Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.7035.1

https://doi.org/10.12688/f1000research.7035.1

Cited by: 253
Author(s): Michael I. Love, Simon Anders, Vladislav Kim, Wolfgang Huber
Published: over 8 years ago

Software Mentions 9

bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: ReportingTools
Tools for making reports in various formats
Papers that mentioned: 6
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: ggplot
ggplot for python
Papers that mentioned: 796