Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-03703-2

https://doi.org/10.1186/s12859-020-03703-2

SQMtools: automated processing and visual analysis of ’omics data with R and anvi’o

Cited by: 25
Author(s): Fernando Puente-Sánchez, Natalia García-García, Javier Tamames
Published: over 4 years ago

Software Mentions 9

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: pathview

a tool set for pathway based data integration and visualization
Papers that mentioned: 144

cran: caret

Classification and Regression Training
Papers that mentioned: 630

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: vegan

Community Ecology Package
Papers that mentioned: 6,903

pypi: caret

A Python Interface to Asterisk
Papers that mentioned: 630

pypi: conda

OS-agnostic, system-level binary package manager.
Papers that mentioned: 92

pypi: o

Get operator information.
Papers that mentioned: 37

pypi: STAMP

A graphical software package for analyzing taxonomic and functional profiles.
Papers that mentioned: 1,190