cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1111/pbi.13299

Learning from methylomes: epigenomic correlates ofPopulus balsamiferatraits based on deep learning models of natural DNA methylation
Cited by: 9
Author(s): Marc J. Champigny, Faride Unda, Oleksandr Skyba, Raju Soolanayakanahally, Shawn D. Mansfield, Malcolm M. Campbell
Software Mentions: 10
Published: over 6 years ago

10.3389/fmicb.2019.02476

Characterization of the Mycobiome of the Seagrass, Zostera marina, Reveals Putative Associations With Marine Chytrids
Cited by: 29
Author(s): Cassandra L. Ettinger, Jonathan A. Eisen
Software Mentions: 10
Published: over 6 years ago

10.3389/fmicb.2021.634503

Cottonseed Press Cake as a Potential Diet for Industrially Farmed Black Soldier Fly Larvae Triggers Adaptations of Their Bacterial and Fungal Gut Microbiota
Cited by: 26
Author(s): Dorothee Tegtmeier, Sabine Hurka, Patrick Klüber, Karina Brinkrolf, Philipp Heise, Andreas Vilcinskas
Software Mentions: 10
Published: about 5 years ago

10.1038/s42003-019-0646-5

Histone acetylation orchestrates wound-induced transcriptional activation and cellular reprogramming in Arabidopsis
Cited by: 59
Author(s): Bart Rymen, Ayako Kawamura, Alice Lambolez, Soichi Inagaki, Arika Takebayashi, Akira Iwase, Yuki Sakamoto, Kaori Sako, David S. Favero, Momoko Ikeuchi, Takamasa Suzuki, Masanori Seki, Tetsuji Kakutani, François Roudier, Keiko Sugimoto
Software Mentions: 10
Published: over 6 years ago

10.3389/fmicb.2021.706214

Dietary Exposure of Pacific Oyster (Crassostrea gigas) Larvae to Compromised Microalgae Results in Impaired Fitness and Microbiome Shift
Cited by: 5
Author(s): Julien Vignier, Olivier Laroche, Anne Rolton, Pandora Wadsworth, K. Kumanan, Branwen Trochel, Xavier Pochon, Nathan King
Software Mentions: 10
Published: over 4 years ago

10.1186/s40462-019-0175-3

Exploration during early life: distribution, habitat and orientation preferences in juvenile king penguins
Cited by: 14
Author(s): Florian Orgeret, Clara Péron, Manfred R. Enstipp, Karine Delord, Henri Weimerskirch, CA Bost
Software Mentions: 10
Published: over 6 years ago

10.1038/s42003-020-1087-x

Combining host-derived biomarkers with patient characteristics improves signature performance in predicting tuberculosis treatment outcomes
Cited by: 12
Author(s): Dhanasekaran Sivakumaran, Synne Jenum, Mário Vaz, Sumithra Selvam, Tom H. M. Ottenhoff, Mariëlle C. Haks, Stephanus T. Malherbe, Nancy Devlin, Christian Ritz, Harleen M. S. Grewal
Software Mentions: 10
Published: almost 6 years ago

10.1371/journal.pone.0185171

Interactions affect hyphal growth and enzyme profiles in combinations of coniferous wood-decaying fungi of Agaricomycetes
Cited by: 29
Author(s): Tuulia Mali, Jaana Kuuskeri, Firoz Shah, Taina Lundell
Software Mentions: 10
Published: over 8 years ago

10.1097/MD.0000000000026068

MiRNA-based model for predicting the TMB level in colon adenocarcinoma based on a LASSO logistic regression method
Cited by: 1
Author(s): Zhengtian Li, Lingling Jiang, Rong Zhao, Jun Huang, Weibo Yang, Zhenpei Wen, Bo Zhang, Gang Du
Software Mentions: 10
Published: almost 5 years ago

10.7554/eLife.43257

Beta-catenin signaling regulates barrier-specific gene expression in circumventricular organ and ocular vasculatures
Cited by: 65
Author(s): Yanshu Wang, Mark F Sabbagh, Xiaowu Gu, Amir Rattner, John Williams, Jeremy Nathans
Software Mentions: 10
Published: about 7 years ago

10.1038/s41598-019-45491-7

The future of coffee and cocoa agroforestry in a warmer Mesoamerica
Cited by: 58
Author(s): Kauê de Sousa, Maarten van Zonneveld, Milena Holmgren, Roeland Kindt, Jenny C. Ordóñez
Software Mentions: 10
Published: almost 7 years ago

10.3389/fimmu.2021.722860

Transcriptional Changes in Regulatory T Cells From Patients With Autoimmune Polyendocrine Syndrome Type 1 Suggest Functional Impairment of Lipid Metabolism and Gut Homing
Cited by: 1
Author(s): A Berger, Eirik Bratland, Thea Sjøgren, Marte Heimli, Torgeir Tyssedal, Øyvind Bruserud, Stefan Johansson, Eystein S. Husebye, Bergithe E. Oftedal, Anette Susanne Bøe Wolff
Software Mentions: 10
Published: over 4 years ago

10.3389/fmicb.2021.642543

Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites
Cited by: 6
Author(s): Jorge Doña, Stephany Virrueta Herrera, Tommi Nyman, Mervi Kunnasranta, Kevin P. Johnson
Software Mentions: 10
Published: about 5 years ago

10.1186/s12864-015-2250-5

Leveraging global gene expression patterns to predict expression of unmeasured genes
Cited by: 3
Author(s): James Rudd, René A. Zelaya, Eugene Demidenko, Ellen L. Goode, Casey S. Greene, Jennifer A. Doherty
Software Mentions: 10
Published: over 10 years ago

10.1038/s42003-021-02407-4

Social familiarity improves fast-start escape performance in schooling fish
Cited by: 8
Author(s): Lauren E. Nadler, Mark I. McCormick, Jacob L. Johansen, Paolo Domenici
Software Mentions: 10
Published: over 4 years ago

10.1038/s42003-021-02137-7

The lexicon of antimicrobial peptides: a complete set of arginine and tryptophan sequences
Cited by: 33
Author(s): Sam Clark, Thomas A. Jowitt, Lynda K. Harris, Christopher G. Knight, Curtis B. Dobson
Software Mentions: 10
Published: almost 5 years ago

10.3389/fgene.2020.00260

IntAssoPlot: An R Package for Integrated Visualization of Genome-Wide Association Study Results With Gene Structure and Linkage Disequilibrium Matrix
Cited by: 20
Author(s): Fengyu He, Shuangcheng Ding, Hongwei Wang, Feng Qin
Software Mentions: 10
Published: about 6 years ago

10.3389/fmicb.2019.01702

Experimental Inoculation of Coral Recruits With Marine Bacteria Indicates Scope for Microbiome Manipulation in Acropora tenuis and Platygyra daedalea
Cited by: 47
Author(s): Katarina Damjanovic, Madeleine Jh van Oppen, Patricia Menéndez, Linda L. Blackall
Software Mentions: 10
Published: over 6 years ago

10.1186/s40360-021-00505-x

Causal inference multiple imputation investigation of the impact of cannabinoids and other substances on ethnic differentials in US testicular cancer incidence
Cited by: 26
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 10
Published: almost 5 years ago

10.1371/journal.pone.0191601

Highly multiplexed single-cell quantitative PCR
Cited by: 12
Author(s): Michael VanInsberghe, Hans Zahn, Alexander D. White, Oleh I. Petriv, Carl L. Hansen
Software Mentions: 10
Published: about 8 years ago

10.1371/journal.pone.0209331

Rethomics: An R framework to analyse high-throughput behavioural data
Cited by: 66
Author(s): Quentin Geissmann, Luis García Rodríguez, Esteban J. Beckwith, Giorgio F. Gilestro
Software Mentions: 10
Published: over 7 years ago

10.1534/g3.120.401174

Sirt4 Modulates Oxidative Metabolism and Sensitivity to Rapamycin Through Species-Dependent Phenotypes in Drosophila mtDNA Haplotypes
Cited by: 3
Author(s): Richard Sejour, Roger A. Sanguino, Monika Mikolajczak, Walishah Ahmadi, Eugenia Villa-Cuesta
Software Mentions: 10
Published: almost 6 years ago

10.3389/fmicb.2021.685263

Exploring the Potential of Micrococcus luteus Culture Supernatant With Resuscitation-Promoting Factor for Enhancing the Culturability of Soil Bacteria
Cited by: 9
Author(s): Marco Antonio Lopez Marin, Michal Strejcek, Petra Junková, Jáchym Šuman, Jiří Šantrůček, Ondřej Uhlík
Software Mentions: 10
Published: almost 5 years ago

10.1186/s42523-021-00094-4

Host phylogeny and host ecology structure the mammalian gut microbiota at different taxonomic scales
Cited by: 23
Author(s): Connie A. Rojas, Santiago Ramírez‐Barahona, Kay E. Holekamp, Kevin R. Theis
Software Mentions: 10
Published: almost 5 years ago

10.1098/rsos.171218

Tongues on the EDGE: language preservation priorities based on threat and lexical distinctiveness
Cited by: 2
Author(s): Nicolas Perrault, Maxwell J. Farrell, T. Jonathan Davies
Software Mentions: 10
Published: over 8 years ago

10.1093/plankt/fbaa017

Rapid succession drives spring community dynamics of small protists at Helgoland Roads, North Sea
Cited by: 11
Author(s): Laura Käse, Alexandra Kraberg, Katja Metfies, Stefan Neuhaus, Pim Sprong, Bernhard M. Fuchs, Maarten Boersma, Karen Helen Wiltshire
Software Mentions: 10
Published: almost 6 years ago

10.3389/fgene.2021.682475

Genomic and Chemical Diversity of Commercially Available High-CBD Industrial Hemp Accessions
Cited by: 10
Author(s): Matthew Johnson, Jason Wallace
Software Mentions: 10
Published: almost 5 years ago

10.7554/eLife.62250

Age-related changes in polycomb gene regulation disrupt lineage fidelity in intestinal stem cells
Cited by: 11
Author(s): Helen M Tauc, Imilce A. Rodriguez‐Fernandez, Jason A. Hackney, Michał Pawlak, Tal Oron, Jerome Korzelius, Hagar F. Moussa, Subhra Chaudhuri, Zora Modrušan, Bruce A Edgar, Heinrich Jasper
Software Mentions: 10
Published: about 5 years ago

10.1001/jamanetworkopen.2021.14162

Association of Copy Number Variation Signature and Survival in Patients With Serous Ovarian Cancer
Cited by: 14
Author(s): Ryon P. Graf, Ramez N. Eskander, Leo Brueggeman, Dwayne G. Stupack
Software Mentions: 10
Published: almost 5 years ago

10.1098/rsos.191333

Now or never: noticing occurs early in sustained inattentional blindness
Cited by: 4
Author(s): Katherine Wood, Daniel J. Simons
Software Mentions: 10
Published: over 6 years ago

10.1186/s12918-015-0169-8

Increased robustness of early embryogenesis through collective decision-making by key transcription factors
Cited by: 8
Author(s): Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi
Software Mentions: 10
Published: almost 11 years ago

10.1371/journal.pgen.1008831

Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens
Cited by: 18
Author(s): Trieu-Duc Vu, Yoshiaki Iwasaki, Shuji Shigenobu, Akiko Maruko, Koichiro Oshima, Erica Iioka, Chao Li Huang, Takashi Abe, Satoshi Tamaki, Yi-Sheng Lin, Chih Kuan Chen, Mei-Yeh Jade Lu, Masaru Hojo, Hao Ven Wang, Shun Fen Tzeng, Hao Huang, Akio Kanai, Takashi Gojobori, Tzen‐Yuh Chiang, Han Sun, Wen-Hsiung Li, Norihiro Okada
Software Mentions: 10
Published: almost 6 years ago

10.18632/aging.102434

Development and validation of a metastasis-associated prognostic signature based on single-cell RNA-seq in clear cell renal cell carcinoma
Cited by: 28
Author(s): Chuanjie Zhang, Hongchao He, Xin Hu, Ao Liu, Da Huang, Yu Xu, Lu Chen, Danfeng Xu
Software Mentions: 10
Published: over 6 years ago

10.7717/peerj.8027

Limited initial impacts of biomass harvesting on composition of wood-inhabiting fungi within residual stumps
Cited by: 0
Author(s): Cédric Boué, Tonia DeBellis, Lisa Venier, Timothy T. Work, Steven W. Kembel
Software Mentions: 10
Published: over 6 years ago

10.1093/iob/obaa024

The Balance Hypothesis for the Avian Lumbosacral Organ and an Exploration of Its Morphological Variation
Cited by: 11
Author(s): Kathryn E Stanchak, C. French, David J. Perkel, Bingni W. Brunton
Software Mentions: 10
Published: over 6 years ago

10.1186/s13059-019-1647-x

Dynamic inosinome profiles reveal novel patient stratification and gender-specific differences in glioblastoma
Cited by: 48
Author(s): Domenico Alessandro Silvestris, Ernesto Picardi, Valeriana Cesarini, Bruno Fosso, Nicolò Mangraviti, Luca Massimi, Maurizio Martini, Graziano Pesole, Franco Locatelli, Angela Gallo
Software Mentions: 10
Published: about 7 years ago

10.1038/s41598-021-88702-w

Shorter headed dogs, visually cooperative breeds, younger and playful dogs form eye contact faster with an unfamiliar human
Cited by: 23
Author(s): Zsófia Bognár, Dóra Szabó, Alexandra Deés, Enikő Kubinyi
Software Mentions: 10
Published: almost 5 years ago

10.1155/2021/7404927

A Comprehensive Multiomics Analysis Identified Ubiquilin 4 as a Promising Prognostic Biomarker of Immune-Related Therapy in Pan-Cancer
Cited by: 4
Author(s): Jie Li, Ye Tong, Zhi Wang, Yi Liu, Xiaofeng Dai, Yubing Zhu
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-020-78228-y

Gastrointestinal adenocarcinoma analysis identifies promoter methylation-based cancer subtypes and signatures
Cited by: 7
Author(s): Renshen Xiang, Tao Fu
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-020-76103-4

Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity
Cited by: 3
Author(s): Dèdéou Apocalypse Tchokponhoué, Enoch G. Achigan‐Dako, Sognigbé N’Danikou, Daniel Nyadanu, Rémi Kahane, Jacob S Houéto, V.N. Fassinou Hotegni, Alfred Odindo, Julia Sibiya
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-019-42533-y

MeshMonk: Open-source large-scale intensive 3D phenotyping
Cited by: 78
Author(s): Julie D. White, Alejandra Ortega-Castrillón, Harold Matthews, Arslan Zaidi, Omid Ekrami, Jonatan Snyders, Yi Fan, Tony Penington, Stefan Van Dongen, Mark D. Shriver, Peter Claes
Software Mentions: 10
Published: about 7 years ago

10.3390/ijms20061510

Placenta Transcriptome Profiling in Intrauterine Growth Restriction (IUGR)
Cited by: 48
Author(s): Marta Majewska, Aleksandra Lipka, Łukasz Paukszto, J Jastrzebski, Karol Szeszko, Marek Gowkielewicz, Ewa Lepiarczyk, Marcin Jóźwik, Mariusz Majewski
Software Mentions: 10
Published: about 7 years ago

10.1155/2021/6365459

Identification of a Pyroptosis-Related Gene Signature for Prediction of Overall Survival in Lung Adenocarcinoma
Cited by: 14
Author(s): Donghai Zheng, Lv Bian, Minglang Wang, Luoqing Wang, Yilian Wang
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-021-84545-7

Quantitative molecular detection of larval Atlantic herring (Clupea harengus) in stomach contents of Atlantic mackerel (Scomber scombrus) marks regions of predation pressure
Cited by: 11
Author(s): Bridie J. M. Allan, Jessica L. Ray, Maik Tiedemann, Valeriya Komyakova, Frode Vikebø, Katrine Sandnes Skaar, Martina Stiasny, Arild Folkvord, Richard Nash, Erling Kåre Stenevik, Olav Sigurd Kjesbu
Software Mentions: 10
Published: about 5 years ago

10.1038/s41598-018-32681-y

Medicinal value of sunflower pollen against bee pathogens
Cited by: 77
Author(s): Jonathan J. Giacomini, Jessica Leslie, David R. Tarpy, Evan C. Palmer‐Young, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 10
Published: over 7 years ago

10.1042/BSR20201734

Identification prognosis-associated immune genes in colon adenocarcinoma
Cited by: 16
Author(s): Yifei Miao, Jiangtao Wang, Xueping Ma, Yuan Yang, Denghai Mi
Software Mentions: 10
Published: over 5 years ago

10.3390/ijerph17218164

Differences in the Estimation of Wildfire-Associated Air Pollution by Satellite Mapping of Smoke Plumes and Ground-Level Monitoring
Cited by: 9
Author(s): Raj P. Fadadu, John R. Balmes, Stephanie M. Holm
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-017-09303-0

The impact of immigration on microbial community composition in full-scale anaerobic digesters
Cited by: 111
Author(s): Rasmus Hansen Kirkegaard, Simon Jon McIlroy, Jannie Munk Kristensen, Marta Nierychlo, Søren Michael Karst, Morten Simonsen Dueholm, Mads Albertsen, Per Halkjær Nielsen
Software Mentions: 10
Published: over 8 years ago

10.1038/s41598-020-62453-6

Patterns of Rift Valley fever virus seropositivity in domestic ruminants in central South Africa four years after a large outbreak
Cited by: 19
Author(s): Yusuf B. Ngoshe, Alida Avenant, Melinda K. Rostal, William B. Karesh, Janusz T. Pawęska, Whitney Bagge, Petrus Jansen van Vuren, Alan C. Kemp, Claudia Cordel, Veerle Msimang, Peter N. Thompson
Software Mentions: 10
Published: about 6 years ago

10.1038/s41598-017-05505-8

Machine Learning Algorithms for Risk Prediction of Severe Hand-Foot-Mouth Disease in Children
Cited by: 15
Author(s): Bin Zhang, Xiang Wan, Fu Ouyang, Yu Dong, Dehui Luo, Jing Liu, Long Liang, Wen Bo Chen, Xiao Luo, Xiao Mo, Lu Zhang, Wen Hui Huang, Shu Fang Pei, Bao Liang Guo, Chun Liang, Long Zhou, Shui Xing Zhang
Software Mentions: 10
Published: almost 9 years ago

10.1002/bjs.10203

Multicentre prospective cohort study of body mass index and postoperative complications following gastrointestinal surgery
Cited by: 62
Author(s): T M Drake, Dmitri Nepogodiev, Stephen J. Chapman, James C Glasbey, Chetan Khatri, Chia Yew Kong, Henry Claireaux, M F Bath, Midhun Mohan, Lisa McNamee, Michael E. Kelly, Harriet Mitchell, J Edward Fitzgerald, Ewen M Harrison, Aneel Bhangu, Henry Claireaux, Irini M. Antoniou, Richard H. Dean, Natalie A. Davies, Shaun Trecarten, Ian Henderson, Charlotte Holmes, Joanne Wylie, R H Shuttleworth, Anurag Jindal, F Hughes, Pishoy Gouda, Lisa McNamee, Robert Fleck, Michael Hanrahan, Priyadarssini Karunakaran, J H Chen, Mark Sykes, Rajiv K. Sethi, S. Suresh, Panna Patel, M Patel, Rick Varma, Jameel Mushtaq, Buket Gundogan, William Bolton, Midhun Mohan, T Khan, Joshua Burke, R Morley, Nicolò Favero, R. Adams, Vanushia Thirumal, Ewan D. Kennedy, Kenneth Ong, Yulin Tan, Joseph Gabriel, Ali Bakhsh, Jillian Low, Ahmet Levent Yener, Vlad Paraoan, Ryan Preece, Thomas Tilston, Elspeth Cumber, S Dean, Talisa Ross, Eleanor McCance, H. Amin, L. Satterthwaite, Keiran Clement, Robert Gratton, Edward David Mills, Seehui Chiu, Guo Dung Hung, N M Rafiq, John D. Hayes, K Robertson, K Dynes, Han-Sheng Huang, Shershah Assadullah, Joseph W. Duncumb, Richard Moon, Stephanie Poo, J.K. Mehta, K Joshi, Rory Callan, Jonathan Norris, Nicholas Chilvers, Harry Keevil, P Jull, Shweta Mallick, D. Elf, L. M. Carr, C. Player, Ellen C Barton, Aurélie Martin, S.G. Ratu, Elizabeth Roberts, Philippe Phan, A Dyal, Joanne Rogers, Anne Henson, Neil Reid, Dermot Burke, G. Culleton, Sarah D. Lynne, Dermot Burke, Sufyan Mansoor, Caitlin W. Brennan, R. Blessed, Caroline L. Holloway, Arnold D. Hill, Thomas Goldsmith, Sharon Mackin, S Kim, Evelina Woin, Gregory A. Brent, Juli Coffin, Oliver J. Ziff, ZD Momoh, R. K. Debenham, Malik Irfan Ahmed, Cissy Yong, Jonathan Wan, Hannah Charlotte Copley, Pritish Raut, Faraz Chaudhry, R H Shuttleworth, G Nixon, Courtney Dorman, Ryan Choon Kiat Tan, S Kanabar, N. Canning, M. Dolaghan, Nicole S. Bell, Mary McMenamin, Ashok Chhabra, Kathryn Duke, Lindsay C. Turner, Tejal Patel, L S Chew, Mehdi Ali Mirza, Surabhika Lunawat, Babatunde Oremule, Nicholas T. Ward, M Khan, E. Tian Tan, David Roderick Maclennan, Richard McGregor, Elizabeth Chisholm, E J Griffin, Louise Bell, Belinda Hughes, J. Davies, Hafizul Haq, Hussien Ahmed, N. Ungcharoen, C. Whacha, R. Thethi, Rachel Markham, A H Y Lee, ER Batt, Nicholas Bullock, C.T. Francescon, J. Davies, Nusrat Shafiq, Jiashi Zhao, Sayinthen Vivekanantham, Ishani Barai, Jessica L. Allen, Dominic C Marshall, Charlotte McIntyre, Holly Wilson, Anita Ashton, C. Lek, Nebil Behar, M. Davis-Hall, N. Seneviratne, S Kim, Loïc Estève, Mert Sirakaya, S Ali, Scott D. Pope, Jaimo Ahn, Anna Craig-Mcquaide, W.A. Gatfield, Sharon E Leong, A.M. Demetri, Anne Kerr, Clare M. Rees, Jane Loveday, S Liu, Maheshi P C Wijesekera, Dipen M. Maru, Mark Attalla, Nicholas A. Smith, David Esteban Brown, P. Sritharan, Apar Shah, V. Charavanamuttu, G. Heppenstall-Harris, Kelvin K. Ng, T. Raghvani, Nick Rajan, K. Hulley, Nick Moody, Marli Williams, Arthur Cotton, Milad Sharifpour, Kaung Lwin, Melissa Bright, Abhishek Chitnis, Mohammed Abdel-Hadi, Akuilina Semana, Franklin G. Morgan, Rebecca Reid, Jane Dickson, Lorinda Anderson, Ronan McMullan, Jane Dickson, N Ahern, A Ahmad Asmadi, Lorinda Anderson, Jiabin Xuan, Lauren Crozier, Stephen McAleer, David Lees, AT Adebayo, Mautushi Das, Alexander Amphlett, A. Al-Robeye, Alice Valli, Jessi Khangura, A. Winarski, Ahmed Ali, Jessi Khangura, Helen Woodward, C Gouldthrope, Megan C. Turner, K Sasapu, Michael Tonkins, Jonathan Wild, Michael J. Robinson, J. Hardie, R. Heminway, Ruth Narramore, N. Ramjeeawon, A. D. Hibberd, Forrest Winslow, W Ho, Bradford Chong, Khong Hee Lim, Samuel B. Ho, J.A. Crewdson, S. Singagireson, Neeraj Kalra, Foteini Stefania Koumpa, H. I. Jhala, Wai Cheong Soon, Monil Karia, Michael Greshan Rasiah, Diamantis Xylas, Huburt Gilbert, M. Sundar-Singh, Jonathan Wills, Jameel Mushtaq, Sobia Akhtar, S. Patel, Liu Hu, Charlotte Brathwaite‐Shirley, H Nayee, Oreekha Amin, Tarun Rangan, E Turner, Catherine H McCrann, Rowan Forbes Shepherd, N Patel, J. Prest-Smith, Eric Y Auyoung, A. Murtaza, Amy Coates, O. Prys-Jones, Martin King, Stuart Gaffney, Charlotte Dewdney, I. Nehikhare, Jessica A. Lavery, John Bassett, Kirsty Davies, Kasim Ahmad, A Collins, Meghan Acres, Christine Egerton, T Khan, Ka Ho Cheng, X Chen, Nicholas Chan, A. Sheldon, S. Khan, J. Empey, Emily Ingram, Ali Raza Malik, Marianne Johnstone, R. Goodier, Jigar Shah, Julian Giles, Julie Sanders, Stewart McLure, Sridhar E. Pal, A. Rangedara, A Baker, C.A. Asbjoernsen, C. Girling, Lewis D Gray, L. Gauntlett, C Joyner, Sajid Qureshi, S Dean, Y.P. Mogan, James Ng, Aruna Kumar, J H Park, David Chi Hau Tan, K.P. Choo, Kausalya Raman, P. Buakuma, Chunhong Xiao, S. Govinden, Olof Thompson, M.A. Charalambos, Elliot John Brown, Rickesh Bharat Karsan, Tara Dogra, Laetitia Bullman, Pamela Dawson, Arthur L. Frank, Hèla Ben Abid, Li-Chen Tung, Umer Qureshi, A. Tahmina, Bruce Matthews, R. Harris, A. O'Connor, K. Mazan, Sundas Iqbal, Sophie Stanger, J. Thompson, Jacqueline A. Sullivan, E. Uppal, Ann Macaskill, F.A. Bamgbose, Christina Neophytou, Ashley Carroll, C.W. Rookes, Uttaran Datta, Amrita Dhutia, S Rashid, Nagm Eldin Abu Elnga Ahmed, Terence Lo, Shivam Bhanderi, Christopher Blore, S Ahmed, H. J. Shaheen, S Abburu, S. Majid, Zainab Fadhil Abbas, Sutopa Talukdar, S Ahmed, Laura Burney, Jamie Patel, O Al-Obaedi, Allison Roberts, O Al-Obaedi, Sophia Mahboob, Bhagwan D. Singh, Sangini S. Sheth, Priyesh Karia, A Prabhudesai, Kelvin Kow, Kantida Koysombat, S Wang, Paul J. Morrison, Y. Maheswaran, Philip Keane, Phillip Correia Copley, Oliver Brewster, Guan-Jie Xu, Phillip Harries, Carmel Wall, Alia Al-Mousawi, S. Bonsu, Pedro Cunha, Thomas Ward, Jerry Paul, K. Nadanakumaran, Salim Tayeh, Thomas Ward, H. Holyoak, Jéssica Remédios, K Theodoropoulou, Thomas Ward, A. Luhishi, Louis Jacob, Fang Long, Andrew Atayi, Safdar Sarwar, Olive Parker, Jessica Harvey, Heather Ross, Ritika Rampal, George Thomas, Piyush Vanmali, Catherine C. McGowan, John C. Stein, Vaila Robertson, L. Carthew, Vannesa Yue May Teng, J Fong, Anne Street, Clare Thakker, Derek O’Reilly, Mauro Bravo, Aline Cecília Pizzolato, Haseeb Anwar Khokhar, M. J. Ryan, Lindsay Cheskes, Richard D. Carr, Abdelmonim Salih, S. Bassiony, R. C. F. Yuen, David Chrastek, Hugh O׳Sullivan, Adaugo Amajuoyi, A Wang, O. Sitta, J. Wye, Mubasher A Qamar, C. Y. D. Major, Anjali Kaushal, Catrin Morgan, Maurizio Petrarca, R Allot, Kamlesh Verma, Shoma Dutt, R Allot, Chrissie Chilima, S Peroos, R Allot, Sumitro Kosasih, Hyung-Min Chin, L. Ashken, Rupert Pearse, Robert O'Loughlin, Arathi Menon, Kavindra Singh, Joel Norton, Rebecca Sagar, N. Jathanna, Lincoln Rothwell, Nicholas Watson, Floyd E. Harding, Pierre Dubé, Hassan Khalid, N Punjabi, Markus Sagmeister, Paul Gill, SM Hossain Shahid, Sarah Hudson-Phillips, D. George, J. Scott Ashwood, Thomas Lewis, Mahesh Shanker Dhar, P Sangal, I A Rhema, Dipak Kotecha, Richard H. Dean, Zeeshan Afzal, J.A. Syeed, Esha Prakash, Priya Jalota, Richard H. Dean, Jonathan Blair Thomas Herron, Lawrence M Kimani, A. Delport, Ayushi Shukla, Vani Agarwal, S R Raja Parthiban, Hena Thakur, W Cymes, S Rinkoff, Jennifer Turnbull, Muhammad Hayat, Sarah Darr, UA Khan, Jieqi Lim, Andrew Higgins, Gokul Lakshmipathy, Beniamino Forte, E. Canning, A. Jaitley, Jeffrey P. Lamont, Ethan Toner, Ali Ghaffar, Mark McDowell, Dominique Salmon, Pishoy Gouda, Orla O’Carroll, A Khan, Michael E. Kelly, Katherine Clesham, Cynthia S. Palmer, Rachel Lyons, Michael E. Kelly, Andrew M. Bell, Robin Chin, Ronan Waldron, Michael E. Kelly, Alan S. Trimble, Shanice Cox, Umair Ashfaq, Jill Campbell, Rachel Holliday, George P. McCabe, Frances Morris, R. Priestland, S Dean, Olivia Vernon, A. Ledsam, Rachel Vaughan, Diana Lim, Zoe Bakewell, Rebecca Hughes, R. Koshy, Hunter Jackson, P Narayan, Amy Cardwell, C.L. Jubainville, Tahera Arif, Lucy Elliott, Vidushi Gupta, Tahera Arif, Gayathri Bhaskaran, Kavindra Singh, Adenike Odeleye, Fiza Ahmed, Raahil Shah, Adenike Odeleye, Joe Pickard, Yasir Suleman, Adenike Odeleye, Alexander S North, Liusaidh McClymont, N Hussain, I. Ibrahim, Guat Shi Ng, V. Wai-Sun Wong, Alison Lim, L. Harris, T. Tharmachandirar, Devender Mittapalli, Vimal Patel, Midhat Lakhani, Natalie A. Davies, H.Z. Bazeer, Vishal Narwani, Kulmeet Sandhu, Laura R. Wingfield, Sarah Gentry, Helena Adjei, Muhammad Iqbal Bhatti, Lester Braganza, James R. Barnes, S. Mistry, G. Chillarge, Samantha Stokes, J. Cleere, S. Wadanamby, A.M. Bucko, James Meek, Naomi Boxall, Emily Heywood, Joanne Wiltshire, C. Toh, Alex Ward, Badrun Shurovi, T M Drake, Dillon Horth, Brij Patel, Baqar Ali, Todd Spencer, T. Axelson, L Kretzmer, C. Chhina, C Anandarajah, T. Fautz, Carolyn Horst, A.A. Thevathasan, Jason Ng, F. Hirst, Carole Brewer, Andrew Logan, Joseph Lockey, Paul Forrest, Nigel Keelty, Andrew Wood, Laurie Rigueros Springford, Pascale Avery, Therese Schulz, T.P. Bemand, Lara Howells, Hailey Collier, Apoorva Khajuria, Ravi Tharakan, Sarah Parsons, A M Buchan, Rachel McGalliard, John Mason, Olivia Cundy, N Li, Natalie Redgrave, Rgp Watson, Theodore Pezas, Y Dennis, Emma‐Tina Segall, Mansoor Hameed, Abigail Lynch, M. C. Chamberlain, F S Peck, Yan Ning Neo, George H. Russell, M Elseedawy, S Lee, Naomi Foster, Youn Soo, L. Puan, R Dennis, Harshita Goradia, A. Qureshi, Samah Ibrahim Omer Mohamed Osman Mohamed Osman, Thomas Reeves, L. Dinsmore, M Marsden, Qun Lü, T. Pitts-Tucker, Chris Dunn, Richard Walford, E. Jenny Heathcote, Robert C.G. Martin, Agamemnon Pericleous, K. Brzyska, Kern Reid, Marli Williams, Nick Wetherall, Eilish McAleer, D. Thomas, R S Kiff, C Gouldthrope, Stephanie Milne, M Holmes, Samantha Stokes, J Bartlett, J L ucas Carvalho, T Bloomfield, F. Tongo, Ronald Bremner, Yong Ning, B.A. Atraszkiewicz, A. Mehdi, Muhammad Rizwan Tahir, G.X.J. Sherliker, Anne Tear, Amita Pandey, A. Broyd, Hisham Omer, Martine Raphaël, W.W. Chaudhry, Shayan Shahidi, Ahmed Jawad, Charn Gill, Ingo Fisher, I. Adeleja, Ian Clark, G. Aidoo-Micah, Philip W. Stather, Gazbar Salam, Thomas E. Glover, Gavin Deas, N K Sim, R.D. Obute, William Wynell-Mayow, M S Sait, N. Mitha, G Bernier, Muhammad Bilal Siddiqui, Raghav Shaunak, Anuj Wali, Gavin Cuthbert, Roshni Bhudia, Elizabeth M. Webb, Sanjay Shah, Nabila Ansari, M. Thamara P. R. Perera, Neil E. Kelly, Ross McAllister, Guy Stanley, Colm Keane, Veeranna Shatkar, C. Maxwell‐Armstrong, LM Henderson, Natalie Maple, Roberto R. Manson, R. Adams, Elliot John Brown, Elisabeth Semple, Marcos Mills, Ahmed Daoub, A. Marsh, A. Ramnarine, J. Hartley, Marta Malaj, Paul Jewell, E.A. Whatling, Nadia Hitchen, M Chen, Brian K.P. Goh, Juliana Fern, Sophie Rogers, Laura Derbyshire, David Robertson, N Abuhussein, Praveena Deekonda, Amer Abid, Ali Bakhsh, Peter Harrison, L. Aildasani, Hannah Turley, Mohamed Sherif, Gargi Pandey, Joseph Filby, Andrew James Johnston, Éilish Burke, Mohamed Farah Yusuf Mohamud, Kajal Gohil, A Tsui, Rajdeep Singh, Shujing Jane Lim, Karen O’Sullivan, L.L. McKelvey, Stephen O’Neill, Helen Roberts, F S Brown, Yun Cao, Rory T Buckle, Yao Ren Liew, Samuel S.Y. Sii, Chiara Ventre, Christopher Graham, Teodora Filipescu, Abdallah Yousif, Reetika Dawar, Andrea Wright, Miriam Peters, Rebecca Varley, Sebastian Owczarek, Simon Hartley, Malak Nawaz Khan Khattak, Atif Iqbal, M Ali, B Durrani, Yajur Narang, George Bethell, Laura Horne, Raquel Pinto, Kathleen Nicholls, Ivan Kisyov, Hew D.T. Torrance, Panna Patel, M Patel, William English, Shan Lakhani, S. Ashraf, Mary L Venn, V. Elangovan, Zehra Kazmi, Joanna Brecher, Shyam Sukumar, Adnan Mastan, Alice Mortimer, Jennifer Parker, J Boyle, M Elkawafi, Jeffrey M. Beckett, Ajay Mohite, Aditya Narain, Eshan Mazumdar, A. Sreh, Amy Hague, Daniel H. Weinberg, Laura Fletcher, Malcolm Steel, Hannah Shufflebotham, Mariam Masood, Yash Sinha, H. Amin, C Jenvey, H. Kitt, Ruth Slade, Ashley Craig, Ciara Deall, Yash Sinha, Joseph Gabriel, T. Reakes, Jordan V. Chervenkoff, E Strange, Moira K O’Bryan, Charlotte Murkin, D Joshi, E Strange, Tara Bergara, S. Naqib, D. Wylam, E Strange, S. Scotcher, Christopher Hewitt, Michael Stoddart, Ashwin Kerai, Adam Joseph Trist, S. Cole, Cathryn Knight, Samuel Stevens, Graham Cooper, Rory Ingham, Judith Dobson, Joanne Wylie, A O'Kane, Jalal Moradzadeh, Allyson Duffy, C. Henderson, S. Ashraf, C. McLaughin, Toby Hoskins, R Reehal, Lucy R. Bookless, Ross McLean, Emily Stone, E. Wright, H Abdikadir, Charlotte Roberts, Olivia Spence, Mukunthan Srikantharajah, M Patel, Eduardo Montero Ruiz, J. H. Matthews, Elizabeth C. Gardner, Charlotte Roberts, E. Kelly Hester, Prasheena Naran, R Simpson, Meenu Minhas, Emily F. Cornish, SH Semnani, Djamila Rojoa, A Radotra, John Eraifej, K. Eparh, Daniel Smith, Bhavin Mistry, Siobhan Hickling, Aneel Bhangu, W. Din, C Liu, Pryankaran Mithrakumar, V. Mirdavoudi, Madeeha Rashid, Clare McGenity, O. Hussain, M Kadicheeni, Hannah Gardner, N. Anim-Addo, Jack C.H. Pearce, Alec Aslanyan, Chara Ntala, T. Sorah, J. Parkin, mohamad alizadeh, Andrew A. White, F. Edozie, J.H. Johnston, A.G. Abdul Kahar, V. Navayogaarajah, Brij Patel, D Carter, Parisa Khonsari, Andrea Burgess, Brij Patel, Chia Kong, Arachchige Ponweera, A. Cody, Yulin Tan, AYKC Ng, A. Croall, Catherine K. Allan, S Ng, V Raghuvir, Richard J. Telfer, Arran Greenhalgh, Caroline McKerr, Marie Alexandra Edison, Bhavin Patel, K L Dear, Myra Hardy, P. Williams, Shamira Hassan, Uzma Sajjad, Eoghan O’Neill, Sofia Jarjour Tavares Starling Lopes, Laura Healy, Norhadziana Jamal, S Tan, D. Lazenby, S.B. Husnoo, Simon Beecroft, T. Sarvanandan, Christina G. Weston, N Bassam, S. Rabinthiran, Umar Hayat, Lauren C. Ng, D. G. Varma, Mohamad Sukkari, Ayesa Mian, Amy Coates, Al Fazir Omar, J W Kim, Amy Coates, Jenardan Sellathurai, Javed Iqbal Mahmood, Casey L. O’Connell, Ruma Bose, Helen Heneghan, Peter Lalor, Jesse Matheson, C C Doherty, Caroline Cullen, David J. Cooper, Sophia Angelov, C. Drislane, Andrew C. Smith, A. Kreibich, Ebrahim Palkhi, Andrya J. Durr, Andrew Lotfallah, David Gold, Erin L. McKean, Andrya J. Durr, Al-Rehan Dhanji, Anilkumar Av, Amitabh Thacoor, Andrya J. Durr, Zohaib Siddiqui, S. Lim, Amand Piquet, Shelly Anderson, Anurag Jindal, Darren McCormack, Jayati Gulati, Arwa Ibrahim, Anurag Jindal, Scott Murray, Stewart Walsh, Anika L. McGrath, Paul Ziprin, Eddy Chua, Chong-yang Lou, Joseph R. Bloomer, Heidi Paine, Denise Osei-Kuffour, Carla White, A Szczap, Shyam Gokani, Kiran Klaus Patel, M.K. Malys, Anthony Reed, G.E. Torlot, Elspeth Cumber, Amynah Charania, Siddique Ahmad, Niraj Varma, Haider R. Cheema, L. Austreng, H. Petra, Muhammad Hamid Chaudhary, Menen Zegeye, Frances K. Cheung, Douglas Coffey, R. Heer, Sweta Singh, Emilie Seager, S Cumming, Rishi Suresh, Saurabh Verma, Imogen Ptacek, Adam Gwozdz, Tianqin Yang, Ayush Khetarpal, Syed Shumon, Teresa Fung, William Chun-yin Leung, P. C. Kwang, L S Chew, Wayren Loke, Alan J. Curran, Carlos Chan, Christine McGarrigle, Kunal Mohan, Sean P. Cullen, Enoch Wong, Conor Toale, D. Collins, Niamh Keane, B P Traynor, D. Shanahan, Angela Yan, Daniyal J. Jafree, C Topham, Stefan Mitrasinovic, Sharif Omara, Buket Gundogan, Gordon Bingham, Panagis M. Lykoudis, B.H. Miranda, Katharine Whitehurst, Geev Kumaran, Yadsan Devabalan, Humaira Aziz, M. Shoa, Shiva Dindyal, Jonathan Yates, Isaac A. Bernstein, Gurender Rattan, Jonathan Yates, R. Coulson, S. Stezaker, A Isaac, Menatalla Salem, Angela McBride, A Isaac, H. McFarlane, L. Yow, Jonathan Macdonald, Richard D. Bartlett, Sanchit Turaga, Ursula White, Wan Jane Liew, Nicholas H. Yim, Andrew Ang, Andrew Simpson, Daniel F. McAuley, Elaine Craig, Lorna Murphy, Peter Shepherd, Jim Kee, A Abdulmajid, Arlene E. Chung, Hunter Warwick, Alana Livesey, Patrick Holton, Mark D Theodoreson, S.L. Jenkin, J. Turner, Jonathan Entwisle, Stéphane Marchal, S. O'Connor, Harry Blege, Joanna M S Aithie, Leh Sabine, G.E. Stewart, S. Jackson, A. Kishore, C.M. Lankage, F Acquaah, Holly Joyce, Anurag Jindal, Kevin McKevitt, Calvin Coffey, Ahmad Fawaz, Katelyn Dolbec, Donnchadh O’Sullivan, J Geraghty, Eric Lim, Linda Burnes Bolton, Deirdre Fitzpatrick, Caitlin Robinson, T. Ramtoola, Sophie Collinson, L Grundy, Paul McEnhill, Gurvinder Singh Harbhajan Singh, Dafydd Loughran, David Golding, R.E. Keeling, Robert P. Williams, Robert Whitham, Sangeetha Yoganathan, R. Nachiappan, Richard Egan, Raisah Owasil, Marilyn L. Kwan, Aina He, Ruth Goh, Rahul Bhome, Holly Wilson, Penelope J. Teoh, Kabiru A. Raji, Thomas Reeves, Nimeshi Jayakody, J. Matthams, Julien Chong, S Tan, CW Luk, Robert Greig, Matthew Trail, George Charalambous, Vanushia Thirumal, Alistair Rocke, N Gardiner, F. A. Bulley, Nicole Warren, Emma Brennan, P. Fergurson, Rebekah Wilson, Heather Whittingham, Elliot John Brown, Rashmi Khanijau, Kejal Gandhi, Steve Morris, A Boulton, Nakul Chandan, A.E. Barthorpe, Ricardo Maamari, Shahneen Sandhu, Michael McCann, Lawrence M. Higgs, V Balian, Craig B. Reeder, Charles Diaper, V Balian, T. A. Sale, Hosam Fathy Ali, V Balian, Carolyn Archer, Anne Clarke, Joseph Heskin, P Hurst, Joel D. Farmer, Lauren O’Flynn, Lan Ðoàn, B A Shuker, G. Stott, N.A. Vithanage, Katie Hoban, P.N. Nesargikar, Helen Kennedy, Cathleen Grossart, Eunicia Tan, Chloe Roy, Pei Yin Sim, Kate Leslie, D P Y Sim, Mehtap Haktanır Abul, Neil Md Cody, Andrea Tay, E Woon, Saretta Sng, Jin Jiun Mah, John Robson, Eathar Shakweh, Victoria C. Wing, Harriet L. Mills, M M Li, Tina Barrow, Sathyan Balaji, Helen Jordan, C. Phillips, Hania Naveed, Shashivadan P. Hirani, A. Tai, Raguprakash Ratnakumaran, A. Sahathevan, Ahmed Mohamed Abdel Shafì, M. A. Seedat, Rupert Weaver, A Batho, R. Punj, Haran Selvachandran, Neel K. Bhatt, S. Botchey, Z. Khonat, Kiva Brennan, Kenneth Ong, Clare Morrison, Eimar Devlin, Anna Linton, Elizabeth Galloway, Susan McGarvie, Norma K.C. Ramsay, H D McRobbie, Harriet Whewell, William H. Dean, S. Nelaj, Mazin Eragat, Aseem Mishra, Tajinder Kane, Mohamed Zuhair, M. Wells, David Wilkinson, N P Woodcock, Elizabeth Sun, Nora Abdul Aziz, Momin Ghaffar
Software Mentions: 10
Published: almost 10 years ago

10.1128/mSphere.00743-20

Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull ( Chroicocephalus novaehollandiae ) Reveals the Acquisition of Multidrug Resistance Plasmids
Cited by: 17
Author(s): Max L. Cummins, Martina L. Sanderson-Smith, Peter Newton, Nicholas Carlile, David N. Phalen, Kimberly Maute, Leigh G. Monahan, Bethany J. Hoye, Steven P. Djordjevic
Software Mentions: 10
Published: over 5 years ago

10.1186/s13059-021-02484-y

Revisiting genetic artifacts on DNA methylation microarrays exposes novel biological implications
Cited by: 5
Author(s): Benjamin Planterose Jiménez, Manfred Kayser, Athina Vidaki
Software Mentions: 10
Published: over 4 years ago

10.1098/rspb.2021.0343

A multi-faceted comparative perspective on elevational beta-diversity: the patterns and their causes
Cited by: 17
Author(s): Yuanbao Du, Liqing Fan, Zaifu Xu, Zhixin Wen, Tianlong Cai, Anderson Feijó, Junhua Hu, Fumin Lei, Qisen Yang, Huijie Qiao
Software Mentions: 10
Published: almost 5 years ago

10.1186/s13059-018-1432-2

FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map
Cited by: 57
Author(s): Tom Aharon Hait, David Amar, Ron Shamir, Ran Elkon
Software Mentions: 10
Published: almost 8 years ago

10.7554/eLife.32073

Destructive disinfection of infected brood prevents systemic disease spread in ant colonies
Cited by: 69
Author(s): Christopher D. Pull, Line V. Ugelvig, Florian Wiesenhofer, Anna V. Grasse, Simon Tragust, Thomas Schmitt, Mark J. F. Brown, Sylvia Cremer
Software Mentions: 10
Published: over 8 years ago

10.7554/eLife.10421

Regulatory consequences of neuronal ELAV-like protein binding to coding and non-coding RNAs in human brain
Cited by: 115
Author(s): Claudia Scheckel, Elodie Drapeau, María A. Frías, Christopher Y. Park, John Fak, Ilana Zucker-Scharff, Yan Kou, Vahram Haroutunian, Avi Ma’ayan, Joseph D. Buxbaum, Robert B. Darnell
Software Mentions: 10
Published: about 10 years ago

10.7554/eLife.62210

Proteomic analysis of young and old mouse hematopoietic stem cells and their progenitors reveals post-transcriptional regulation in stem cells
Cited by: 18
Author(s): Balyn W. Zaro, Joseph J. Noh, Victoria L. Mascetti, János Demeter, Benson M. George, Monika Żukowska, Gunsagar S. Gulati, Rahul Sinha, Ryan A. Flynn, Allison Banuelos, Allison Zhang, Adam C. Wilkinson, Peter K. Jackson, Irving L. Weissman
Software Mentions: 10
Published: over 5 years ago

10.3390/v12111229

RNAseq of Deformed Wing Virus and Other Honey Bee-Associated Viruses in Eight Insect Taxa with or without Varroa Infestation
Cited by: 17
Author(s): Laura E. Brettell, Declan C. Schroeder, Stephen J. Martin
Software Mentions: 10
Published: over 5 years ago

10.7554/eLife.36187

Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
Cited by: 167
Author(s): Mark F Sabbagh, Jacob S Heng, Chongyuan Luo, Rosa Castanon, Joseph R. Nery, Amir Rattner, Loyal A. Goff, Joseph R. Ecker, Jeremy Nathans
Software Mentions: 10
Published: over 7 years ago

10.1093/bioinformatics/btv428

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
Cited by: 1,079
Author(s): Tal Galili
Software Mentions: 10
Published: over 10 years ago

10.3390/ijerph18168271

Cluster Analysis of Urban Acoustic Environments on Barcelona Sensor Network Data
Cited by: 10
Author(s): Antonio Pita, Francisco Javier Iglesias Rodríguez, Juan M. Navarro
Software Mentions: 10
Published: over 4 years ago

10.1007/s11250-021-02620-7

Risk factors associated with Ctenocephalides felis flea infestation of peri-urban goats: a neglected parasite in an under-appreciated host
Cited by: 4
Author(s): Julia Rose Dahm, Jordana Burdon Bailey, Robert F. Kelly, Patrick Chikungwa, Julius L.C. Chulu, Lívio Martins Costa, Emily June Freeman, Dagmar Mayer, Stella Mazeri, Neil Sargison
Software Mentions: 10
Published: about 5 years ago

10.2196/26412

Recursive partitioning vs computerized adaptive testing to reduce the burden of health assessment in cleft lip and/or palate: a comparative simulation study (Preprint)
Cited by: 1
Author(s): Conrad Harrison, Chris Sidey‐Gibbons, Anne F. Klassen, Karen W. Y. Wong Riff, Dominic Furniss, Marc C. Swan, Jeremy Rodrigues
Software Mentions: 10
Published: over 5 years ago

10.1038/s41416-020-0764-3

A common polymorphism in the retinoic acid pathway modifies adrenocortical carcinoma age-dependent incidence
Cited by: 7
Author(s): Mirvat Surakhy, Marsha D. Wallace, Elisabeth E. Bond, Lukasz F. Grochola, Husein Perez, Matteo Di Giovannantonio, Ping Zhang, David Malkin, Hannah Carter, Ivy Zortéa S Parise, Gerard P. Zambetti, Heloísa Komechen, Mariana M Paraizo, Meghana Pagadala, Emília M. Pinto, Enzo Lalli, Bonald C. Figueiredo, Gareth L. Bond
Software Mentions: 10
Published: about 6 years ago

10.3390/ijms22179601

In Silico Methods for the Identification of Diagnostic and Favorable Prognostic Markers in Acute Myeloid Leukemia
Cited by: 7
Author(s): Hande Öngün Yılmaz, Halil Ibrahim Toy, Stephan Marquardt, Gökhan Karakülah, Can Küçük, Panagiota I. Kontou, Stella Logotheti, Athanasia Pavlopoulou
Software Mentions: 10
Published: over 4 years ago

10.1093/gbe/evz003

Repeated Evolution Versus Common Ancestry: Sex Chromosome Evolution in the Haplochromine CichlidPseudocrenilabrus philander
Cited by: 25
Author(s): Astrid Böhne, Alexandra Anh‐Thu Weber, Jelena Rajkov, Michael Rechsteiner, Andrin Riss, Bernhard Egger, Walter Salzburger
Software Mentions: 10
Published: over 7 years ago

10.1128/mSphere.00334-20

Extreme Viral Partitioning in a Marine-Derived High Arctic Lake
Cited by: 13
Author(s): Myriam Labbé, Catherine Girard, Warwick F. Vincent, Alexander I. Culley
Software Mentions: 10
Published: almost 6 years ago

10.1007/s00401-020-02224-9

Altered DNA methylation profiles in blood from patients with sporadic Creutzfeldt–Jakob disease
Cited by: 14
Author(s): Luke C. Dabin, Fernando Guntoro, Tracy Campbell, Tony Bélicard, Adam R. Smith, Rebecca G. Smith, Rachel Raybould, Jonathan M. Schott, Katie Lunnon, Peter Sarkies, John Collinge, Simon Mead, Emmanuelle Viré
Software Mentions: 10
Published: over 5 years ago

10.1186/s11689-021-09360-7

Modeling familial predictors of proband outcomes in neurogenetic disorders: initial application in XYY syndrome
Cited by: 3
Author(s): Kathleen Wilson, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Allysa Warling, Ethan T. Whitman, Liv S. Clasen, Erin Torres, Jonathan D. Blumenthal, Armin Raznahan
Software Mentions: 10
Published: about 5 years ago

10.1038/s41598-020-74909-w

Multi-strain volatile profiling of pathogenic and commensal cutaneous bacteria
Cited by: 19
Author(s): Shane Fitzgerald, Emer Duffy, Linda Holland, Aoife Morrin
Software Mentions: 10
Published: over 5 years ago

10.3390/nu13061766

Multidimensional Approach to Assess Nutrition and Lifestyle in Breastfeeding Women during the First Month of Lactation
Cited by: 9
Author(s): Andrea Gila-Díaz, Nuria Díaz-Rullo Alcántara, Gloria Herranz Carrillo, Pratibha Singh, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 10
Published: almost 5 years ago

10.1038/srep43932

Implications of the cattle trade network in Cameroon for regional disease prevention and control
Cited by: 60
Author(s): Paolo Carlo Motta, Thibaud Porphyre, Ian Handel, Saidou M. Hamman, Victor Ngu Ngwa, Vincent N. Tanya, K. L. Morgan, Rob Christley, Barend M. deC. Bronsvoort
Software Mentions: 10
Published: about 9 years ago

10.1038/s41598-020-65160-4

Influence of climate variation on phenolic composition and antioxidant capacity of Medicago minima populations
Cited by: 45
Author(s): Souhir Kabtni, Dorra Sdouga, Ines Bettaib Rebey, Mattew Save, Neïla Trifi-Farah, Marie‐Laure Fauconnier, Sonia Marghali
Software Mentions: 10
Published: almost 6 years ago

10.18632/aging.202174

Periodontitis in elderly patients with type 2 diabetes mellitus: impact on gut microbiota and systemic inflammation
Cited by: 18
Author(s): Jinyou Li, Haifeng Lü, Hengchao Wu, Shunmei Huang, Lufang Chen, Qifeng Gui, Wenjing Zhou, Yichen Yang, Yue Wu, Hua Zhang, Qin Zhang, Yunmei Yang
Software Mentions: 10
Published: over 5 years ago

10.1186/s12920-020-00754-5

Identification of potential crucial genes in atrial fibrillation: a bioinformatic analysis
Cited by: 15
Author(s): Junguo Zhang, Xin Huang, Xiaojie Wang, Yanhui Gao, Li Liu, Ziyi Li, Xuejiao Chen, Jie Zeng, Zebing Ye, Guowei Li
Software Mentions: 10
Published: almost 6 years ago

10.1002/brb3.2174

Co‐activation pattern alterations in autism spectrum disorder–A volume‐wise hierarchical clustering fMRI study
Cited by: 2
Author(s): Jyri‐Johan Paakki, Jukka S. Rahko, Aija Kotila, Marja‐Leena Mattila, Helena Miettunen, Tuula Hurtig, Katja Jussila, Sanna Kuusikko‐Gauffin, Irma Moilanen, Osmo Tervonen, Vesa Kiviniemi
Software Mentions: 10
Published: almost 5 years ago

10.1186/s13059-014-0413-3

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators
Cited by: 19
Author(s): Laurence D. Hurst, Oxana Sachenkova, Carsten O. Daub, Alistair R.R. Forrest, Łukasz Huminiecki
Software Mentions: 10
Published: almost 12 years ago

10.1186/s12916-020-01595-w

Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection
Cited by: 30
Author(s): Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao, Tianlu Chen, Yixing Wang, Hua Zhang, Zhun Xiao, Xin-Zhu Liu, Youping Deng, Linda L. Wong, Cynthia Rajani, Sandi A. Kwee, Hua Bian, Xin Gao, Ping Liu, Jia Wang
Software Mentions: 10
Published: almost 6 years ago

10.1080/19336896.2020.1751574

Estimation of amyloid aggregate sizes with semi-denaturing detergent agarose gel electrophoresis and its limitations
Cited by: 10
Author(s): Polina Drozdova, Yury A. Barbitoff, М. В. Белоусов, Rostislav K. Skitchenko, Tatyana Rogoza, Jeremy Y Leclercq, Andrey V. Kajava, Andrew G. Matveenko, Galina A. Zhouravleva, Stanislav A. Bondarev
Software Mentions: 10
Published: over 6 years ago

10.1038/s41598-021-96236-4

A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma
Cited by: 5
Author(s): Yang Liu, Qiuhong Wu, Xuejiao Fan, Wen Li, Yong Li, Hui Zhu, Qinghua Zhou, Jinming Yu
Software Mentions: 10
Published: over 4 years ago

10.1002/ece3.4550

Size does matter: Parallel evolution of adaptive thermal tolerance and body size facilitates adaptation to climate change in domestic cattle
Cited by: 20
Author(s): Muhammed Elayadeth-Meethal, Aravindakshan Thazhathu Veettil, Shane K. Maloney, N. J. Hawkins, Tom Misselbrook, Veerasamy Sejian, M. Jordana Rivero, Michael R. F. Lee
Software Mentions: 10
Published: over 7 years ago

10.1038/s41598-020-62842-x

A year in the life of a North Atlantic seabird: behavioural and energetic adjustments during the annual cycle
Cited by: 28
Author(s): Ruth E. Dunn, Sarah Wanless, Francis Daunt, Michael Harris, Jonathan A. Green
Software Mentions: 9
Published: about 6 years ago

10.18632/oncotarget.12360

Prognostic effect of intratumoral neutrophils across histological subtypes of non-small cell lung cancer
Cited by: 45
Author(s): Mehrdad Rakaee, Lill-Tove Busund, Erna-Elise Paulsen, Elin Richardsen, Samer Al-Saad, Sigve Andersen, Tom Dønnem, Roy M. Bremnes, Thomas K. Kilvaer
Software Mentions: 9
Published: over 9 years ago

10.1128/mBio.00399-21

Salmonella enterica Serovar Typhimurium SPI-1 and SPI-2 Shape the Global Transcriptional Landscape in a Human Intestinal Organoid Model System
Cited by: 12
Author(s): Anna-Lisa E. Lawrence, Basel H. Abuaita, Ryan P. Berger, David R. Hill, Sha Huang, Veda K. Yadagiri, Brooke Bons, Courtney Fields, Christiane E. Wobus, Jason R. Spence, Vincent B. Young, Mary X. O’Riordan
Software Mentions: 9
Published: almost 5 years ago

10.1155/2021/7408893

Identification of a Four-lncRNA Prognostic Signature for Colon Cancer Based on Genome Instability
Cited by: 2
Author(s): Duo Yun, Zhimin Yang
Software Mentions: 9
Published: over 4 years ago

10.1155/2021/6657397

Identifying Stage II Colorectal Cancer Recurrence Associated Genes by Microarray Meta-Analysis and Building Predictive Models with Machine Learning Algorithms
Cited by: 2
Author(s): Wei Lu, Xiang Pan, Siqi Dai, Dongliang Fu, Maxwell Hwang, Yaowu Zhu, Lina Zhang, Jingsun Wei, Xianglong Kong, Jun Li, Qian Xiao, Kefeng Ding
Software Mentions: 9
Published: about 5 years ago

10.1038/srep40950

Unique Bacteria Community Composition and Co-occurrence in the Milk of Different Ruminants
Cited by: 21
Author(s): Zhipeng Li, André‐Denis G. Wright, Yumei Yang, Huazhe Si, Guangyu Li
Software Mentions: 9
Published: about 9 years ago

10.1002/ece3.7437

Mixing tree species associated with arbuscular or ectotrophic mycorrhizae reveals dual mycorrhization and interactive effects on the fungal partners
Cited by: 14
Author(s): Heike Heklau, Nicole Schindler, François Buscot, Nico Eisenhauer, Olga Ferlian, Luis Daniel Prada-Salcedo, Helge Bruelheide
Software Mentions: 9
Published: about 5 years ago

10.1155/2021/6290261

Identification of a Tumor Microenvironment-Related Gene Signature Indicative of Disease Prognosis and Treatment Response in Colon Cancer
Cited by: 24
Author(s): Wenzheng Chen, Jianfeng Huang, Jianbo Xiong, Pengcheng Fu, Changyu Chen, Yi Liu, Zhengrong Li, Zhigang Jie, Yi Cao
Software Mentions: 9
Published: over 4 years ago

10.1038/s41598-021-88943-9

Characterizing rumen microbiota and CAZyme profile of Indian dromedary camel (Camelus dromedarius) in response to different roughages
Cited by: 17
Author(s): Ankit T. Hinsu, Nilam J. Tulsani, Ketankumar Panchal, Ramesh Pandit, Basanti Jyotsana, Nishant A. Dafale, N. B. Patil, Hemant J. Purohit, Chaitanya Joshi, Subhash J. Jakhesara
Software Mentions: 9
Published: almost 5 years ago

10.3390/ijerph18010318

Mapping the Scientific Landscape of Diabetes Research in Malaysia (2000–2018): A Systematic Scientometrics Study
Cited by: 5
Author(s): Kurubaran Ganasegeran, Chee Peng Hor, Mohd Fadzly Amar Jamil, Purnima Devi Suppiah, Juliana Mohd Noor, Norshahida Abdul Hamid, Deik Roy Chuan, Mohd Rizal Abdul Manaf, Alan Swee Hock Ch’ng, Irene Looi
Software Mentions: 9
Published: over 5 years ago

10.1038/srep46112

Large-scale SNP discovery and construction of a high-density genetic map of Colossoma macropomum through genotyping-by-sequencing
Cited by: 31
Author(s): José de Ribamar da Silva Nunes, Shikai Liu, Fábio Pértille, Caio Augusto Perazza, Priscilla Marqui Schmidt Villela, Vera Maria Fonseca de Almeida-Val, Alexandre Wagner Silva Hilsdorf, Zhanjiang Liu, Luiz Lehmann Coutinho
Software Mentions: 9
Published: about 9 years ago

10.1038/s41598-018-31780-0

DNA hypermethylation and differential gene expression associated with Klinefelter syndrome
Cited by: 67
Author(s): Anne Skakkebæk, Morten Muhlig Nielsen, Christian Trolle, Søren Vang, Henrik Hornshøj, Jakob Hedegaard, Mikkel Wallentin, Anders Bojesen, Jens Michael Hertz, Jens Fedder, John R. Østergaard, Jakob Skou Pedersen, Claus Højbjerg Gravholt
Software Mentions: 9
Published: over 7 years ago

10.1038/s41598-021-86638-9

Entomopathogenic fungi as the microbial frontline against the alien Eucalyptus pest Gonipterus platensis in Brazil
Cited by: 17
Author(s): Carolina Jordan, Pâmela Letícia dos Santos, Leiliane Oliveira, Maurício Magalhães Domingues, Bianca Cristina Costa Gêa, M. F. S. Ribeiro, Gabriel Moura Mascarin, Carlos Frederico Wilcken
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-020-76603-3

VolcaNoseR is a web app for creating, exploring, labeling and sharing volcano plots
Cited by: 230
Author(s): Joachim Goedhart, Martijn S. Luijsterburg
Software Mentions: 9
Published: over 5 years ago

10.1186/s12866-021-02211-4

Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana
Cited by: 10
Author(s): Justin Maire, Linda L. Blackall, Madeleine J. H. van Oppen
Software Mentions: 9
Published: almost 5 years ago

10.2196/10076

Key Elements of mHealth Interventions to Successfully Increase Physical Activity: Meta-Regression
Cited by: 56
Author(s): Lisa V. Eckerstorfer, Norbert K. Tanzer, Claudia Vogrincic-Haselbacher, Gayannée Kedia, Hilmar Brohmer, Isabelle Dinslaken, Katja Corcoran
Software Mentions: 9
Published: over 7 years ago

10.1098/rspb.2018.0270

Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure
Cited by: 20
Author(s): Eli Amson, Guillaume Billet, Christian de Muizon
Software Mentions: 9
Published: almost 8 years ago

10.1186/s13059-021-02374-3

The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle
Cited by: 18
Author(s): Mayra Furlan-Magaril, Masami Ando-Kuri, Rodrigo G. Arzate-Mejía, Jörg Morf, Jonathan Cairns, Abraham Román-Figueroa, Luis Tenorio-Hernández, Augusto César Poot-Hernández, Simon Andrews, Csilla Várnai, Boo Virk, Steven Wingett, Peter Fraser
Software Mentions: 9
Published: almost 5 years ago

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Papers Mentioning ggplot2 11,441