cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1042/BSR20201734

Identification prognosis-associated immune genes in colon adenocarcinoma
Cited by: 16
Author(s): Yifei Miao, Jiangtao Wang, Xueping Ma, Yuan Yang, Denghai Mi
Software Mentions: 10
Published: over 5 years ago

10.1128/mSystems.00541-20

Evidence for Succession and Putative Metabolic Roles of Fungi and Bacteria in the Farming Mutualism of the Ambrosia Beetle Xyleborus affinis
Cited by: 17
Author(s): Luis A. Ibarra-Juárez, Maureen Burton, Peter H. W. Biedermann, Luisa F. Cruz, Damaris Desgarennes, Enrique Ibarra-Laclette, Amparo Latorre, Alexandro Alonso-Sánchez, Emanuel Villafán, Greta Hanako-Rosas, Loredana Lopez, Mirna Vázquez-Rosas-Landa, Gloria Carrión, Daniel Carrillo, Andrés Moya, Araceli Lamelas
Software Mentions: 10
Published: over 5 years ago

10.3389/fonc.2021.643465

Identification of the Roles of a Stemness Index Based on mRNA Expression in the Prognosis and Metabolic Reprograming of Pancreatic Ductal Adenocarcinoma
Cited by: 6
Author(s): Rong Tang, Xiaomeng Liu, Wei Wang, Jie Hua, Jin Xu, Chen Liang, Qingcai Meng, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Software Mentions: 10
Published: almost 5 years ago

10.1007/s00401-020-02224-9

Altered DNA methylation profiles in blood from patients with sporadic Creutzfeldt–Jakob disease
Cited by: 14
Author(s): Luke C. Dabin, Fernando Guntoro, Tracy Campbell, Tony Bélicard, Adam R. Smith, Rebecca G. Smith, Rachel Raybould, Jonathan M. Schott, Katie Lunnon, Peter Sarkies, John Collinge, Simon Mead, Emmanuelle Viré
Software Mentions: 10
Published: over 5 years ago

10.1093/aje/kwaa127

Conditional Cash Transfer Program and Leprosy Incidence: Analysis of 12.9 Million Families From the 100 Million Brazilian Cohort
Cited by: 15
Author(s): Júlia Moreira Pescarini, Elizabeth Williamson, Maria Yury Ichihara, Rosemeire Leovigildo Fiaccone, Laura Forastiere, Anna Ramond, Joilda Silva Nery, Maria Lúcia Fernandes Penna, Agostino Strina, Sandra Reis, Liam Smeeth, Laura C. Rodrigues, Elizabeth B Brickley, Gerson Oliveira Penna, Marcos Barreto
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-021-96236-4

A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma
Cited by: 5
Author(s): Yang Liu, Qiuhong Wu, Xuejiao Fan, Wen Li, Yong Li, Hui Zhu, Qinghua Zhou, Jinming Yu
Software Mentions: 10
Published: over 4 years ago

10.1186/s12864-015-2250-5

Leveraging global gene expression patterns to predict expression of unmeasured genes
Cited by: 3
Author(s): James Rudd, René A. Zelaya, Eugene Demidenko, Ellen L. Goode, Casey S. Greene, Jennifer A. Doherty
Software Mentions: 10
Published: about 10 years ago

10.18632/aging.102434

Development and validation of a metastasis-associated prognostic signature based on single-cell RNA-seq in clear cell renal cell carcinoma
Cited by: 28
Author(s): Chuanjie Zhang, Hongchao He, Xin Hu, Ao Liu, Da Huang, Yu Xu, Lu Chen, Danfeng Xu
Software Mentions: 10
Published: about 6 years ago

10.3390/cells9030779

Transcriptomic Insights into Mechanisms of Early Seed Maturation in the Garden Pea (Pisum sativum L.)
Cited by: 12
Author(s): Yury V. Malovichko, O. Y. Shtark, Ekaterina N. Vasileva, Anton A. Nizhnikov, Kirill S. Antonets
Software Mentions: 10
Published: almost 6 years ago

10.1155/2021/5567392

Construction and Validation of a Novel Prognostic Signature for Intestinal Type of Gastric Cancer
Cited by: 3
Author(s): Fan Zhang, Ewetse Paul Maswikiti, Yucai Wei, Wenzhang Wu, Yumin Li
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-021-94329-8

Combined detection of peripheral blood VEGF and inflammation biomarkers to evaluate the clinical response and prognostic prediction of non-operative ESCC
Cited by: 4
Author(s): Yuanyuan Ma, Xinyu Su, Xin Li, Xiaohui Zhi, Kan Jiang, Jianhong Xia, Hongliang Li, Yan Chen, Lixin Zhou
Software Mentions: 10
Published: over 4 years ago

10.1186/s12864-015-2356-9

QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization
Cited by: 33
Author(s): Shanrong Zhao, Li Xi, Jie Quan, Hualin Simon Xi, Ying Zhang, David von Schack, Michael S. Vincent, Baohong Zhang
Software Mentions: 10
Published: about 10 years ago

10.3389/fneur.2021.683051

An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage
Cited by: 8
Author(s): Ping Hu, Yang Xu, Yangfan Liu, Yuntao Li, Liguo Ye, Si Zhang, Xinyi Zhu, Yangzhi Qi, Huikai Zhang, Qian Sun, Yixuan Wang, Gang Deng, Qianxue Chen
Software Mentions: 10
Published: over 4 years ago

10.1016/j.celrep.2020.107885

CD4+ T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features
Cited by: 9
Author(s): Alexander Greenshields‐Watson, Meriem Attaf, Bruce J. MacLachlan, Thomas Whalley, Cristina Rius, Aaron Wall, Alun G. Lloyd, Hywel Hughes, Kathryn E. Strange, Georgina H Mason, Andrea J. A. Schauenburg, Sarah Hulin-Curtis, James Geary, Yuan Chen, Sarah N. Lauder, Kathryn Smart, Dhanasekaran Vijaykrishna, Miguel L. Grau, Mikhail Shugay, Robert Andrews, Garry Dolton, P.J. Rizkallah, Awen Gallimore, Andrew K. Sewell, Andrew Godkin, David K. Cole
Software Mentions: 10
Published: over 5 years ago

10.3389/fmolb.2021.692530

Ferroptosis-Related Gene Signature and Patterns of Immune Infiltration Predict the Overall Survival in Patients With Lung Adenocarcinoma
Cited by: 5
Author(s): Yuxuan Wang, Weikang Chen, Minqi Zhu, Lei Xian
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-021-89904-y

Feasibility of predicting allele specific expression from DNA sequencing using machine learning
Cited by: 5
Author(s): Zhenhua Zhang, Freerk van Dijk, Nigel Klein, Mariëlle van Gijn, Lude Franke, Richard J. Sinke, Morris A. Swertz, K. Joeri van der Velde
Software Mentions: 10
Published: over 4 years ago

10.1111/pbi.13299

Learning from methylomes: epigenomic correlates ofPopulus balsamiferatraits based on deep learning models of natural DNA methylation
Cited by: 9
Author(s): Marc J. Champigny, Faride Unda, Oleksandr Skyba, Raju Soolanayakanahally, Shawn D. Mansfield, Malcolm M. Campbell
Software Mentions: 10
Published: about 6 years ago

10.1038/s41598-020-72369-w

Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology
Cited by: 10
Author(s): Natacha Nikolic, Iratxe Montes, Maxime Lalire, Alexis Puech, Nathalie Bodin, Sophie Arnaud‐Haond, Sven E. Kerwath, Emmanuel Corse, Philippe Gaspar, Stéphanie Hollanda, Jérôme Bourjea, Wendy West, Sylvain Bonhommeau
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-020-72047-x

Light intensity regulates flower visitation in Neotropical nocturnal bees
Cited by: 11
Author(s): Rodolfo Liporoni, Guaraci Duran Cordeiro, Paulo Inácio Prado, Clemens Schlindwein, Eric J. Warrant, Isabel Alves‐dos‐Santos
Software Mentions: 10
Published: over 5 years ago

10.3389/fvets.2020.00604

Autoregressive Models Applied to Time-Series Data in Veterinary Science
Cited by: 9
Author(s): Michael P. Ward, Rachel M Iglesias, Victoria Brookes
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-020-72272-4

Video-assisted thoracoscopic lobectomy is feasible for selected patients with clinical N2 non-small cell lung cancer
Cited by: 7
Author(s): Jae Kwang Yun, Geun Dong Lee, Sehoon Choi, Hyeong Ryul Kim, Yong Hee Kim, Seung-Il Park, Dong Kwan Kim
Software Mentions: 10
Published: over 5 years ago

10.1186/s40168-020-00895-w

Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota
Cited by: 32
Author(s): Shashank Gupta, Mathis Hjort Hjelmsø, Jenni Lehtimäki, Xuanji Li, Martin Steen Mortensen, Jakob Russel, Urvish Trivedi, Morten Arendt Rasmussen, Jakob Stokholm, Hans Bisgaard, Søren J. Sørensen
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-020-71663-x

Discovering the indigenous microbial communities associated with the natural fermentation of sap from the cider gum Eucalyptus gunnii
Cited by: 12
Author(s): Cristián Varela, Joanna F. Sundstrom, Kathleen Cuijvers, Vladimir Jiranek, Anthony R. Borneman
Software Mentions: 10
Published: over 5 years ago

10.1111/jcmm.16619

Systematic profiling of invasion‐related gene signature predicts prognostic features of lung adenocarcinoma
Cited by: 17
Author(s): Ping Yu, L. Tong, Yujia Song, Hui Qü, Ying Chen
Software Mentions: 10
Published: over 4 years ago

10.1155/2020/5858092

Profiles of Immune Infiltration and Prognostic Immunoscore in Lung Adenocarcinoma
Cited by: 9
Author(s): Yanyan Li, Liping Tao, Weiyang Cai
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-020-70722-7

Active and social life is associated with lower non-social fearfulness in pet dogs
Cited by: 15
Author(s): Emma Hakanen, Salla Mikkola, Milla Salonen, Jenni Puurunen, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 10
Published: over 5 years ago

10.7717/peerj.11222

The postcranial skeleton of Cerrejonisuchus improcerus (Crocodyliformes: Dyrosauridae) and the unusual anatomy of dyrosaurids
Cited by: 1
Author(s): Isaure Scavezzoni, Valentin Fischer
Software Mentions: 10
Published: almost 5 years ago

10.3389/pore.2021.594649

Bcl-2 Associated Athanogene 2 (BAG2) is Associated With Progression and Prognosis of Hepatocellular Carcinoma: A Bioinformatics-Based Analysis
Cited by: 7
Author(s): Xi Zhang, Junjun Zhang, Yang Liu, Jie Li, Juan Tan, Zewen Song
Software Mentions: 10
Published: almost 5 years ago

10.1038/s41598-020-65160-4

Influence of climate variation on phenolic composition and antioxidant capacity of Medicago minima populations
Cited by: 45
Author(s): Souhir Kabtni, Dorra Sdouga, Ines Bettaib Rebey, Mattew Save, Neïla Trifi-Farah, Marie‐Laure Fauconnier, Sonia Marghali
Software Mentions: 10
Published: over 5 years ago

10.1099/mgen.0.000552

Direct identification and molecular characterization of zoonotic hazards in raw milk by metagenomics using Brucella as a model pathogen
Cited by: 6
Author(s): Josephine Grützke, Mayada Gwida, Carlus Deneke, Holger Brendebach, Michaela Projahn, Alexander Schattschneider, Dirk Hofreuter, Maged El-Ashker, Burkhard Malorny, Sascha Al Dahouk
Software Mentions: 10
Published: almost 5 years ago

10.3390/cancers13133175

Transcript-Level Dysregulation of BCL2 Family Genes in Acute Myeloblastic Leukemia
Cited by: 7
Author(s): Luiza Handschuh, Paweł Wojciechowski, Maciej Kaźmierczak, K Lewandowski
Software Mentions: 10
Published: over 4 years ago

10.3389/fmicb.2020.597745

Impact of Long-Term Organic and Mineral Fertilization on Rhizosphere Metabolites, Root–Microbial Interactions and Plant Health of Lettuce
Cited by: 15
Author(s): Saskia Windisch, Loreen Sommermann, Doreen Babin, Soumitra Paul Chowdhury, Rita Grosch, Narges Moradtalab, Frank Walker, Birgit Höglinger, Abbas El‐Hasan, Wolfgang Armbruster, Joseph Nesme, Søren J. Sørensen, Ingo Schellenberg, Joerg Geistlinger, Kornelia Smalla, Michael Rothballer, Uwe Ludewig, Günter Neumann
Software Mentions: 10
Published: about 5 years ago

10.1038/s41598-020-62453-6

Patterns of Rift Valley fever virus seropositivity in domestic ruminants in central South Africa four years after a large outbreak
Cited by: 19
Author(s): Yusuf B. Ngoshe, Alida Avenant, Melinda K. Rostal, William B. Karesh, Janusz T. Pawęska, Whitney Bagge, Petrus Jansen van Vuren, Alan C. Kemp, Claudia Cordel, Veerle Msimang, Peter N. Thompson
Software Mentions: 10
Published: almost 6 years ago

10.1038/srep43932

Implications of the cattle trade network in Cameroon for regional disease prevention and control
Cited by: 60
Author(s): Paolo Carlo Motta, Thibaud Porphyre, Ian Handel, Saidou M. Hamman, Victor Ngu Ngwa, Vincent N. Tanya, K. L. Morgan, Rob Christley, Barend M. deC. Bronsvoort
Software Mentions: 10
Published: almost 9 years ago

10.1186/s13071-020-04319-4

Retrospective analysis of feline intestinal parasites: trends in testing positivity by age, USA geographical region and reason for veterinary visit
Cited by: 7
Author(s): Sarah Sweet, Donald Szlosek, Donald J. McCrann, Michael J. Coyne, David Kincaid, Evan Hegarty
Software Mentions: 10
Published: over 5 years ago

10.3389/fmicb.2020.00037

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies
Cited by: 164
Author(s): Arkadiy I. Garber, Kenneth H. Nealson, Akimitsu Okamoto, Sean M. McAllister, Clara S. Chan, Roman A. Barco, Nancy Merino
Software Mentions: 10
Published: about 6 years ago

10.1038/s41598-019-45491-7

The future of coffee and cocoa agroforestry in a warmer Mesoamerica
Cited by: 58
Author(s): Kauê de Sousa, Maarten van Zonneveld, Milena Holmgren, Roeland Kindt, Jenny C. Ordóñez
Software Mentions: 10
Published: over 6 years ago

10.3390/v12111229

RNAseq of Deformed Wing Virus and Other Honey Bee-Associated Viruses in Eight Insect Taxa with or without Varroa Infestation
Cited by: 17
Author(s): Laura E. Brettell, Declan C. Schroeder, Stephen J. Martin
Software Mentions: 10
Published: over 5 years ago

10.3389/fpsyg.2021.620307

No Evidence for a Decrease in Physical Activity Among Swiss Office Workers During COVID-19: A Longitudinal Study
Cited by: 19
Author(s): Andrea Martina Aegerter, Manja Deforth, Gisela Sjøgaard, Venerina Johnston, Thomas Volken, Hannu Luomajoki, Julia Dratva, Holger Dressel, Oliver Distler, Markus Melloh, Achim Elfering
Software Mentions: 10
Published: about 5 years ago

10.3389/fgene.2021.682475

Genomic and Chemical Diversity of Commercially Available High-CBD Industrial Hemp Accessions
Cited by: 10
Author(s): Matthew Johnson, Jason Wallace
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-019-46168-x

Cytotoxic unsaturated electrophilic compounds commonly target the ubiquitin proteasome system
Cited by: 16
Author(s): Karthik Selvaraju, Arjan Mofers, Paola Pellegrini, Johannes Salomonsson, Alexandra Ahlner, Vivian Morad, Ellin-Kristina Hillert, Belén Espinosa, Elias S.J. Arnér, Lasse Jensen, Jonas Malmström, Maria V. Turkina, Pádraig D’Arcy, Michael A. Walters, Maria Sunnerhagen, Stig Linder
Software Mentions: 10
Published: over 6 years ago

10.3389/fgene.2019.00279

Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis
Cited by: 46
Author(s): Verónica Jiménez-Jacinto, Alejandro Sánchez-Flores, Leticia Vega‐Alvarado
Software Mentions: 10
Published: almost 7 years ago

10.1371/journal.pcbi.1007803

Methodological challenges in translational drug response modeling in cancer: A systematic analysis with FORESEE
Cited by: 9
Author(s): Lisa-Katrin Turnhoff, Ali Hadizadeh Esfahani, Andreas Schuppert
Software Mentions: 10
Published: almost 6 years ago

10.1038/s41598-017-09303-0

The impact of immigration on microbial community composition in full-scale anaerobic digesters
Cited by: 111
Author(s): Rasmus Hansen Kirkegaard, Simon Jon McIlroy, Jannie Munk Kristensen, Marta Nierychlo, Søren Michael Karst, Morten Simonsen Dueholm, Mads Albertsen, Per Halkjær Nielsen
Software Mentions: 10
Published: over 8 years ago

10.1038/s41598-019-46290-w

GeneHunt for rapid domain-specific annotation of glycoside hydrolases
Cited by: 14
Author(s): SC Nguyen, A. Flores, D. Talamantes, Furqan Dar, Adrian Roy L. Valdez, Jason P. Schwans, Renaud Berlemont
Software Mentions: 10
Published: over 6 years ago

10.1038/s41598-017-05505-8

Machine Learning Algorithms for Risk Prediction of Severe Hand-Foot-Mouth Disease in Children
Cited by: 15
Author(s): Bin Zhang, Xiang Wan, Fu Ouyang, Yu Dong, Dehui Luo, Jing Liu, Long Liang, Wen Bo Chen, Xiao Luo, Xiao Mo, Lu Zhang, Wen Hui Huang, Shu Fang Pei, Bao Liang Guo, Chun Liang, Long Zhou, Shui Xing Zhang
Software Mentions: 10
Published: over 8 years ago

10.3389/fgene.2018.00461

TEsmall Identifies Small RNAs Associated With Targeted Inhibitor Resistance in Melanoma
Cited by: 4
Author(s): Kathryn O’Neill, Wen‐Wei Liao, Asmita Patel, Molly Gale Hammell
Software Mentions: 10
Published: over 7 years ago

10.1002/ece3.4550

Size does matter: Parallel evolution of adaptive thermal tolerance and body size facilitates adaptation to climate change in domestic cattle
Cited by: 20
Author(s): Muhammed Elayadeth-Meethal, Aravindakshan Thazhathu Veettil, Shane K. Maloney, N. J. Hawkins, Tom Misselbrook, Veerasamy Sejian, M. Jordana Rivero, Michael R. F. Lee
Software Mentions: 10
Published: over 7 years ago

10.3390/microorganisms9061308

Phenotypic and Genotypic Properties of Fluoroquinolone-Resistant, qnr-Carrying Escherichia coli Isolated from the German Food Chain in 2017
Cited by: 7
Author(s): Katharina Juraschek, Carlus Deneke, Silvia Schmoger, Mirjam Grobbel, Burkhard Malorny, Annemarie Käsbohrer, Štefan Schwarz, Diana Meemken, Jens A. Hammerl
Software Mentions: 10
Published: over 4 years ago

10.1002/ece3.5599

Linking pollen foraging of megachilid bees to their nest bacterial microbiota
Cited by: 29
Author(s): Anna Voulgari‐Kokota, Markus J. Ankenbrand, Gudrun Grimmer, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 10
Published: over 6 years ago

10.1186/s13071-020-04461-z

Oviposition of Aedes japonicus japonicus (Diptera: Culicidae) and associated native species in relation to season, temperature and land use in western Germany
Cited by: 12
Author(s): Linus Früh, Helge Kampen, Marcel B. Koban, Nadja Pernat, Günter A. Schaub, Doreen Werner
Software Mentions: 10
Published: about 5 years ago

10.1186/s12920-020-00754-5

Identification of potential crucial genes in atrial fibrillation: a bioinformatic analysis
Cited by: 15
Author(s): Junguo Zhang, Xin Huang, Xiaojie Wang, Yanhui Gao, Li Liu, Ziyi Li, Xuejiao Chen, Jie Zeng, Zebing Ye, Guowei Li
Software Mentions: 10
Published: over 5 years ago

10.1371/journal.pone.0250477

Geometric morphometric analysis of spore shapes improves identification of fungi
Cited by: 0
Author(s): Alexander Ordynets, Sarah Jayne Kessler, Ewald Langer
Software Mentions: 10
Published: over 4 years ago

10.1186/s12864-019-6181-4

Dynamic transcriptome sequencing and analysis during early development in the bighead carp (Hypophthalmichthys nobilis)
Cited by: 12
Author(s): Jianjun Fu, Wenbin Zhu, Lanmei Wang, Ming Luo, Fei Song, Zaijie Dong
Software Mentions: 10
Published: over 6 years ago

10.1186/s12859-020-03549-8

BEAVR: a browser-based tool for the exploration and visualization of RNA-seq data
Cited by: 12
Author(s): Pirunthan Perampalam, Frederick A. Dick
Software Mentions: 10
Published: over 5 years ago

10.1371/journal.pgen.1009376

Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae
Cited by: 46
Author(s): Wei Zhang, Jun Huang, David E. Cook
Software Mentions: 10
Published: about 5 years ago

10.1186/s12918-015-0169-8

Increased robustness of early embryogenesis through collective decision-making by key transcription factors
Cited by: 8
Author(s): Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi
Software Mentions: 10
Published: over 10 years ago

10.1371/journal.pcbi.1009380

Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants
Cited by: 11
Author(s): Rui Yin, Johnathan D. Guest, Ghazaleh Taherzadeh, Ragul Gowthaman, Ipsa Mittra, Jane Quackenbush, Brian G. Pierce
Software Mentions: 10
Published: over 4 years ago

10.7554/eLife.66036

A new Heterodontosaurus specimen elucidates the unique ventilatory macroevolution of ornithischian dinosaurs
Cited by: 8
Author(s): Viktor J. Radermacher, Vincent Fernández, Emma R. Schachner, Richard J. Butler, Emese M. Bordy, Michael Naylor Hudgins, William J. De Klerk, Kimberley E. J. Chapelle, Jonah N. Choiniere
Software Mentions: 10
Published: over 4 years ago

10.1002/brb3.2174

Co‐activation pattern alterations in autism spectrum disorder–A volume‐wise hierarchical clustering fMRI study
Cited by: 2
Author(s): Jyri‐Johan Paakki, Jukka S. Rahko, Aija Kotila, Marja‐Leena Mattila, Helena Miettunen, Tuula Hurtig, Katja Jussila, Sanna Kuusikko‐Gauffin, Irma Moilanen, Osmo Tervonen, Vesa Kiviniemi
Software Mentions: 10
Published: almost 5 years ago

10.1098/rsos.171218

Tongues on the EDGE: language preservation priorities based on threat and lexical distinctiveness
Cited by: 2
Author(s): Nicolas Perrault, Maxwell J. Farrell, T. Jonathan Davies
Software Mentions: 10
Published: about 8 years ago

10.1371/journal.pone.0114749

FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis
Cited by: 88
Author(s): Alex Herbert, Antony Carr, Eva R. Hoffmann
Software Mentions: 10
Published: about 11 years ago

10.3389/fgene.2021.692953

Identification of the Real Hub Gene and Construction of a Novel Prognostic Signature for Pancreatic Adenocarcinoma Based on the Weighted Gene Co-expression Network Analysis and Least Absolute Shrinkage and Selection Operator Algorithms
Cited by: 15
Author(s): Qihang Yuan, Jie Ren, Zhizhou Wang, Ji Li, Dawei Deng, Dong Shang
Software Mentions: 10
Published: over 4 years ago

10.1111/jcmm.15848

m6A RNA methylation regulators could contribute to the occurrence of chronic obstructive pulmonary disease
Cited by: 43
Author(s): Xinwei Huang, Dongjin Lv, Yao Xiao, Min Li, Hong Zhang
Software Mentions: 10
Published: over 5 years ago

10.3389/fgene.2021.695130

A Novel Signature Constructed by Immune-Related LncRNA Predicts the Immune Landscape of Colorectal Cancer
Cited by: 7
Author(s): Mengyu Sun, Tongyue Zhang, Yijun Wang, Wenjie Huang, Limin Xia
Software Mentions: 10
Published: over 4 years ago

10.1098/rsos.191333

Now or never: noticing occurs early in sustained inattentional blindness
Cited by: 4
Author(s): Katherine Wood, Daniel J. Simons
Software Mentions: 10
Published: over 6 years ago

10.1038/s41416-020-0764-3

A common polymorphism in the retinoic acid pathway modifies adrenocortical carcinoma age-dependent incidence
Cited by: 7
Author(s): Mirvat Surakhy, Marsha D. Wallace, Elisabeth E. Bond, Lukasz F. Grochola, Husein Perez, Matteo Di Giovannantonio, Ping Zhang, David Malkin, Hannah Carter, Ivy Zortéa S Parise, Gerard P. Zambetti, Heloísa Komechen, Mariana M Paraizo, Meghana Pagadala, Emília M. Pinto, Enzo Lalli, Bonald C. Figueiredo, Gareth L. Bond
Software Mentions: 10
Published: almost 6 years ago

10.3389/fcell.2021.731790

Identification and Validation of a Nine-Gene Amino Acid Metabolism-Related Risk Signature in HCC
Cited by: 34
Author(s): Yajuan Zhao, Junli Zhang, Shuhan Wang, Qianqian Jiang, Ke Xu
Software Mentions: 10
Published: over 4 years ago

10.1186/s12916-020-01595-w

Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection
Cited by: 30
Author(s): Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao, Tianlu Chen, Yixing Wang, Hua Zhang, Zhun Xiao, Xin-Zhu Liu, Youping Deng, Linda L. Wong, Cynthia Rajani, Sandi A. Kwee, Hua Bian, Xin Gao, Ping Liu, Jia Wang
Software Mentions: 10
Published: over 5 years ago

10.1172/jci.insight.138970

Hypoxia acts as an environmental cue for the human tissue-resident memory T cell differentiation program
Cited by: 21
Author(s): Farah Hasan, Yulun Chiu, Rebecca Shaw, Junmei Wang, Cassian Yee
Software Mentions: 10
Published: over 4 years ago

10.1172/jci.insight.145854

Cell-autonomous retinoic acid receptor signaling has stage-specific effects on mouse enteric nervous system
Cited by: 6
Author(s): Tao Gao, Elizabeth C. Wright-Jin, Rajarshi Sengupta, Jessica B. Anderson, Robert O. Heuckeroth
Software Mentions: 10
Published: over 4 years ago

10.1371/journal.pone.0178895

Familiarity facilitates feature-based face processing
Cited by: 18
Author(s): Matteo Visconti di Oleggio Castello, Kelsey G. Wheeler, Carlo Cipolli, M. Ida Gobbini
Software Mentions: 10
Published: over 8 years ago

10.1172/jci.insight.147535

The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2–infected patients by sex and age
Cited by: 12
Author(s): Paula Paccielli Freire, Amélia Pasqual Marques, G. Baiocchi, Lena F. Schimke, Dennyson Leandro M. Fonseca, Ranieri Coelho Salgado, Igor Salerno Filgueiras, Sarah M.S. Napoleao, Desirée Rodrigues Plaça, Karen Tiemi Akashi, Thiago Dominguez Crespo Hirata, Nadia El Khawanky, Lasse Melvær Giil, Gustavo Cabral-Miranda, Robson Francisco Carvalho, Luís Carlos S. Ferreira, Antônio Condino‐Neto, Helder I. Nakaya, Igor Jurišica, Hans D. Ochs, Niels Olsen Saraiva Câmara, Vera Lúcia Garcia Calich, Otávio Cabral-Marques
Software Mentions: 10
Published: over 4 years ago

10.1155/2017/7457131

NFP: An R Package for Characterizing and Comparing of Annotated Biological Networks
Cited by: 0
Author(s): Yang Cao, Wenjian Xu, Chao Niu, Xiaochen Bo, Fēi Li
Software Mentions: 10
Published: about 9 years ago

10.1001/jamanetworkopen.2021.14162

Association of Copy Number Variation Signature and Survival in Patients With Serous Ovarian Cancer
Cited by: 14
Author(s): Ryon P. Graf, Ramez N. Eskander, Leo Brueggeman, Dwayne G. Stupack
Software Mentions: 10
Published: over 4 years ago

10.1093/iob/obaa024

The Balance Hypothesis for the Avian Lumbosacral Organ and an Exploration of Its Morphological Variation
Cited by: 11
Author(s): Kathryn E Stanchak, C. French, David J. Perkel, Bingni W. Brunton
Software Mentions: 10
Published: about 6 years ago

10.1186/s12967-020-02353-5

Nomograms to predict 2-year overall survival and advanced schistosomiasis-specific survival after discharge: a competing risk analysis
Cited by: 7
Author(s): Guo Li, Lifei Lian, Shanshan Huang, Jinfeng Miao, Huấn Cao, Chengchao Zuo, Xiaoyan Liu, Zhou Zhu
Software Mentions: 10
Published: almost 6 years ago

10.3389/fgene.2020.00260

IntAssoPlot: An R Package for Integrated Visualization of Genome-Wide Association Study Results With Gene Structure and Linkage Disequilibrium Matrix
Cited by: 20
Author(s): Fengyu He, Shuangcheng Ding, Hongwei Wang, Feng Qin
Software Mentions: 10
Published: almost 6 years ago

10.1093/plankt/fbaa017

Rapid succession drives spring community dynamics of small protists at Helgoland Roads, North Sea
Cited by: 11
Author(s): Laura Käse, Alexandra Kraberg, Katja Metfies, Stefan Neuhaus, Pim Sprong, Bernhard M. Fuchs, Maarten Boersma, Karen Helen Wiltshire
Software Mentions: 10
Published: almost 6 years ago

10.18632/aging.202174

Periodontitis in elderly patients with type 2 diabetes mellitus: impact on gut microbiota and systemic inflammation
Cited by: 18
Author(s): Jinyou Li, Haifeng Lü, Hengchao Wu, Shunmei Huang, Lufang Chen, Qifeng Gui, Wenjing Zhou, Yichen Yang, Yue Wu, Hua Zhang, Qin Zhang, Yunmei Yang
Software Mentions: 10
Published: about 5 years ago

10.3390/microorganisms9081723

Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous System
Cited by: 7
Author(s): Jacques Gonzalès, Justine Marchix, Laetitia Aymeric, Catherine Le Berre‐Scoul, Johanna Zoppi, Philippe Bordron, Marie Burel, Laetitia Davidovic, J. L. Richard, Alexandru Gaman, Florian Lejuste, Julie Z. Brouillet, Françoise Le Vacon, Samuel Chaffron, Marion Leboyer, Hélène Boudin, Michel Neunlist
Software Mentions: 10
Published: over 4 years ago

10.1002/bjs.10203

Multicentre prospective cohort study of body mass index and postoperative complications following gastrointestinal surgery
Cited by: 62
Author(s): T M Drake, Dmitri Nepogodiev, Stephen J. Chapman, James C Glasbey, Chetan Khatri, Chia Yew Kong, Henry Claireaux, M F Bath, Midhun Mohan, Lisa McNamee, Michael E. Kelly, Harriet Mitchell, J Edward Fitzgerald, Ewen M Harrison, Aneel Bhangu, Henry Claireaux, Irini M. Antoniou, Richard H. Dean, Natalie A. Davies, Shaun Trecarten, Ian Henderson, Charlotte Holmes, Joanne Wylie, R H Shuttleworth, Anurag Jindal, F Hughes, Pishoy Gouda, Lisa McNamee, Robert Fleck, Michael Hanrahan, Priyadarssini Karunakaran, J H Chen, Mark Sykes, Rajiv K. Sethi, S. Suresh, Panna Patel, M Patel, Rick Varma, Jameel Mushtaq, Buket Gundogan, William Bolton, Midhun Mohan, T Khan, Joshua Burke, R Morley, Nicolò Favero, R. Adams, Vanushia Thirumal, Ewan D. Kennedy, Kenneth Ong, Yulin Tan, Joseph Gabriel, Ali Bakhsh, Jillian Low, Ahmet Levent Yener, Vlad Paraoan, Ryan Preece, Thomas Tilston, Elspeth Cumber, S Dean, Talisa Ross, Eleanor McCance, H. Amin, L. Satterthwaite, Keiran Clement, Robert Gratton, Edward David Mills, Seehui Chiu, Guo Dung Hung, N M Rafiq, John D. Hayes, K Robertson, K Dynes, Han-Sheng Huang, Shershah Assadullah, Joseph W. Duncumb, Richard Moon, Stephanie Poo, J.K. Mehta, K Joshi, Rory Callan, Jonathan Norris, Nicholas Chilvers, Harry Keevil, P Jull, Shweta Mallick, D. Elf, L. M. Carr, C. Player, Ellen C Barton, Aurélie Martin, S.G. Ratu, Elizabeth Roberts, Philippe Phan, A Dyal, Joanne Rogers, Anne Henson, Neil Reid, Dermot Burke, G. Culleton, Sarah D. Lynne, Dermot Burke, Sufyan Mansoor, Caitlin W. Brennan, R. Blessed, Caroline L. Holloway, Arnold D. Hill, Thomas Goldsmith, Sharon Mackin, S Kim, Evelina Woin, Gregory A. Brent, Juli Coffin, Oliver J. Ziff, ZD Momoh, R. K. Debenham, Malik Irfan Ahmed, Cissy Yong, Jonathan Wan, Hannah Charlotte Copley, Pritish Raut, Faraz Chaudhry, R H Shuttleworth, G Nixon, Courtney Dorman, Ryan Choon Kiat Tan, S Kanabar, N. Canning, M. Dolaghan, Nicole S. Bell, Mary McMenamin, Ashok Chhabra, Kathryn Duke, Lindsay C. Turner, Tejal Patel, L S Chew, Mehdi Ali Mirza, Surabhika Lunawat, Babatunde Oremule, Nicholas T. Ward, M Khan, E. Tian Tan, David Roderick Maclennan, Richard McGregor, Elizabeth Chisholm, E J Griffin, Louise Bell, Belinda Hughes, J. Davies, Hafizul Haq, Hussien Ahmed, N. Ungcharoen, C. Whacha, R. Thethi, Rachel Markham, A H Y Lee, ER Batt, Nicholas Bullock, C.T. Francescon, J. Davies, Nusrat Shafiq, Jiashi Zhao, Sayinthen Vivekanantham, Ishani Barai, Jessica L. Allen, Dominic C Marshall, Charlotte McIntyre, Holly Wilson, Anita Ashton, C. Lek, Nebil Behar, M. Davis-Hall, N. Seneviratne, S Kim, Loïc Estève, Mert Sirakaya, S Ali, Scott D. Pope, Jaimo Ahn, Anna Craig-Mcquaide, W.A. Gatfield, Sharon E Leong, A.M. Demetri, Anne Kerr, Clare M. Rees, Jane Loveday, S Liu, Maheshi P C Wijesekera, Dipen M. Maru, Mark Attalla, Nicholas A. Smith, David Esteban Brown, P. Sritharan, Apar Shah, V. Charavanamuttu, G. Heppenstall-Harris, Kelvin K. Ng, T. Raghvani, Nick Rajan, K. Hulley, Nick Moody, Marli Williams, Arthur Cotton, Milad Sharifpour, Kaung Lwin, Melissa Bright, Abhishek Chitnis, Mohammed Abdel-Hadi, Akuilina Semana, Franklin G. Morgan, Rebecca Reid, Jane Dickson, Lorinda Anderson, Ronan McMullan, Jane Dickson, N Ahern, A Ahmad Asmadi, Lorinda Anderson, Jiabin Xuan, Lauren Crozier, Stephen McAleer, David Lees, AT Adebayo, Mautushi Das, Alexander Amphlett, A. Al-Robeye, Alice Valli, Jessi Khangura, A. Winarski, Ahmed Ali, Jessi Khangura, Helen Woodward, C Gouldthrope, Megan C. Turner, K Sasapu, Michael Tonkins, Jonathan Wild, Michael J. Robinson, J. Hardie, R. Heminway, Ruth Narramore, N. Ramjeeawon, A. D. Hibberd, Forrest Winslow, W Ho, Bradford Chong, Khong Hee Lim, Samuel B. Ho, J.A. Crewdson, S. Singagireson, Neeraj Kalra, Foteini Stefania Koumpa, H. I. Jhala, Wai Cheong Soon, Monil Karia, Michael Greshan Rasiah, Diamantis Xylas, Huburt Gilbert, M. Sundar-Singh, Jonathan Wills, Jameel Mushtaq, Sobia Akhtar, S. Patel, Liu Hu, Charlotte Brathwaite‐Shirley, H Nayee, Oreekha Amin, Tarun Rangan, E Turner, Catherine H McCrann, Rowan Forbes Shepherd, N Patel, J. Prest-Smith, Eric Y Auyoung, A. Murtaza, Amy Coates, O. Prys-Jones, Martin King, Stuart Gaffney, Charlotte Dewdney, I. Nehikhare, Jessica A. Lavery, John Bassett, Kirsty Davies, Kasim Ahmad, A Collins, Meghan Acres, Christine Egerton, T Khan, Ka Ho Cheng, X Chen, Nicholas Chan, A. Sheldon, S. Khan, J. Empey, Emily Ingram, Ali Raza Malik, Marianne Johnstone, R. Goodier, Jigar Shah, Julian Giles, Julie Sanders, Stewart McLure, Sridhar E. Pal, A. Rangedara, A Baker, C.A. Asbjoernsen, C. Girling, Lewis D Gray, L. Gauntlett, C Joyner, Sajid Qureshi, S Dean, Y.P. Mogan, James Ng, Aruna Kumar, J H Park, David Chi Hau Tan, K.P. Choo, Kausalya Raman, P. Buakuma, Chunhong Xiao, S. Govinden, Olof Thompson, M.A. Charalambos, Elliot John Brown, Rickesh Bharat Karsan, Tara Dogra, Laetitia Bullman, Pamela Dawson, Arthur L. Frank, Hèla Ben Abid, Li-Chen Tung, Umer Qureshi, A. Tahmina, Bruce Matthews, R. Harris, A. O'Connor, K. Mazan, Sundas Iqbal, Sophie Stanger, J. Thompson, Jacqueline A. Sullivan, E. Uppal, Ann Macaskill, F.A. Bamgbose, Christina Neophytou, Ashley Carroll, C.W. Rookes, Uttaran Datta, Amrita Dhutia, S Rashid, Nagm Eldin Abu Elnga Ahmed, Terence Lo, Shivam Bhanderi, Christopher Blore, S Ahmed, H. J. Shaheen, S Abburu, S. Majid, Zainab Fadhil Abbas, Sutopa Talukdar, S Ahmed, Laura Burney, Jamie Patel, O Al-Obaedi, Allison Roberts, O Al-Obaedi, Sophia Mahboob, Bhagwan D. Singh, Sangini S. Sheth, Priyesh Karia, A Prabhudesai, Kelvin Kow, Kantida Koysombat, S Wang, Paul J. Morrison, Y. Maheswaran, Philip Keane, Phillip Correia Copley, Oliver Brewster, Guan-Jie Xu, Phillip Harries, Carmel Wall, Alia Al-Mousawi, S. Bonsu, Pedro Cunha, Thomas Ward, Jerry Paul, K. Nadanakumaran, Salim Tayeh, Thomas Ward, H. Holyoak, Jéssica Remédios, K Theodoropoulou, Thomas Ward, A. Luhishi, Louis Jacob, Fang Long, Andrew Atayi, Safdar Sarwar, Olive Parker, Jessica Harvey, Heather Ross, Ritika Rampal, George Thomas, Piyush Vanmali, Catherine C. McGowan, John C. Stein, Vaila Robertson, L. Carthew, Vannesa Yue May Teng, J Fong, Anne Street, Clare Thakker, Derek O’Reilly, Mauro Bravo, Aline Cecília Pizzolato, Haseeb Anwar Khokhar, M. J. Ryan, Lindsay Cheskes, Richard D. Carr, Abdelmonim Salih, S. Bassiony, R. C. F. Yuen, David Chrastek, Hugh O׳Sullivan, Adaugo Amajuoyi, A Wang, O. Sitta, J. Wye, Mubasher A Qamar, C. Y. D. Major, Anjali Kaushal, Catrin Morgan, Maurizio Petrarca, R Allot, Kamlesh Verma, Shoma Dutt, R Allot, Chrissie Chilima, S Peroos, R Allot, Sumitro Kosasih, Hyung-Min Chin, L. Ashken, Rupert Pearse, Robert O'Loughlin, Arathi Menon, Kavindra Singh, Joel Norton, Rebecca Sagar, N. Jathanna, Lincoln Rothwell, Nicholas Watson, Floyd E. Harding, Pierre Dubé, Hassan Khalid, N Punjabi, Markus Sagmeister, Paul Gill, SM Hossain Shahid, Sarah Hudson-Phillips, D. George, J. Scott Ashwood, Thomas Lewis, Mahesh Shanker Dhar, P Sangal, I A Rhema, Dipak Kotecha, Richard H. Dean, Zeeshan Afzal, J.A. Syeed, Esha Prakash, Priya Jalota, Richard H. Dean, Jonathan Blair Thomas Herron, Lawrence M Kimani, A. Delport, Ayushi Shukla, Vani Agarwal, S R Raja Parthiban, Hena Thakur, W Cymes, S Rinkoff, Jennifer Turnbull, Muhammad Hayat, Sarah Darr, UA Khan, Jieqi Lim, Andrew Higgins, Gokul Lakshmipathy, Beniamino Forte, E. Canning, A. Jaitley, Jeffrey P. Lamont, Ethan Toner, Ali Ghaffar, Mark McDowell, Dominique Salmon, Pishoy Gouda, Orla O’Carroll, A Khan, Michael E. Kelly, Katherine Clesham, Cynthia S. Palmer, Rachel Lyons, Michael E. Kelly, Andrew M. Bell, Robin Chin, Ronan Waldron, Michael E. Kelly, Alan S. Trimble, Shanice Cox, Umair Ashfaq, Jill Campbell, Rachel Holliday, George P. McCabe, Frances Morris, R. Priestland, S Dean, Olivia Vernon, A. Ledsam, Rachel Vaughan, Diana Lim, Zoe Bakewell, Rebecca Hughes, R. Koshy, Hunter Jackson, P Narayan, Amy Cardwell, C.L. Jubainville, Tahera Arif, Lucy Elliott, Vidushi Gupta, Tahera Arif, Gayathri Bhaskaran, Kavindra Singh, Adenike Odeleye, Fiza Ahmed, Raahil Shah, Adenike Odeleye, Joe Pickard, Yasir Suleman, Adenike Odeleye, Alexander S North, Liusaidh McClymont, N Hussain, I. Ibrahim, Guat Shi Ng, V. Wai-Sun Wong, Alison Lim, L. Harris, T. Tharmachandirar, Devender Mittapalli, Vimal Patel, Midhat Lakhani, Natalie A. Davies, H.Z. Bazeer, Vishal Narwani, Kulmeet Sandhu, Laura R. Wingfield, Sarah Gentry, Helena Adjei, Muhammad Iqbal Bhatti, Lester Braganza, James R. Barnes, S. Mistry, G. Chillarge, Samantha Stokes, J. Cleere, S. Wadanamby, A.M. Bucko, James Meek, Naomi Boxall, Emily Heywood, Joanne Wiltshire, C. Toh, Alex Ward, Badrun Shurovi, T M Drake, Dillon Horth, Brij Patel, Baqar Ali, Todd Spencer, T. Axelson, L Kretzmer, C. Chhina, C Anandarajah, T. Fautz, Carolyn Horst, A.A. Thevathasan, Jason Ng, F. Hirst, Carole Brewer, Andrew Logan, Joseph Lockey, Paul Forrest, Nigel Keelty, Andrew Wood, Laurie Rigueros Springford, Pascale Avery, Therese Schulz, T.P. Bemand, Lara Howells, Hailey Collier, Apoorva Khajuria, Ravi Tharakan, Sarah Parsons, A M Buchan, Rachel McGalliard, John Mason, Olivia Cundy, N Li, Natalie Redgrave, Rgp Watson, Theodore Pezas, Y Dennis, Emma‐Tina Segall, Mansoor Hameed, Abigail Lynch, M. C. Chamberlain, F S Peck, Yan Ning Neo, George H. Russell, M Elseedawy, S Lee, Naomi Foster, Youn Soo, L. Puan, R Dennis, Harshita Goradia, A. Qureshi, Samah Ibrahim Omer Mohamed Osman Mohamed Osman, Thomas Reeves, L. Dinsmore, M Marsden, Qun Lü, T. Pitts-Tucker, Chris Dunn, Richard Walford, E. Jenny Heathcote, Robert C.G. Martin, Agamemnon Pericleous, K. Brzyska, Kern Reid, Marli Williams, Nick Wetherall, Eilish McAleer, D. Thomas, R S Kiff, C Gouldthrope, Stephanie Milne, M Holmes, Samantha Stokes, J Bartlett, J L ucas Carvalho, T Bloomfield, F. Tongo, Ronald Bremner, Yong Ning, B.A. Atraszkiewicz, A. Mehdi, Muhammad Rizwan Tahir, G.X.J. Sherliker, Anne Tear, Amita Pandey, A. Broyd, Hisham Omer, Martine Raphaël, W.W. Chaudhry, Shayan Shahidi, Ahmed Jawad, Charn Gill, Ingo Fisher, I. Adeleja, Ian Clark, G. Aidoo-Micah, Philip W. Stather, Gazbar Salam, Thomas E. Glover, Gavin Deas, N K Sim, R.D. Obute, William Wynell-Mayow, M S Sait, N. Mitha, G Bernier, Muhammad Bilal Siddiqui, Raghav Shaunak, Anuj Wali, Gavin Cuthbert, Roshni Bhudia, Elizabeth M. Webb, Sanjay Shah, Nabila Ansari, M. Thamara P. R. Perera, Neil E. Kelly, Ross McAllister, Guy Stanley, Colm Keane, Veeranna Shatkar, C. Maxwell‐Armstrong, LM Henderson, Natalie Maple, Roberto R. Manson, R. Adams, Elliot John Brown, Elisabeth Semple, Marcos Mills, Ahmed Daoub, A. Marsh, A. Ramnarine, J. Hartley, Marta Malaj, Paul Jewell, E.A. Whatling, Nadia Hitchen, M Chen, Brian K.P. Goh, Juliana Fern, Sophie Rogers, Laura Derbyshire, David Robertson, N Abuhussein, Praveena Deekonda, Amer Abid, Ali Bakhsh, Peter Harrison, L. Aildasani, Hannah Turley, Mohamed Sherif, Gargi Pandey, Joseph Filby, Andrew James Johnston, Éilish Burke, Mohamed Farah Yusuf Mohamud, Kajal Gohil, A Tsui, Rajdeep Singh, Shujing Jane Lim, Karen O’Sullivan, L.L. McKelvey, Stephen O’Neill, Helen Roberts, F S Brown, Yun Cao, Rory T Buckle, Yao Ren Liew, Samuel S.Y. Sii, Chiara Ventre, Christopher Graham, Teodora Filipescu, Abdallah Yousif, Reetika Dawar, Andrea Wright, Miriam Peters, Rebecca Varley, Sebastian Owczarek, Simon Hartley, Malak Nawaz Khan Khattak, Atif Iqbal, M Ali, B Durrani, Yajur Narang, George Bethell, Laura Horne, Raquel Pinto, Kathleen Nicholls, Ivan Kisyov, Hew D.T. Torrance, Panna Patel, M Patel, William English, Shan Lakhani, S. Ashraf, Mary L Venn, V. Elangovan, Zehra Kazmi, Joanna Brecher, Shyam Sukumar, Adnan Mastan, Alice Mortimer, Jennifer Parker, J Boyle, M Elkawafi, Jeffrey M. Beckett, Ajay Mohite, Aditya Narain, Eshan Mazumdar, A. Sreh, Amy Hague, Daniel H. Weinberg, Laura Fletcher, Malcolm Steel, Hannah Shufflebotham, Mariam Masood, Yash Sinha, H. Amin, C Jenvey, H. Kitt, Ruth Slade, Ashley Craig, Ciara Deall, Yash Sinha, Joseph Gabriel, T. Reakes, Jordan V. Chervenkoff, E Strange, Moira K O’Bryan, Charlotte Murkin, D Joshi, E Strange, Tara Bergara, S. Naqib, D. Wylam, E Strange, S. Scotcher, Christopher Hewitt, Michael Stoddart, Ashwin Kerai, Adam Joseph Trist, S. Cole, Cathryn Knight, Samuel Stevens, Graham Cooper, Rory Ingham, Judith Dobson, Joanne Wylie, A O'Kane, Jalal Moradzadeh, Allyson Duffy, C. Henderson, S. Ashraf, C. McLaughin, Toby Hoskins, R Reehal, Lucy R. Bookless, Ross McLean, Emily Stone, E. Wright, H Abdikadir, Charlotte Roberts, Olivia Spence, Mukunthan Srikantharajah, M Patel, Eduardo Montero Ruiz, J. H. Matthews, Elizabeth C. Gardner, Charlotte Roberts, E. Kelly Hester, Prasheena Naran, R Simpson, Meenu Minhas, Emily F. Cornish, SH Semnani, Djamila Rojoa, A Radotra, John Eraifej, K. Eparh, Daniel Smith, Bhavin Mistry, Siobhan Hickling, Aneel Bhangu, W. Din, C Liu, Pryankaran Mithrakumar, V. Mirdavoudi, Madeeha Rashid, Clare McGenity, O. Hussain, M Kadicheeni, Hannah Gardner, N. Anim-Addo, Jack C.H. Pearce, Alec Aslanyan, Chara Ntala, T. Sorah, J. Parkin, mohamad alizadeh, Andrew A. White, F. Edozie, J.H. Johnston, A.G. Abdul Kahar, V. Navayogaarajah, Brij Patel, D Carter, Parisa Khonsari, Andrea Burgess, Brij Patel, Chia Kong, Arachchige Ponweera, A. Cody, Yulin Tan, AYKC Ng, A. Croall, Catherine K. Allan, S Ng, V Raghuvir, Richard J. Telfer, Arran Greenhalgh, Caroline McKerr, Marie Alexandra Edison, Bhavin Patel, K L Dear, Myra Hardy, P. Williams, Shamira Hassan, Uzma Sajjad, Eoghan O’Neill, Sofia Jarjour Tavares Starling Lopes, Laura Healy, Norhadziana Jamal, S Tan, D. Lazenby, S.B. Husnoo, Simon Beecroft, T. Sarvanandan, Christina G. Weston, N Bassam, S. Rabinthiran, Umar Hayat, Lauren C. Ng, D. G. Varma, Mohamad Sukkari, Ayesa Mian, Amy Coates, Al Fazir Omar, J W Kim, Amy Coates, Jenardan Sellathurai, Javed Iqbal Mahmood, Casey L. O’Connell, Ruma Bose, Helen Heneghan, Peter Lalor, Jesse Matheson, C C Doherty, Caroline Cullen, David J. Cooper, Sophia Angelov, C. Drislane, Andrew C. Smith, A. Kreibich, Ebrahim Palkhi, Andrya J. Durr, Andrew Lotfallah, David Gold, Erin L. McKean, Andrya J. Durr, Al-Rehan Dhanji, Anilkumar Av, Amitabh Thacoor, Andrya J. Durr, Zohaib Siddiqui, S. Lim, Amand Piquet, Shelly Anderson, Anurag Jindal, Darren McCormack, Jayati Gulati, Arwa Ibrahim, Anurag Jindal, Scott Murray, Stewart Walsh, Anika L. McGrath, Paul Ziprin, Eddy Chua, Chong-yang Lou, Joseph R. Bloomer, Heidi Paine, Denise Osei-Kuffour, Carla White, A Szczap, Shyam Gokani, Kiran Klaus Patel, M.K. Malys, Anthony Reed, G.E. Torlot, Elspeth Cumber, Amynah Charania, Siddique Ahmad, Niraj Varma, Haider R. Cheema, L. Austreng, H. Petra, Muhammad Hamid Chaudhary, Menen Zegeye, Frances K. Cheung, Douglas Coffey, R. Heer, Sweta Singh, Emilie Seager, S Cumming, Rishi Suresh, Saurabh Verma, Imogen Ptacek, Adam Gwozdz, Tianqin Yang, Ayush Khetarpal, Syed Shumon, Teresa Fung, William Chun-yin Leung, P. C. Kwang, L S Chew, Wayren Loke, Alan J. Curran, Carlos Chan, Christine McGarrigle, Kunal Mohan, Sean P. Cullen, Enoch Wong, Conor Toale, D. Collins, Niamh Keane, B P Traynor, D. Shanahan, Angela Yan, Daniyal J. Jafree, C Topham, Stefan Mitrasinovic, Sharif Omara, Buket Gundogan, Gordon Bingham, Panagis M. Lykoudis, B.H. Miranda, Katharine Whitehurst, Geev Kumaran, Yadsan Devabalan, Humaira Aziz, M. Shoa, Shiva Dindyal, Jonathan Yates, Isaac A. Bernstein, Gurender Rattan, Jonathan Yates, R. Coulson, S. Stezaker, A Isaac, Menatalla Salem, Angela McBride, A Isaac, H. McFarlane, L. Yow, Jonathan Macdonald, Richard D. Bartlett, Sanchit Turaga, Ursula White, Wan Jane Liew, Nicholas H. Yim, Andrew Ang, Andrew Simpson, Daniel F. McAuley, Elaine Craig, Lorna Murphy, Peter Shepherd, Jim Kee, A Abdulmajid, Arlene E. Chung, Hunter Warwick, Alana Livesey, Patrick Holton, Mark D Theodoreson, S.L. Jenkin, J. Turner, Jonathan Entwisle, Stéphane Marchal, S. O'Connor, Harry Blege, Joanna M S Aithie, Leh Sabine, G.E. Stewart, S. Jackson, A. Kishore, C.M. Lankage, F Acquaah, Holly Joyce, Anurag Jindal, Kevin McKevitt, Calvin Coffey, Ahmad Fawaz, Katelyn Dolbec, Donnchadh O’Sullivan, J Geraghty, Eric Lim, Linda Burnes Bolton, Deirdre Fitzpatrick, Caitlin Robinson, T. Ramtoola, Sophie Collinson, L Grundy, Paul McEnhill, Gurvinder Singh Harbhajan Singh, Dafydd Loughran, David Golding, R.E. Keeling, Robert P. Williams, Robert Whitham, Sangeetha Yoganathan, R. Nachiappan, Richard Egan, Raisah Owasil, Marilyn L. Kwan, Aina He, Ruth Goh, Rahul Bhome, Holly Wilson, Penelope J. Teoh, Kabiru A. Raji, Thomas Reeves, Nimeshi Jayakody, J. Matthams, Julien Chong, S Tan, CW Luk, Robert Greig, Matthew Trail, George Charalambous, Vanushia Thirumal, Alistair Rocke, N Gardiner, F. A. Bulley, Nicole Warren, Emma Brennan, P. Fergurson, Rebekah Wilson, Heather Whittingham, Elliot John Brown, Rashmi Khanijau, Kejal Gandhi, Steve Morris, A Boulton, Nakul Chandan, A.E. Barthorpe, Ricardo Maamari, Shahneen Sandhu, Michael McCann, Lawrence M. Higgs, V Balian, Craig B. Reeder, Charles Diaper, V Balian, T. A. Sale, Hosam Fathy Ali, V Balian, Carolyn Archer, Anne Clarke, Joseph Heskin, P Hurst, Joel D. Farmer, Lauren O’Flynn, Lan Ðoàn, B A Shuker, G. Stott, N.A. Vithanage, Katie Hoban, P.N. Nesargikar, Helen Kennedy, Cathleen Grossart, Eunicia Tan, Chloe Roy, Pei Yin Sim, Kate Leslie, D P Y Sim, Mehtap Haktanır Abul, Neil Md Cody, Andrea Tay, E Woon, Saretta Sng, Jin Jiun Mah, John Robson, Eathar Shakweh, Victoria C. Wing, Harriet L. Mills, M M Li, Tina Barrow, Sathyan Balaji, Helen Jordan, C. Phillips, Hania Naveed, Shashivadan P. Hirani, A. Tai, Raguprakash Ratnakumaran, A. Sahathevan, Ahmed Mohamed Abdel Shafì, M. A. Seedat, Rupert Weaver, A Batho, R. Punj, Haran Selvachandran, Neel K. Bhatt, S. Botchey, Z. Khonat, Kiva Brennan, Kenneth Ong, Clare Morrison, Eimar Devlin, Anna Linton, Elizabeth Galloway, Susan McGarvie, Norma K.C. Ramsay, H D McRobbie, Harriet Whewell, William H. Dean, S. Nelaj, Mazin Eragat, Aseem Mishra, Tajinder Kane, Mohamed Zuhair, M. Wells, David Wilkinson, N P Woodcock, Elizabeth Sun, Nora Abdul Aziz, Momin Ghaffar
Software Mentions: 10
Published: over 9 years ago

10.3389/fbioe.2019.00257

The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Mesothelioma With Bone Metastasis
Cited by: 23
Author(s): Runzhi Huang, Jiawen Wu, Zixuan Zheng, Guanghua Wang, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Haiyun Wang, Qi Lv, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 9
Published: over 6 years ago

10.1186/s12859-020-03703-2

SQMtools: automated processing and visual analysis of ’omics data with R and anvi’o
Cited by: 25
Author(s): Fernando Puente-Sánchez, Natalia García-García, Javier Tamames
Software Mentions: 9
Published: over 5 years ago

10.1042/BSR20202898

Comprehensive analysis reveals a prognostic and therapeutic biomarker CD3D in the breast carcinoma microenvironment
Cited by: 13
Author(s): Zhipeng Zhu, Weipeng Ye, Xiaofang Wu, Sihao Lin, Jiuhua Xu, Lulu Li, Jiayi Li, Haibin Wang, Zhengjie Huang
Software Mentions: 9
Published: about 5 years ago

10.1186/s12859-017-1651-7

Zipper plot: visualizing transcriptional activity of genomic regions
Cited by: 5
Author(s): Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh
Software Mentions: 9
Published: almost 9 years ago

10.1111/1744-7917.12606

The price of protection: a defensive endosymbiont impairs nymph growth in the bird cherry‐oat aphid, Rhopalosiphum padi
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Author(s): Daniel J. Leybourne, Jorunn I. B. Bos, Tracy A. Valentine, Alison J. Karley
Software Mentions: 9
Published: over 7 years ago

10.3389/fdata.2020.00015

Improving Diagnosis of Depression With XGBOOST Machine Learning Model and a Large Biomarkers Dutch Dataset (n = 11,081)
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Author(s): Amita Sharma, W. Verbeke
Software Mentions: 9
Published: almost 6 years ago

10.3390/ijms22073411

Insights of Phenolic Pathway in Fruits: Transcriptional and Metabolic Profiling in Apricot (Prunus armeniaca)
Cited by: 6
Author(s): Helena Gómez-Martínez, Francisco Gil-Muñoz, Almudena Bermejo, Elena Zuriaga, M. L. Badenes
Software Mentions: 9
Published: almost 5 years ago

10.3390/ijms22063200

Identification of Transcriptomic Differences between Lower Extremities Arterial Disease, Abdominal Aortic Aneurysm and Chronic Venous Disease in Peripheral Blood Mononuclear Cells Specimens
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Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Przemysław Kołodziej, Jolanta Szymańska, Bartosz J. Płachno, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 9
Published: almost 5 years ago

10.3389/fnbeh.2020.00088

The Influence of Reward on Facial Mimicry: No Evidence for a Significant Effect of Oxytocin
Cited by: 5
Author(s): Irene Trilla, Hanna Drimalla, Malek Bajbouj, Isabel Dziobek
Software Mentions: 9
Published: over 5 years ago

10.1186/s13059-021-02374-3

The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle
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Author(s): Mayra Furlan-Magaril, Masami Ando-Kuri, Rodrigo G. Arzate-Mejía, Jörg Morf, Jonathan Cairns, Abraham Román-Figueroa, Luis Tenorio-Hernández, Augusto César Poot-Hernández, Simon Andrews, Csilla Várnai, Boo Virk, Steven Wingett, Peter Fraser
Software Mentions: 9
Published: over 4 years ago

10.1186/s12859-016-1323-z

variancePartition: interpreting drivers of variation in complex gene expression studies
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Author(s): Gabriel E. Hoffman, Eric E. Schadt
Software Mentions: 9
Published: about 9 years ago

10.1007/s00040-018-0624-9

The gut microbiome is associated with behavioural task in honey bees
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Author(s): Julia C. Jones, Carmelo Fruciano, J. H. Marchant, Falk Hildebrand, Kristoffer Forslund, Peer Bork, Philipp Engel, William O. Hughes
Software Mentions: 9
Published: over 7 years ago

10.1186/s13059-020-02141-w

Improved reference genome of the arboviral vector Aedes albopictus
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Author(s): Umberto Palatini, Reem A. Masri, Luciano V. Cosme, Sergey Koren, Françoise Thibaud‐Nissen, James K. Biedler, Flávia Krsticevic, J. Spencer Johnston, Rebecca Halbach, Jacob E. Crawford, Igor Antoshechkin, Anna‐Bella Failloux, Elisa Pischedda, Michele Marconcini, Jay Ghurye, Arang Rhie, Atashi Sharma, Д. А. Карагодин, James Jenrette, Stephanie Gamez, Pascal Miesen, Patrick Masterson, Adalgisa Caccone, Maria V. Sharakhova, Zhijian Tu, Philippos Aris Papathanos, Ronald P. van Rij, Omar S. Akbari, Jeffrey R. Powell, Adam M. Phillippy, Mariangela Bonizzoni
Software Mentions: 9
Published: over 5 years ago

10.3390/ijms22116160

Spatially Enriched Paralog Rearrangements Argue Functionally Diverse Ribosomes Arise during Cold Acclimation in Arabidopsis
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Author(s): Federico Martinez‐Seidel, Olga Beine-Golovchuk, Yin-Chen Hsieh, Kheloud El Eshraky, Michał Górka, Bo-Eng Cheong, Erika Vanessa Jiménez-Posada, Dirk Walther, Aleksandra Skirycz, Ute Roessner, Joachim Kopka, Alexandre Augusto Pereira Firmino
Software Mentions: 9
Published: over 4 years ago

10.3390/ijms21134763

The Differential Effect of Carbon Dots on Gene Expression and DNA Methylation of Human Embryonic Lung Fibroblasts as a Function of Surface Charge and Dose
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Author(s): Michal Šíma, Kristýna Vrbová, Táňa Závodná, K. Hoňková, Irena Chvojková, Antonín Ambrož, Jǐŕı Kléma, Andrea Rössnerová, Kateřina Poláková, Tomáš Malina, Jan Belza, Jan Topinka, Pavel Rőssner
Software Mentions: 9
Published: over 5 years ago

10.1002/ece3.5309

Evidence of strong stabilizing effects on the evolution of boreoeutherian (Mammalia) dental proportions
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Author(s): Tesla A. Monson, Jean‐Renaud Boisserie, Marianne F. Brasil, Selene M. Clay, Rena R. Dvoretzky, Shruti Ravindramurthy, Christopher A. Schmitt, Antoine Souron, Risa Takenaka, Peter S. Ungar, Sunwoo Yoo, Michael Zhou, Madeleine E. Zuercher, Leslea J. Hlusko
Software Mentions: 9
Published: over 6 years ago

10.3390/microorganisms9061313

Influential Insider: Wolbachia, an Intracellular Symbiont, Manipulates Bacterial Diversity in Its Insect Host
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Author(s): Morgane Ourry, Agathe Crosland, Valérie Lopez, Stéphane A. P. Derocles, Christophe Mougel, Anne‐Marie Cortesero, Denis Poinsot
Software Mentions: 9
Published: over 4 years ago

10.18632/aging.202748

Development and validation of routine clinical laboratory data derived marker-based nomograms for the prediction of 5-year graft survival in kidney transplant recipients
Cited by: 0
Author(s): Yamei Li, Yan Lin, Yang Li, Zhengli Wan, Yang Bai, Xianding Wang, Shumeng Hu, Xiaojuan Wu, Cuili Yang, Jiwen Fan, Hong‐Xi Xu, Lanlan Wang, Ying Shi
Software Mentions: 9
Published: almost 5 years ago

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