Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-016-1323-z
https://doi.org/10.1186/s12859-016-1323-z
Cited by: 390
Author(s): Gabriel E. Hoffman, Eric E. Schadt
Published: over 7 years ago
Software Mentions 9
bioconductor: ballgown
Flexible, isoform-level differential expression analysisPapers that mentioned: 21
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisPapers that mentioned: 367
bioconductor: variancePartition
Quantify and interpret drivers of variation in multilevel gene expression experimentsPapers that mentioned: 25
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071