran: COMBAT
A Combined Association Test for Genes using Summary Statistics
Papers that mentioned: 157
Very Likely Science (85)
cran: FD
Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology
Papers that mentioned: 157
Very Likely Science (85)
cran: kernlab
Kernel-Based Machine Learning Lab
Papers that mentioned: 157
Very Likely Science (85)
pypi: SurveyGizmo
A Python Wrapper for SurveyGizmo's restful API service.
Papers that mentioned: 156
Very Likely Science (85)
cran: rgl
3D Visualization Using OpenGL
Papers that mentioned: 156
Very Likely Science (100)
pypi: velvet
Beautiful signal processing and communications algorithms in Python
Papers that mentioned: 156
Very Likely Science (90)
pypi: Django
A high-level Python web framework that encourages rapid development and clean, pragmatic design.
Papers that mentioned: 155
Very Likely Science (65)
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
Very Likely Science (100)
cran: semTools
Useful Tools for Structural Equation Modeling
Papers that mentioned: 155
Very Likely Science (100)
pypi: windows
This package name is reserved by Microsoft Corporation
Papers that mentioned: 154
Unlikely Science (5)
bioconductor: DNAcopy
DNA Copy Number Data Analysis
Papers that mentioned: 154
Very Likely Science (100)
cran: COVID19
R Interface to COVID-19 Data Hub
Papers that mentioned: 154
Very Likely Science (75)
pypi: learn
A simple printer of nested lines
Papers that mentioned: 154
Very Likely Science (65)
bioconductor: methylKit
DNA methylation analysis from high-throughput bisulfite sequencing results
Papers that mentioned: 154
Very Likely Science (75)
cran: quantreg
Quantile Regression
Papers that mentioned: 154
Very Likely Science (93)
pypi: Generator
Generator: generators for Django
Papers that mentioned: 153
Very Likely Science (65)
pypi: EVM
The Extreme Value Machine
Papers that mentioned: 152
Very Likely Science (65)
pypi: LoRaWAN
Implementation of the LoRaWAN intended to connect to the Things Network Stack (V2-V3)
Papers that mentioned: 152
Very Likely Science (100)
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
Very Likely Science (100)
cran: DescTools
Tools for Descriptive Statistics
Papers that mentioned: 152
Very Likely Science (91)
pypi: Swarm
Swarm is a strategy rouge-like space simulator game written with `pygame/python3`.
Papers that mentioned: 151
Likely Science (40)
bioconductor: STAN
The Genomic STate ANnotation Package
Papers that mentioned: 150
Very Likely Science (90)
cran: R2WinBUGS
Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
Papers that mentioned: 150
Very Likely Science (75)
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
Very Likely Science (100)
cran: rcompanion
Functions to Support Extension Education Program Evaluation
Papers that mentioned: 149
Very Likely Science (83)
pypi: Elite
A lightweight module for elliptic-curve security schemes.
Papers that mentioned: 149
Very Likely Science (65)
cran: pgirmess
Spatial Analysis and Data Mining for Field Ecologists
Papers that mentioned: 148
Very Likely Science (85)
cran: MCID
Estimating the Minimal Clinically Important Difference
Papers that mentioned: 148
Very Likely Science (93)
cran: DES
Discrete Event Simulation
Papers that mentioned: 147
Very Likely Science (85)
pypi: Assembly
Assembly is a pythonic object-oriented, mid stack, batteries included framework built on Flask, that adds structure to your Flask application, and group your routes by class.Assembly allows developers to build web applications in much the same way they would build any other object-oriented Python program.Assembly Makes Flask Great Again!
Papers that mentioned: 147
Very Likely Science (65)
cran: forestplot
Advanced Forest Plot Using 'grid' Graphics
Papers that mentioned: 146
Very Likely Science (85)
bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
Very Likely Science (100)
pypi: CD
A simple printer of nester lists
Papers that mentioned: 146
Very Likely Science (65)
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
Very Likely Science (76)
bioconductor: RnBeads
RnBeads
Papers that mentioned: 145
Very Likely Science (90)
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Papers that mentioned: 144
Very Likely Science (100)
bioconductor: pathview
a tool set for pathway based data integration and visualization
Papers that mentioned: 144
Very Likely Science (100)
cran: activPAL
Advanced Processing and Chart Generation from activPAL Events Files
Papers that mentioned: 144
Very Likely Science (75)
cran: rgeos
Interface to Geometry Engine - Open Source ('GEOS')
Papers that mentioned: 144
Very Likely Science (75)
cran: boot
Bootstrap Functions (Originally by Angelo Canty for S)
Papers that mentioned: 143
Very Likely Science (83)
pypi: boot
VHDL simulator and synthesis tool
Papers that mentioned: 143
Very Likely Science (65)
cran: randomForestSRC
Fast Unified Random Forests for Survival, Regression, and Classification (RF-SRC)
Papers that mentioned: 143
Very Likely Science (85)
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experiments
Papers that mentioned: 142
Very Likely Science (75)
cran: keras
R Interface to 'Keras'
Papers that mentioned: 141
Very Likely Science (100)
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
Very Likely Science (90)
pypi: CHAID
A CHAID tree building algorithm
Papers that mentioned: 141
Very Likely Science (90)
pypi: keras
Deep learning for humans.
Papers that mentioned: 141
Very Likely Science (90)
cran: Eagle
Multiple Locus Association Mapping on a Genome-Wide Scale
Papers that mentioned: 140
Very Likely Science (75)
cran: readxl
Read Excel Files
Papers that mentioned: 139
Very Likely Science (100)
bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
Papers that mentioned: 139
Very Likely Science (100)
pypi: workbench
A scalable framework for security research and development teams.
Papers that mentioned: 139
Very Likely Science (75)
bioconductor: LEA
LEA: an R package for Landscape and Ecological Association Studies
Papers that mentioned: 139
Very Likely Science (100)
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
Very Likely Science (90)