Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 1 year ago
3 dependent packages
1,891 downloads last month
Papers Mentioning Andromeda 1,724
10.3389/fimmu.2021.616967
A Multi-Omics Analysis of Mucosal-Associated-Invariant T Cells Reveals Key Drivers of Distinct Modes of ActivationCited by: 12
Author(s): Kristin Schubert, Isabel Karkossa, Jana Schor, Beatrice Engelmann, Lisa Maria Steinheuer, Tony Bruns, Ulrike Rolle-Kampczyk, Jörg Hackermüller, Martin von Bergen
Software Mentions: 24
Published: over 3 years ago
10.15252/msb.20199247
<i> <scp>STAT</scp> 3 </i> ‐dependent analysis reveals <i> <scp>PDK</scp> 4 </i> as independent predictor of recurrence in prostate cancerCited by: 34
Author(s): Monika Oberhuber, Matteo Pecoraro, Mate Rusz, Georg Oberhuber, Maritta Wieselberg, Peter Haslinger, Elisabeth Gurnhofer, Michaela Schlederer, Tanja Limberger, Sabine Lagger, Jan Pěnčík, Petra Kodajova, Sandra Högler, Georg Stockmaier, Sandra Grund-Gröschke, Fritz Aberger, Marco Bolis, Jean-Philippe Theurillat, Robert Wiebringhaus, Theresa R. Weiss, Andrea Haitel, Marc Brehme, Wolfgang Wadsak, Johannes Griss, Thomas Mohr, Alexandra Hofer, Anton Jäger, Jürgen Pollheimer, Gerda Egger, Gunda Koellensperger, Matthias Mann, Brigitte Hantusch, Lukas Kenner
Software Mentions: 21
Published: over 4 years ago
10.1016/j.molcel.2021.05.023
Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infectionCited by: 87
Author(s): Wael Kamel, Marko Noerenberg, Berati Cerikan, Honglin Chen, Aino I Järvelin, Mohamed Kammoun, Young Seok Lee, Shuai Ni, Manuel García-Moreno, Anna Andrejeva, Michael J. Deery, Natasha Johnson, Christopher J Neufeldt, Mirko Cortese, Michael Knight, Kathryn S. Lilley, Javier Martı̂nez, Ilan Davis, Ralf Bartenschlager, Shabaz Mohammed, Alfredo Castelló
Software Mentions: 18
Published: over 3 years ago
10.1186/s40168-020-00914-w
Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipientsCited by: 118
Author(s): Alfonsina D’Amato, Lorenzo Mannelli, Elena Lucarini, Angela L. Man, Gwénaëlle Le Gall, Jacopo Junio Valerio Branca, Carla Ghelardini, Amedeo Amedei, Eugenio Bertelli, Marì Regoli, Alessandra Pacini, Giulia Luciani, Pasquale Gallina, Annalisa Altera, Arjan Narbad, Massimo Gulisano, Lesley Hoyles, David Vauzour, Claudio Nicoletti
Software Mentions: 14
Published: about 4 years ago
10.3390/ijms20174162
SILAC-Based Quantification of TGFBR2-Regulated Protein Expression in Extracellular Vesicles of Microsatellite Unstable Colorectal CancersCited by: 13
Author(s): Fabia Fricke, Malwina Michalak, Uwe Warnken, Ingrid Haußer, Martina Schnölzer, Jürgen Kopitz, Johannes Gebert
Software Mentions: 14
Published: about 5 years ago
10.3390/cancers12030692
Hypoxia-Induced Adaptations of miRNomes and Proteomes in Melanoma Cells and Their Secreted Extracellular VesiclesCited by: 29
Author(s): Geoffroy Walbrecq, Odile Lecha, Anthoula Gaigneaux, Miriam Rebecca Fougeras, Demetra Philippidou, Christiane Margue, Miléne Tetsi Nomigni, François Bernardin, Gunnar Dittmar, Iris Behrmann, Stephanie Kreis
Software Mentions: 11
Published: over 4 years ago
10.1186/s40478-018-0548-7
Proteomic analysis of Medulloblastoma reveals functional biology with translational potentialCited by: 35
Author(s): Samuel Rivero-Hinojosa, Ling San Lau, Mojca Stampar, Jerome A. Staal, Huizhen Zhang, Heather Gordish‐Dressman, Paul A. Northcott, Stefan M. Pfister, Michael D. Taylor, Kristy J. Brown, Brian R. Rood
Software Mentions: 10
Published: over 6 years ago
10.1371/journal.ppat.1007945
Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotypeCited by: 28
Author(s): Bernd Hommel, Aude Sturny-Leclère, Stevenn Volant, Nathanaël Veluppillai, Magalie Duchateau, Chen-Hsin Albert Yu, Véronique Hourdel, Hugo Varet, Mariette Matondo, John R. Perfect, Arturo Casadevall, Françoise Dromer, Alexandre Alanio
Software Mentions: 10
Published: over 5 years ago
10.3389/fpls.2014.00078
Plasma membrane lipid–protein interactions affect signaling processes in sterol-biosynthesis mutants in Arabidopsis thalianaCited by: 24
Author(s): Henrik Zauber, Asdrúbal Burgos, Prashanth Garapati, Waltraud X. Schulze
Software Mentions: 9
Published: over 10 years ago
10.1038/s41598-020-72569-4
Abiotic and past climatic conditions drive protein abundance variation among natural populations of the caddisfly Crunoecia irrorataCited by: 2
Author(s): Joshua Niklas Ebner, Danilo Ritz, Stefanie von Fumetti
Software Mentions: 9
Published: about 4 years ago
10.1371/journal.pone.0199274
Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in ratsCited by: 25
Author(s): Boris Zybailov, Galina Glazko, Yasir Rahmatallah, Dmitri S. Andreyev, Taylor McElroy, Oleg Karaduta, Stephanie D. Byrum, Lisa Orr, Alan J. Tackett, Samuel G. Mackintosh, Ricky D. Edmondson, Dorothy A. Kieffer, Roy J. Martin, Sean H. Adams, Nosratola D. Vaziri, John M. Arthur
Software Mentions: 9
Published: almost 6 years ago
10.15252/msb.20188503
A deep proteome and transcriptome abundance atlas of 29 healthy human tissuesCited by: 479
Author(s): Dongxue Wang, Basak Eraslan, Thomas Wieland, Björn M. Hallström, Thomas A. Hopf, Daniel Paul Zolg, Jana Zecha, Anna Asplund, Lihua Li, Chen Meng, Martin Frejno, Tobias Schmidt, Karsten Schnatbaum, Mathias Wilhelm, Fredrik Pontén, Mathias Uhlén, Julien Gagneur, Hannes Hahne, Bernhard Küster
Software Mentions: 8
Published: almost 6 years ago
10.15252/emmm.202012871
Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkersCited by: 40
Author(s): Christoph H. Mayr, Lukas M. Simon, Gabriela Leuschner, Meshal Ansari, Janine Schniering, Philipp Geyer, Ilias Angelidis, Maximilian Strunz, Pawandeep Singh, Nikolaus Kneidinger, Frank Reichenberger, Edith Silbernagel, Stephan Böhm, Heiko Adler, Michael Lindner, Britta Maurer, Anne Hilgendorff, Antje Prasse, Jürgen Behr, Matthias Mann, Oliver Eickelberg, Fabian J. Theis, Herbert B. Schiller
Software Mentions: 8
Published: over 3 years ago
10.3390/molecules26123564
Differential Glycosite Profiling—A Versatile Method to Compare Membrane GlycoproteomesCited by: 0
Author(s): Malwina Michalak, Martin Simon Kalteis, Aysel Ahadova, Matthias Kloor, Mark Kriegsmann, Katharina Kriegsmann, Uwe Warnken, Dominic Helm, Jürgen Kopitz
Software Mentions: 8
Published: over 3 years ago
10.1186/1471-2164-13-556
Proteome remodelling during development from blood to insect-form Trypanosoma brucei quantified by SILAC and mass spectrometryCited by: 117
Author(s): Kapila Gunasekera, Daniel Wüthrich, Sophie Braga-Lagache, Manfred Heller, Torsten Ochsenreiter
Software Mentions: 8
Published: about 12 years ago
10.1016/j.devcel.2017.07.002
The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence TranscriptionCited by: 59
Author(s): Alper Akay, Tomás Di Domenico, Kin Man Suen, Amena Nabih, Guillermo E. Parada, Mark Larance, Ragini Medhi, Ahmet C. Berkyurek, Xinlian Zhang, Christopher J. Wedeles, Konrad L. M. Rudolph, Jan Engelhardt, Martin Hemberg, Ping Ma, Angus I. Lamond, Julie M. Claycomb, Eric A. Miska
Software Mentions: 7
Published: over 7 years ago
10.15252/msb.20188689
Defining the <scp>RNA</scp> interactome by total <scp>RNA</scp> ‐associated protein purificationCited by: 103
Author(s): Vadim Shchepachev, Stefan Bresson, Christos Spanos, Elisabeth Petfalski, Lutz Fischer, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: over 5 years ago
10.15252/embj.2020105565
The RNA polymerase II subunit RPB‐9 recruits the integrator complex to terminate <i>Caenorhabditis elegans</i> piRNA transcriptionCited by: 13
Author(s): Ahmet C. Berkyurek, Giulia Furlan, Lisa Lampersberger, Toni Beltran, Eva-Maria Weick, Emily Nischwitz, Isabela Cunha Navarro, Fabian Braukmann, Alper Akay, Jonathan Price, Falk Butter, Peter Sarkies, Eric A. Miska
Software Mentions: 7
Published: almost 4 years ago
10.7554/eLife.30952
Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammalsCited by: 158
Author(s): Inge Kühl, María Miranda, Ilian Atanassov, Irina Kuznetsova, Yvonne Hinze, Arnaud Mourier, Aleksandra Filipovska, Nils‐Göran Larsson
Software Mentions: 7
Published: about 7 years ago
10.1016/j.molcel.2019.01.017
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus InfectionCited by: 122
Author(s): Manuel García-Moreno, Marko Noerenberg, Shuai Ni, Aino I Järvelin, Esther González-Almela, Caroline E. Lenz, Marcel Bach-Pagés, Victoria Cox, Rosario Avolio, Thomas W. Davis, Svenja Hester, Thibault J.M. Sohier, Bingnan Li, Gregory Heikel, Gracjan Michlewski, Miguel Á. Sanz, Luís Carrasco, Emiliano P. Ricci, Vicent Pelechano, Ilan Davis, Bernd Fischer, Shabaz Mohammed, Alfredo Castelló
Software Mentions: 7
Published: over 5 years ago
10.1016/j.molcel.2020.01.007
Mammalian RNA Decay Pathways Are Highly Specialized and Widely Linked to TranslationCited by: 74
Author(s): Alex Tuck, Aneliya Rankova, Alaaddin Bulak Arpat, Luz Angélica Liechti, Daniel Heß, Vytautas Iešmantavičius, Violeta Castelo-Szekely, David Gatfield, Marc Bühler
Software Mentions: 7
Published: over 4 years ago
10.26508/lsa.201800085
Transcriptional repression by FACT is linked to regulation of chromatin accessibility at the promoter of ES cellsCited by: 29
Author(s): Constantine Mylonas, Peter Tessarz
Software Mentions: 7
Published: over 6 years ago
10.1016/j.molcel.2020.09.021
Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation FactorsCited by: 49
Author(s): Stefan Bresson, Vadim Shchepachev, Christos Spanos, Tomasz W. Turowski, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: about 4 years ago
10.3389/fimmu.2020.578505
Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human LifeCited by: 18
Author(s): Tue Bjerg Bennike, Benoit Fatou, Asimenia Angelidou, Joann Diray‐Arce, Reza Falsafi, Rebecca Ford, Erin E. Gill, Simon D. van Haren, Olubukola T. Idoko, Ahwon Lee, Rym Ben‐Othman, William Pomat, Casey P. Shannon, Kinga K. Smolen, Scott J. Tebbutt, Al Ozonoff, Peter Richmond, Anita H. J. van den Biggelaar, Robert E. W. Hancock, Beate Kampmann, Tobias R. Kollmann, Ofer Levy, Hanno Steen
Software Mentions: 7
Published: about 4 years ago
10.1016/j.jprot.2018.08.013
Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growthCited by: 29
Author(s): Dwight R. Causey, Jin-Hyoung Kim, David Stead, Samuel Martín, Robert H. Devlin, Daniel J. Macqueen
Software Mentions: 7
Published: almost 6 years ago
10.1186/s13059-017-1321-0
The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loadingCited by: 55
Author(s): Roberta Tarallo, Giorgio Giurato, Giuseppina Bruno, Maria Ravo, Francesca Rizzo, Annamaria Salvati, Luca Ricciardi, Giovanna Marchese, Angela Cordella, Teresa Rocco, Valerio Gigantino, Biancamaria Pierri, Giovanni Cimmino, Luciano Milanesi, Concetta Ambrosino, Tuula A. Nyman, Giovanni Nassa, Alessandro Weisz
Software Mentions: 6
Published: about 7 years ago
10.1186/s12983-019-0312-2
Metabolic reprogramming involving glycolysis in the hibernating brown bear skeletal muscleCited by: 30
Author(s): Blandine Chazarin, Kenneth B. Storey, Anna Ziemianin, Stéphanie Chanon, Marine Plumel, Isabelle Chery, Christine Durand, Alina L. Evans, Jon M. Arnemo, Andreas Zedrosser, Jon E. Swenson, Guillemette Gauquelin‐Koch, Chantal Simon, Stéphane Blanc, Étienne Lefai, Fabrice Bertile
Software Mentions: 6
Published: over 5 years ago
10.1016/j.jbc.2021.100877
The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brainCited by: 4
Author(s): Edwin B. Corgiat, Sara M. List, J. Christopher Rounds, Anita H. Corbett, Kenneth H. Moberg
Software Mentions: 6
Published: over 3 years ago
10.1083/jcb.201612131
Nuclear phosphorylated Dicer processes double-stranded RNA in response to DNA damageCited by: 67
Author(s): Kaspar Burger, Margarita Schlackow, Martin Potts, Svenja Hester, Shabaz Mohammed, Monika Gullerová
Software Mentions: 6
Published: over 7 years ago
10.1186/gb-2013-14-2-r16
A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regenerationCited by: 104
Author(s): Mario Looso, Jens Preussner, Konstantinos Sousounis, Marc Bruckskotten, Christian Michel, Ettore Lignelli, Richard Reinhardt, Sabrina Höffner, Marcus Krüger, Panagiotis A. Tsonis, Thilo Borchardt, Thomas Braun
Software Mentions: 6
Published: almost 12 years ago
10.1016/j.celrep.2020.108545
CDK8 Fine-Tunes IL-6 Transcriptional Activities by Limiting STAT3 Resident Time at the Gene LociCited by: 23
Author(s): Jonathan Martínez-Fábregas, Luopin Wang, Elizabeth Pöhler, Adeline Cozzani, Stephan Wilmes, Majid Kazemian, Suman Mitra, Ignacio Moraga
Software Mentions: 6
Published: almost 4 years ago
10.1038/s41598-021-89531-7
Reconstruction of the miR-506-Quaking axis in Idiopathic Pulmonary Fibrosis using integrative multi-source bioinformaticsCited by: 2
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Chunguang Liang, Kevin Schmidt, Xiaoyan Ke, Annette Just, Angelika Pfanne, Andreas Pich, G. Warnecke, Peter Braubach, Christina Petzold, Danny Jonigk, Jörg H W Distler, Jan Fiedler, Thomas Thum, Meik Kunz
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-021-94256-8
Proteomics and metabonomics analyses of Covid-19 complications in patients with pulmonary fibrosisCited by: 10
Author(s): Jianrong Yang, Chunxia Chen, Wan Chen, Luying Huang, Zhao Fu, Kun Ye, Liwen Lv, Zhihuang Nong, Xing Zhou, Wensheng Lu, Ming Zhong
Software Mentions: 6
Published: over 3 years ago
10.1016/j.xcrm.2021.100267
Cabozantinib and dasatinib synergize to induce tumor regression in non-clear cell renal cell carcinomaCited by: 2
Author(s): Hui Wen Lue, Daniel S. Derrick, Soumya Rao, Ahna Van Gaest, Larry C. Cheng, Jennifer Podolak, Samantha Lawson, Changhui Xue, Devin Garg, Ralph E. White, Christopher W. Ryan, Justin M. Drake, Anna Ritz, Laura M. Heiser, George V. Thomas
Software Mentions: 6
Published: over 3 years ago
10.1074/jbc.RA120.014745
Quantitative phosphoproteomic analysis reveals involvement of PD-1 in multiple T cell functionsCited by: 14
Author(s): Anna S. Tocheva, Michael Peled, Marianne Strazza, Kieran Adam, Shalom Lerrer, Shruti Nayak, Inbar Azoulay-Alfaguter, Connor Foster, Elliot A. Philips, Benjamin G. Neel, Beatrix Ueberheide, Adam Mor
Software Mentions: 6
Published: almost 4 years ago
10.15252/embj.2021108345
Piwi–piRNA complexes induce stepwise changes in nuclear architecture at target lociCited by: 4
Author(s): Yuka W. Iwasaki, Sira Sriswasdi, Yasuha Kinugasa, Jun Adachi, Yasunori Horikoshi, Aoi Shibuya, Wataru Iwasaki, Satoshi Tashiro, Takeshi Tomonaga, Haruhiko Siomi
Software Mentions: 6
Published: over 3 years ago
10.1186/s12864-017-3683-9
Reduced changes in protein compared to mRNA levels across non-proliferating tissuesCited by: 72
Author(s): Kobi Perl, Kathy Ushakov, Yair Pozniak, Ofer Yizhar-Barnea, Yoni Bhonker, Shaked Shivatzki, Tamar Geiger, Karen B. Avraham, Ron Shamir
Software Mentions: 6
Published: over 7 years ago
10.1080/20013078.2020.1785746
Influence of species and processing parameters on recovery and content of brain tissue‐derived extracellular vesiclesCited by: 62
Author(s): Yiyao Huang, Lesley Cheng, Andrey Turchinovich, Vasiliki Mahairaki, Juan C. Troncoso, Olga Pletniková, Norman J. Haughey, Laura J. Vella, Andrew F. Hill, Lei Zheng, Kenneth W. Witwer
Software Mentions: 6
Published: over 4 years ago
10.1371/journal.pgen.1008037
Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeastCited by: 24
Author(s): Kevin S. Myers, Nicholas M. Riley, Matthew E. MacGilvray, Trey K. Sato, Mick McGee, Justin Heilberger, Joshua J. Coon, Audrey P. Gasch
Software Mentions: 6
Published: over 5 years ago
10.7554/eLife.37078
Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genesCited by: 31
Author(s): Corinna Speth, Emese Szabó, Cláudia Martinho, Silvio Collani, Sven zur Oven-Krockhaus, Sandra Richter, Irina Droste-Borel, Boris Maček, York‐Dieter Stierhof, Markus Schmid, Chang Liu, Sascha Laubinger
Software Mentions: 6
Published: about 6 years ago
10.1128/mBio.02683-20
The Zinc Finger Antiviral Protein ZAP Restricts Human Cytomegalovirus and Selectively Binds and Destabilizes Viral <i>UL4</i> / <i>UL5</i> TranscriptsCited by: 23
Author(s): Ana Cristina Gonzalez-Perez, Markus Stempel, Emanuel Wyler, Christian Urban, Antonio Piras, Thomas Hennig, Sabina Ganskih, Yuanjie Wei, Albert Heim, Markus Landthaler, Andreas Pichlmair, Lars Dölken, Mathias Munschauer, Florian Erhard, Melanie M. Brinkmann
Software Mentions: 6
Published: over 3 years ago
10.1074/mcp.O117.068122
Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine LearningCited by: 23
Author(s): Thomas W. M. Crozier, Michele Tinti, Mark Larance, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 6
Published: almost 7 years ago
10.1186/s13068-018-1116-x
Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032Cited by: 54
Author(s): Shihui Yang, Jessica M. Vera, Jeff Grass, Giannis Savvakis, Oleg V. Moskvin, Yongqiang Yang, Sean J. McIlwain, Yucai Lyu, Irene Zinonos, Alexander S. Hebert, Joshua J. Coon, Donna M. Bates, Trey K. Sato, Steven D. Brown, Michael E. Himmel, Min Zhang, Robert Landick, Katherine M. Pappas, Yaoping Zhang
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pone.0227258
Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2Cited by: 29
Author(s): Nhi Hin, Morgan Newman, Jan Kaslin, Alon M. Douek, Amanda L. Lumsden, Seyyed Hani Moussavi Nik, Yang Dong, Xin Zhou, Noralyn B. Mañucat-Tan, Alastair J. Ludington, David L. Adelson, Stephen Pederson, Michael Lardelli
Software Mentions: 6
Published: almost 5 years ago
10.1128/mSystems.01296-20
Harnessing Machine Learning To Unravel Protein Degradation in Escherichia coliCited by: 16
Author(s): Natan Nagar, Noa Ecker, Gil Loewenthal, Oren Avram, Daniella Ben-Meir, Dvora Biran, Eliora Z. Ron, Tal Pupko
Software Mentions: 6
Published: over 3 years ago
10.1084/jem.20192275
<i>NCKAP1L</i> defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammationCited by: 44
Author(s): Carla Castro, Michelle Rosenzwajg, Raphaël Carapito, Mohammad Shahrooei, Martina Konantz, Amjad Khan, Zhichao Miao, Miriam Groß, Thibaud Tranchant, Mirjana Radosavljevic, Nicodème Paul, Tristan Stemmelen, Fabien Pitoiset, Aurélie Hirschler, Benoît Nespola, Anne Molitor, Véronique Rolli, Angélique Pichot, Laura Faletti, Bruno Rinaldi, Sylvie Friant, Mark Mednikov, Hatice Karaüzüm, M. Javad Aman, Christine Carapito, Claudia Lengerke, Vahid Ziaee, Wafaa Eyaid, Stephan Ehl, Fayhan Alroqi, Nima Parvaneh, Seiamak Bahram
Software Mentions: 6
Published: over 4 years ago
10.1038/sdata.2018.185
The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer's diseaseCited by: 284
Author(s): Minghui Wang, Noam D. Beckmann, Panos Roussos, Erming Wang, Xianxiao Zhou, Qian Wang, Chi Ming, Ryan Neff, Wanli Ma, John F. Fullard, Mads E. Hauberg, Jaroslav Bendl, Mette A. Peters, Ben Logsdon, Pei Wang, Milind Mahajan, Lara M. Mangravite, Eric B. Dammer, Duc M. Duong, James J. Lah, Nicholas T. Seyfried, Aĺlan I. Levey, Joseph D. Buxbaum, Michelle E. Ehrlich, Sam Gandy, Pavel Katsel, Vahram Haroutunian, Eric E. Schadt, Bin Zhang
Software Mentions: 6
Published: about 6 years ago
10.1186/s12915-018-0547-y
Species comparison of liver proteomes reveals links to naked mole-rat longevity and human agingCited by: 52
Author(s): Ivonne Heinze, Martin Bens, Enrico Calzia, Susanne Holtze, Oleksandr Dakhovnik, Arne Sahm, Joanna Kirkpatrick, Karol Szafranski, Natalie Romanov, Sai Nagender Sama, Kerstin Hölzer, Stephan Singer, Maria A. Ermolaeva, Matthias Platzer, Thomas B. Hildebrandt, Alessandro Ori
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pbio.2006092
Refined RIP-seq protocol for epitranscriptome analysis with low input materialsCited by: 97
Author(s): Yong Zeng, Shiyan Wang, Shanshan Gao, Fraser Soares, Musadeqque Ahmed, Haiyang Guo, Miranda Wang, Junjie Hua, Jiansheng Guan, Michael F. Moran, Ming‐Sound Tsao, Housheng Hansen He
Software Mentions: 6
Published: about 6 years ago
10.7554/eLife.39054
New insights into the cellular temporal response to proteostatic stressCited by: 40
Author(s): Justin Rendleman, Zhe Cheng, Shuvadeep Maity, Nicolai Kastelic, Mathias Munschauer, Kristina Allgoewer, Guoshou Teo, Yun Bin Matteo Zhang, Amy Lei, Brian J. Parker, Markus Landthaler, Lindsay Freeberg, Scott Kuersten, Hyungwon Choi, Christine Vogel
Software Mentions: 5
Published: about 6 years ago
10.1186/s12864-017-3978-x
Succinyl-proteome profiling of Dendrobium officinale, an important traditional Chinese orchid herb, revealed involvement of succinylation in the glycolysis pathwayCited by: 37
Author(s): Shi Feng, Kaili Jiao, Hong Guo, Min Jiang, Juan Hao, Huizhong Wang, Chenjia Shen
Software Mentions: 5
Published: over 7 years ago
10.3390/proteomes8030015
Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy PlatformCited by: 9
Author(s): Subina Mehta, Caleb Easterly, Ray Sajulga, Robert Millikin, Andrea Argentini, Ignacio Eguinoa, Lennart Martens, Michael R. Shortreed, Lloyd M. Smith, Thomas McGowan, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik Jagtap
Software Mentions: 5
Published: over 4 years ago
10.1016/j.ajhg.2021.04.024
Bi-allelic loss-of-function variants in BCAS3 cause a syndromic neurodevelopmental disorderCited by: 6
Author(s): Holger Hengel, Shabab B. Hannan, Sarah Dyack, Sara MacKay, Ulrich Schatz, Martin Fleger, Andreas Kurringer, Ghassan Balousha, Zaïd Ghanim, Fowzan S. Alkuraya, Hamad Alzaidan, Hessa S. Alsaif, Tadahiro Mitani, Sevcan Tuğ Bozdoğan, Davut Pehlivan, James R. Lupski, Joseph J Gleeson, Mohammadreza Dehghani, Mohammad Yahya Vahidi Mehrjardi, Elliott H. Sherr, Kendall C. Parks, Emanuela Argilli, Amber Begtrup, Hamid Galehdari, Osama Balousha, Gholamreza Shariati, Neda Mazaheri, Reza Azizi Malamiri, Alistair T. Pagnamenta, Helen Kingston, Siddharth Banka, Adam Jackson, Mathew Osmond, Angelika Rieß, Tobias B. Haack, Thomas Nägele, Stefanie Schuster, Stefan Hauser, Jakob Admard, Nicolas Casadei, Ana Velić, Boris Maček, Stephan Ossowski, Henry Houlden, Reza Maroofian, Lüdger Schöls
Software Mentions: 5
Published: over 3 years ago
10.1186/s12864-019-6314-9
Mating precedes selective immune priming which is maintained throughout bumblebee queen diapauseCited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: almost 5 years ago
10.1186/s12920-019-0530-7
Novel secretome-to-transcriptome integrated or secreto-transcriptomic approach to reveal liquid biopsy biomarkers for predicting individualized prognosis of breast cancer patientsCited by: 11
Author(s): John A. Ankney, Ling Xie, John A. Wrobel, Li Wang, Xian Chen
Software Mentions: 5
Published: over 5 years ago
10.15252/msb.20177608
Landscape of nuclear transport receptor cargo specificityCited by: 79
Author(s): Marie‐Therese Mackmull, Bernd Klaus, Ivonne Heinze, Manopriya Chokkalingam, Andreas Beyer, Robert B. Russell, Alessandro Ori, Martin Beck
Software Mentions: 5
Published: almost 7 years ago
10.3389/fgene.2018.00026
Transcriptomic and Proteomic Profiling Revealed High Proportions of Odorant Binding and Antimicrobial Defense Proteins in Olfactory Tissues of the House MouseCited by: 26
Author(s): Barbora Kuntová, Romana Stopková, Pavel Stopka
Software Mentions: 5
Published: almost 7 years ago
10.1111/febs.15292
Fibroblast‐specific genome‐scale modelling predicts an imbalance in amino acid metabolism in Refsum diseaseCited by: 4
Author(s): Agnieszka B. Wegrzyn, Katharina Herzog, Albert Gerding, Marcel Kwiatkowski, Justina C. Wolters, Amalia M. Dolga, A. E. M. van Lint, Ronald J. A. Wanders, Hans R. Waterham, Barbara M. Bakker
Software Mentions: 5
Published: over 4 years ago
10.3389/fcell.2020.608044
Loss of G-Protein Pathway Suppressor 2 Promotes Tumor Growth Through Activation of AKT SignalingCited by: 10
Author(s): Stefanie Chan, Emma Smith, Yuan Gao, Julian Kwan, Benjamin Blum, Andrew Tilston-Lünel, Isabella Turcinovic, Xaralabos Varelas, Maria Dafne Cardamone, Stefano Monti, Andrew Emili, Valentina Perissi
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0182270
Differential regulation of germ line apoptosis and germ cell differentiation by CPEB family members in C. elegansCited by: 4
Author(s): Kapil Dev Singh, Xue Zheng, Stuart Milstein, Martin Keller, Bernd Roschitzki, Jonas Grossmann, Michael O. Hengartner
Software Mentions: 5
Published: over 7 years ago
10.15252/embj.2019103852
Grad‐seq in a Gram‐positive bacterium reveals exonucleolytic <scp>sRNA</scp> activation in competence controlCited by: 47
Author(s): Jens Hör, Geneviève Garriss, Silvia Di Giorgio, Lisa-Marie Hack, Jens T. Vanselow, Konrad U. Förstner, Andreas Schlösser, Birgitta Henriques‐Normark, Jörg Vogel
Software Mentions: 5
Published: over 4 years ago
10.1111/pbi.12852
The transcriptome, extracellular proteome and active secretome of agroinfiltrated<i>Nicotiana benthamiana</i>uncover a large, diverse protease repertoireCited by: 52
Author(s): Friederike Grosse‐Holz, Steven L. Kelly, Svenja Blaskowski, Farnusch Kaschani, Markus Kaiser, Renier A. L. van der Hoorn
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pone.0234752
Bayesian networks established functional differences between breast cancer subtypesCited by: 5
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Rocío López-Vacas, Elena López-Camacho, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Mariana Díaz-Almirón, María Ferrer-Gómez, Hilario Navarro, Paolo Nanni, Pilar Zamora, Enrique Espinosa, Paloma Maı́n, Juan Ángel Fresno Vara
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0152067
MaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuantCited by: 13
Author(s): Tao Zhou, Chuyu Li, Wene Zhao, Xinru Wang, Fuqiang Wang, Jiahao Sha
Software Mentions: 5
Published: over 8 years ago
10.1371/journal.pbio.3000170
The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulationCited by: 24
Author(s): Kasper Engholm-Keller, Ashley J. Waardenberg, Johannes Alexander Müller, Jesse R. Wark, Rowena N Fernando, Jonathan W. Arthur, Phillip J. Robinson, Dirk Dietrich, Susanne Schoch, Mark E. Graham
Software Mentions: 5
Published: over 5 years ago
10.1016/j.bbapap.2013.02.032
Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspectiveCited by: 67
Author(s): Yasset Perez‐Riverol, Rui Wang, Henning Hermjakob, Markus Müller, Vladimir Vesada, Juan Antonio Vizcaíno
Software Mentions: 5
Published: almost 11 years ago
10.1021/acsomega.1c03681
Interactome Networks of FOSL1 and FOSL2 in Human Th17 CellsCited by: 5
Author(s): Ankitha Shetty, Santosh D. Bhosale, Subhash Tripathi, Tanja Buchacher, Rahul Biradar, Omid Rasool, Robert Moulder, Sanjeev Galande, Riitta Lahesmaa
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pone.0170762
Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fieldsCited by: 13
Author(s): Arnold Kuzniar, Charlie Laffeber, Berina Eppink, Karel Bezstarosti, Dick H. W. Dekkers, H. Woelders, A.P.M. Zwamborn, Jeroen Demmers, Joyce H.G. Lebbink, Roland Kanaar
Software Mentions: 5
Published: over 7 years ago
10.1186/s13024-020-00405-4
Integrated analysis of the aging brain transcriptome and proteome in tauopathyCited by: 20
Author(s): Carl Grant Mangleburg, Timothy Wu, Hari Krishna Yalamanchili, Caiwei Guo, Yi-Cheng Hsieh, Duc Duong, Eric B. Dammer, Philip L. De Jager, Nicholas T. Seyfried, Zhandong Liu, Zhandong Liu
Software Mentions: 5
Published: about 4 years ago
10.1074/mcp.O115.050229
PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange DatasetsCited by: 129
Author(s): Yasset Perez‐Riverol, Qing Wei Xu, Rui Wang, Julian Uszkoreit, Johannes Griss, Aniel Sánchez, Florian Reisinger, Attila Csordás, Tobias Ternent, Noemi del-Toro, José A. Dianes, Martin Eisenacher, Henning Hermjakob, Juan Antonio Vizcaíno
Software Mentions: 5
Published: almost 9 years ago
10.3389/fphys.2021.652799
Proteomics and Machine Learning Approaches Reveal a Set of Prognostic Markers for COVID-19 Severity With Drug Repurposing PotentialCited by: 45
Author(s): Kruthi Suvarna, Deeptarup Biswas, Medha Gayathri J Pai, Arup Acharjee, Renuka Bankar, Viswanthram Palanivel, Akanksha Salkar, Ayushi Verma, Amrita Mukherjee, Manisha Choudhury, Saicharan Ghantasala, Susmita Ghosh, Avinash Singh, Arghya Banerjee, Apoorva Badaya, Surbhi Bihani, Gaurish Loya, Krishi Mantri, Ananya Burli, Jyotirmoy Roy, Alisha Srivastava, Sachee Agrawal, Om Shrivastav, Jayanthi Shastri, Sanjeeva Srivastava
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.64940
DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamicsCited by: 32
Author(s): Vivian Tam, Peikai Chen, Anita Yee, Nestor Solis, Théo Klein, Mateusz Kudelko, Rakesh Sharma, Wing‐Lok Chan, Christopher M. Overall, Lisbet Haglund, Pak C. Sham, Kathryn S.E. Cheah, Danny Chan
Software Mentions: 5
Published: almost 4 years ago
10.7554/eLife.41556
Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phaseCited by: 40
Author(s): Sven Schenk, Stephanie Bannister, Fritz J. Sedlazeck, Dorothea Anrather, Bùi Quang Minh, Andrea Bileck, Markus Hartl, Arndt von Haeseler, Christopher Gerner, Florian Raible, Kristin Tessmar-Raible
Software Mentions: 5
Published: almost 6 years ago
10.1016/j.chom.2018.03.007
Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage DevelopmentCited by: 122
Author(s): Christa Geeke Toenhake, Sabine Anne‐Kristin Fraschka, M. Vijayabaskar, David R. Westhead, Simon J. van Heeringen, Richárd Bártfai
Software Mentions: 5
Published: over 6 years ago
10.3389/fnmol.2019.00272
DYRK1A Overexpression Alters Cognition and Neural-Related Proteomic Pathways in the Hippocampus That Are Rescued by Green Tea Extract and/or Environmental EnrichmentCited by: 18
Author(s): Ilario De Toma, Mireia Ortega, Patrick Aloy, Eduard Sabidó, Mara Dierssen
Software Mentions: 5
Published: about 5 years ago
10.1038/s42003-020-01181-z
Transcriptomic and proteomic signatures of stemness and differentiation in the colon cryptCited by: 27
Author(s): Amber N. Habowski, Jessica L. Flesher, Jennifer Bates, Chia‐Feng Tsai, Kendall J. Martin, Rui Zhao, Anand K. Ganesan, Robert A. Edwards, Tujin Shi, H. Steven Wiley, Yongsheng Shi, Klemens J. Hertel, Marian L. Waterman
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-021-81740-4
Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverageCited by: 3
Author(s): Ching-Tai Chen, Jen-Hung Wang, Cheng-Wei Cheng, Wei-Che Hsu, Chu-Ling Ko, Wai-Kok Choong, Ting‐Yi Sung
Software Mentions: 5
Published: almost 4 years ago
10.3390/cancers13112592
Identification of Candidate Protein Biomarkers for CIN2+ Lesions from Self-Sampled, Dried Cervico–Vaginal Fluid Using LC-MS/MSCited by: 6
Author(s): Ariadna Lara Gutiérrez, Julia Hedlund Lindberg, Ganna Shevchenko, Inger Gustavsson, Jonas Bergquist, Ulf Gyllensten, Stefan Enroth
Software Mentions: 5
Published: over 3 years ago
10.3390/cancers12061531
Mass Spectrometric Comparison of HPV-Positive and HPV-Negative Oropharyngeal CancerCited by: 6
Author(s): M. Wurlitzer, Nikolaus Möckelmann, Malte Kriegs, Maren Vens, Maryam Omidi, Konstantin Hoffer, Clara von Bargen, Christina Möller‐Koop, Melanie Witt, Conrad Droste, Agnes Oetting, Hannes Petersen, Chia‐Jung Busch, Adrian Münscher, Hartmut Schlüter, Till S. Clauditz, Thorsten Rieckmann
Software Mentions: 5
Published: over 4 years ago
10.1186/s13059-020-02247-1
Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequencesCited by: 22
Author(s): Caroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky
Software Mentions: 5
Published: almost 4 years ago
10.1186/s13059-019-1857-2
eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5′UTRCited by: 34
Author(s): Ania Wilczynska, Sarah L. Gillen, Tobias Schmidt, Hedda A. Meijer, Rebekah Jukes-Jones, Claudia Langlais, Kari Kopra, Wei-Ting Lu, Jack D. Godfrey, Ben R Hawley, Kelly Hodge, Sara Zanivan, Kelvin Cain, John Le Quesne, Martin Bushell
Software Mentions: 5
Published: almost 5 years ago
10.3390/cancers13051097
Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal CancerCited by: 10
Author(s): Martina K. Zowada, Stephan M. Tirier, Sebastian M. Dieter, Teresa G Krieger, Ava Oberlack, Robert Lorenz Chua, Mario Huerta, Foo Wei Ten, Karin Laaber, Jeongbin Park, Katharina Jechow, Torsten Müller, Mathias Kalxdorf, Mark Kriegsmann, Katharina Kriegsmann, Friederike Herbst, Jeroen Krijgsveld, Martin Schneider, Roland Eils, Hanno Glimm, Christian Conrad, Claudia R. Ball
Software Mentions: 5
Published: over 3 years ago
10.3390/ijms22042046
Dysregulated Provision of Oxidisable Substrates to the Mitochondria in ME/CFS LymphoblastsCited by: 20
Author(s): Daniel Missailidis, Oana Sanislav, Claire Y. Allan, Paige K. Smith, Sarah J. Annesley, Paul R. Fisher
Software Mentions: 5
Published: almost 4 years ago
10.7554/eLife.66014
Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responsesCited by: 18
Author(s): Stephan Wilmes, Polly-Anne Jeffrey, Jonathan Martínez-Fábregas, Maximillian Hafer, Paul K. Fyfe, Elizabeth Pöhler, Silvia Gaggero, Martín López‐García, Grant Lythe, Charles Taylor, Thomas Guerrier, David Launay, Suman Mitra, Jacob Piehler, Carmen Molina-Parı́s, Ignacio Moraga
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-87759-x
SIRT1 promotes lipid metabolism and mitochondrial biogenesis in adipocytes and coordinates adipogenesis by targeting key enzymatic pathwaysCited by: 58
Author(s): Yasser Majeed, Najeeb Halabi, Aisha Madani, Rudolf Engelke, Aditya Bhagwat, Houari Abdesselem, Maha Victor Agha, Muneera Vakayil, Raphael Jean Courjaret, Neha Goswami, Hisham Ben Hamidane, Mohamed A. Elrayess, Arash Rafii, Johannes Graumann, Frank Schmidt, Nayef Mazloum
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-72625-z
Re-establishment of the epigenetic state and rescue of kinome deregulation in Ts65Dn mice upon treatment with green tea extract and environmental enrichmentCited by: 13
Author(s): Ilario De Toma, Mireia Ortega, Silvina Catuara-Solarz, Cesar Sierra, Eduard Sabidó, Mara Dierssen
Software Mentions: 4
Published: about 4 years ago
10.1016/j.celrep.2021.109583
Dynamic bi-directional phosphorylation events associated with the reciprocal regulation of synapses during homeostatic up- and down-scalingCited by: 19
Author(s): Kristina Desch, Julian D. Langer, Erin M. Schuman
Software Mentions: 4
Published: over 3 years ago
10.3389/fpls.2015.00967
The effector repertoire of Fusarium oxysporum determines the tomato xylem proteome composition following infectionCited by: 55
Author(s): Fleur Gawehns, Lisong Ma, Oskar Bruning, Petra M. Houterman, Sjef Boeren, Ben J. C. Cornelissen, Martijn Rep, Frank L. W. Takken
Software Mentions: 4
Published: about 9 years ago
10.1038/s41419-021-04057-0
TRAIP modulates the IGFBP3/AKT pathway to enhance the invasion and proliferation of osteosarcoma by promoting KANK1 degradationCited by: 14
Author(s): Mi Li, Wei Wu, Sisi Deng, Zengwu Shao, Xin Jin
Software Mentions: 4
Published: over 3 years ago
10.3390/ijms22158251
DIA-Based Quantitative Proteomics Reveals the Protein Regulatory Networks of Floral Thermogenesis in Nelumbo nuciferaCited by: 5
Author(s): Yueyang Sun, Yu Zeng, Jing Jin, Hao Chen, Zhiying Liu, Qinru Zi, Zeyang Xiong, Ying Wang, Qian Li, Jing Peng, Yi Ding
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-64623-y
Comparative analysis of MACROD1, MACROD2 and TARG1 expression, localisation and interactomeCited by: 20
Author(s): Roko Žaja, Gülcan Aydin, Barbara E. Lippok, Regina Feederle, Bernhard Lüscher, Karla L. H. Feijs
Software Mentions: 4
Published: over 4 years ago
10.1083/jcb.202004010
mTORC1 activity is supported by spatial association with focal adhesionsCited by: 35
Author(s): Yoana Rabanal‐Ruiz, Adam Byron, Alexander Wirth, Ralitsa R. Madsen, Lucia Sedlackova, Graeme Hewitt, Glyn Nelson, Julian Stingele, Jimi Wills, Tong Zhang, André Zeug, Reinhard Fässler, Bart Vanhaesebroeck, Oliver D.K. Maddocks, Evgeni Ponimaskin, Bernadette Carroll, Viktor I. Korolchuk
Software Mentions: 4
Published: over 3 years ago
10.1016/j.jbc.2021.100335
Disturbed intramitochondrial phosphatidic acid transport impairs cellular stress signalingCited by: 9
Author(s): Akinori Eiyama, Mari J. Aaltonen, Hendrik Nolte, Takashi Tatsuta, Thomas Langer
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-019-44542-3
Plasmodium pseudo-Tyrosine Kinase-like binds PP1 and SERA5 and is exported to host erythrocytesCited by: 9
Author(s): Bénédicte Gnangnon, Aline Fréville, Kátia Cailliau, Catherine Leroy, Caroline De Witte, David Tulasne, Alain Martoriarti, Vincent Jung, Ida Chiara Guerrera, Sabrina Marion, Jamal Khalife, Christine Pierrot
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2019.01410
On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria ProteogenomicsCited by: 6
Author(s): K.C.T. Machado, Suereta Fortuin, Gisele G. Tomazella, André Fonseca, Robin M. Warren, Harald G. Wiker, Sandro J. de Souza, Gustavo Souza
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2016.00427
Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass SpectrometryCited by: 16
Author(s): Potgieter Mg, Kehilwe C. Nakedi, Jon Ambler, Andrew J. M. Nel, Shaun Garnett, Nelson C. Soares, Nicola Mulder, Jonathan M. Blackburn
Software Mentions: 4
Published: over 8 years ago
10.1186/s13059-015-0742-x
Extensive identification and analysis of conserved small ORFs in animalsCited by: 162
Author(s): Sebastian D. Mackowiak, Henrik Zauber, Chris Bielow, Denise Thiel, Kamila Kutz, Lorenzo Calviello, Guido Mastrobuoni, Nikolaus Rajewsky, Stefan Kempa, Matthias Selbach, Benedikt Obermayer
Software Mentions: 4
Published: about 9 years ago
10.1007/s00251-014-0819-9
Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoiresCited by: 79
Author(s): Elin Bergseng, Siri Dørum, Magnus Ø. Arntzen, Morten Nielsen, Ståle Nygård, Søren Buus, Gustavo Souza, Ludvig M. Sollid
Software Mentions: 4
Published: almost 10 years ago
10.1038/s41598-019-49817-3
An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryoCited by: 35
Author(s): Steffen Israel, Markus Ernst, Olympia E. Psathaki, Hannes C.A. Drexler, Ellen Casser, Yutaka Suzuki, Wojciech Makałowski, Michele Boiani, Georg Fuellen, Leila Taher
Software Mentions: 4
Published: about 5 years ago
10.1016/j.isci.2021.102807
Identification of response signatures for tankyrase inhibitor treatment in tumor cell linesCited by: 6
Author(s): Line Mygland, Jo Waaler, Martin Frank Strand, Petter Olsen, Aleksandra Aizenshtadt, Kaja Lund, Nina Solberg, Max Lycke, Tor Espen Thorvaldsen, Sandra Espada, Dorna Misaghian, Christian M. Page, Oleg Agafonov, Ståle Nygård, Nai‐Wen Chi, Eva Lin, Jenille Tan, Yihong Yu, Mike Costa, Stefan Krauß, Jo Waaler
Software Mentions: 4
Published: over 3 years ago