Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-016-1323-z

https://doi.org/10.1186/s12859-016-1323-z

variancePartition: interpreting drivers of variation in complex gene expression studies

Cited by: 390
Author(s): Gabriel E. Hoffman, Eric E. Schadt
Published: almost 8 years ago

Software Mentions 9

bioconductor: ballgown
Flexible, isoform-level differential expression analysis
Papers that mentioned: 21
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
bioconductor: variancePartition
Quantify and interpret drivers of variation in multilevel gene expression experiments
Papers that mentioned: 25
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071