Scientific Papers with Software Mentions

10.1186/s40249-020-00677-4

Factors associated with mobile phone ownership and potential use for rabies vaccination campaigns in southern Malawi
Cited by: 15
Author(s): Orla Marron, Gareth J. Thomas, Jordana L. Burdon Bailey, Dagmar Mayer, Paul Orion Grossman, Frederic Lohr, Andrew D Gibson, Luke Gamble, Patrick Chikungwa, Julius L.C. Chulu, Ian Handel, Barend Mark de Clare Bronsvoort, Richard J. Mellanby, Stella Mazeri
Software Mentions: 9
Published: about 6 years ago

10.1001/jamanetworkopen.2019.9812

Association of Severe Hyperoxemia Events and Mortality Among Patients Admitted to a Pediatric Intensive Care Unit
Cited by: 21
Author(s): Sriram Ramgopal, Cameron Dezfulian, Robert W. Hickey, Alicia K. Au, Shekhar T. Venkataraman, Robert S. B. Clark, Christopher M. Horvat
Software Mentions: 9
Published: almost 7 years ago

10.1007/s13755-020-00105-9

Predicting risk of stillbirth and preterm pregnancies with machine learning
Cited by: 43
Author(s): Aki Koivu, Mikko Sairanen
Software Mentions: 9
Published: over 6 years ago

10.1093/aobpla/plab016

Divergence of stem biomechanics and hydraulics between Bauhinia lianas and trees
Cited by: 6
Author(s): Xiangwu Yan, Yu Song, Fu-Chuan Wu, Shubin Zhang, Jiao‐Lin Zhang
Software Mentions: 9
Published: about 5 years ago

10.1038/s42003-021-01945-1

Chd8 regulates X chromosome inactivation in mouse through fine-tuning control of Xist expression
Cited by: 5
Author(s): Andrea Cerase, Alexander N. Young, Nerea Ruiz, Andreas Buneß, Gabrielle M Sant, Mirjam Arnold, Monica Di Giacomo, Michela Ascolani, Manish Kumar, Andreas Hierholzer, Giuseppe Trigiante, Sarah Marzi, Philip Avner
Software Mentions: 9
Published: about 5 years ago

10.3389/fmicb.2020.575707

Evaluating the Potential Antibiotic Resistance Status in Environment Based on the Trait of Microbial Community
Cited by: 9
Author(s): Zhiguo Su, Bei Huang, Quanquan Mu, Donghui Wen
Software Mentions: 9
Published: over 5 years ago

10.3389/fmicb.2018.02571

PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method
Cited by: 97
Author(s): Yi Xiong, Qiankun Wang, Junchen Yang, Xiaolei Zhu, Dong‐Qing Wei
Software Mentions: 9
Published: over 7 years ago

10.1371/journal.pone.0188564

Widespread local chronic stressors in Caribbean coastal habitats
Cited by: 10
Author(s): Iliana Chollett, Rachel Collin, Carolina Bastidas, Aldo Cróquer, Peter M. H. Gayle, Eric Jordán-Dahlgren, Karen Koltes, Hazel A. Oxenford, Alberto Rodríguez-Ramírez, Ernesto Weil, Jahson Berhane Alemu, David Bone, Kenneth C. Buchan, Marcia Creary Ford, Edgar Escalante‐Mancera, Jaime Garzón-Ferreira, Héctor M. Guzmán, Björn Kjerfve, Eduardo Klein, Croy McCoy, Arthur C. Potts, Francisco Ruiz-Rentería, Struan R. Smith, John Tschirky, Jorge Cortés
Software Mentions: 9
Published: over 8 years ago

10.3390/ani9110989

The Effect of Animal Welfare Training on the Knowledge and Attitudes of Abattoir Stakeholders in China
Cited by: 13
Author(s): Kris Descovich, Xiaofei Li, Michelle Sinclair, Yan Wang, Clive J. C. Phillips
Software Mentions: 9
Published: over 6 years ago

10.1186/s13742-015-0065-6

An image database of Drosophila melanogaster wings for phenomic and biometric analysis
Cited by: 26
Author(s): Anne Sonnenschein, David VanderZee, William Pitchers, Sudarshan Chari, Ian Dworkin
Software Mentions: 9
Published: about 11 years ago

10.1155/2021/5510780

A Five-Gene Prognostic Nomogram Predicting Disease-Free Survival of Differentiated Thyroid Cancer
Cited by: 5
Author(s): Pan Ruchong, Hai-ping Tang, Xiang Wang
Software Mentions: 9
Published: about 5 years ago

10.3389/fmicb.2021.641643

Temporal Bacterial Community Diversity in the Nicotiana tabacum Rhizosphere Over Years of Continuous Monocropping
Cited by: 10
Author(s): Yan Ling, Wenyou Zhang, Wangjun Duan, Yizheng Zhang, Wen Zheng, Xianjun Lai
Software Mentions: 9
Published: about 5 years ago

10.3389/fdata.2020.00015

Improving Diagnosis of Depression With XGBOOST Machine Learning Model and a Large Biomarkers Dutch Dataset (n = 11,081)
Cited by: 42
Author(s): Amita Sharma, W. Verbeke
Software Mentions: 9
Published: about 6 years ago

10.1371/journal.pone.0225936

Improving distribution models of riparian vegetation with mobile laser scanning and hydraulic modelling
Cited by: 2
Author(s): Tua Nylén, Elina Kasvi, Jouni Salmela, Harri Kaartinen, Antero Kukko, Anttoni Jaakkola, Juha Hyyppä, Petteri Alho
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-019-50480-x

Early Prediction of Soybean Traits through Color and Texture Features of Canopy RGB Imagery
Cited by: 21
Author(s): Wenan Yuan, Nuwan K. Wijewardane, Shawn Jenkins, Geng Bai, Yufeng Ge, George L. Graef
Software Mentions: 9
Published: over 6 years ago

10.3389/fimmu.2019.00413

Transcriptional Profiles of California Sea Lion Peripheral NK and CD+8 T Cells Reflect Ecological Regionalization and Infection by Oncogenic Viruses
Cited by: 4
Author(s): Ignacio Peñín, Mónica Eugenia Figueroa-Cabañas, Fabiola Guerrero-de la Rosa, Luis A. Soto-García, Roberto Álvarez-Martínez, Adriana Flores-Morán, Karina Acevedo‐Whitehouse
Software Mentions: 9
Published: over 7 years ago

10.3390/mps4020028

The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow
Cited by: 2
Author(s): Daniele Mercatelli, Nicola Balboni, Francesca De Giorgio, Emanuela Aleo, Caterina Garone, Federico M. Giorgi
Software Mentions: 9
Published: about 5 years ago

10.3897/mycokeys.81.66249

Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa
Cited by: 6
Author(s): Peter Meidl, Brendan Furneaux, Kassim I. Tchan, Kerri L. Kluting, Martin Ryberg, Marie-Laure Guissou, Bakary Soro, Aïssata Traoré, Gbamon Konomou, Nourou S. Yorou, Anna Rosling
Software Mentions: 9
Published: about 5 years ago

10.1186/s13041-020-00681-7

Brain transcriptome analysis reveals subtle effects on mitochondrial function and iron homeostasis of mutations in the SORL1 gene implicated in early onset familial Alzheimer’s disease
Cited by: 22
Author(s): Karissa Barthelson, Stephen Pederson, Morgan Newman, Michael Lardelli
Software Mentions: 9
Published: over 5 years ago

10.7554/eLife.39380

Intergenerational epigenetic inheritance of cancer susceptibility in mammals
Cited by: 38
Author(s): Bluma J. Lesch, Zuzana Tóthová, Elizabeth A. Morgan, Zhicong Liao, Roderick T. Bronson, Benjamin L. Ebert, David C. Page
Software Mentions: 9
Published: about 7 years ago

10.26508/lsa.202101108

Microglia show differential transcriptomic response to Aβ peptide aggregates ex vivo and in vivo
Cited by: 11
Author(s): Karen N. McFarland, Carolina Wiesner Ceballos, Awilda M. Rosario, Thomas B. Ladd, Brenda D. Moore, Griffin Golde, Xue Wang, Mariet Allen, Nilufer Ertekin‐Taner, Cory C. Funk, Max Robinson, Priyanka Baloni, Noa Rappaport, Paramita Chakrabarty, Todd E. Golde
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pone.0179337

The acoustic repertoire and behavioural context of the vocalisations of a nocturnal dasyurid, the eastern quoll (Dasyurus viverrinus)
Cited by: 5
Author(s): Annalie Dorph, Paul G. McDonald
Software Mentions: 9
Published: almost 9 years ago

10.1128/mSystems.00493-20

Exometabolite Dynamics over Stationary Phase Reveal Strain-Specific Responses
Cited by: 3
Author(s): John L. Chodkowski, Ashley Shade
Software Mentions: 9
Published: over 5 years ago

10.1186/s12866-021-02211-4

Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana
Cited by: 10
Author(s): Justin Maire, Linda L. Blackall, Madeleine J. H. van Oppen
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pone.0249102

The rodent object-in-context task: A systematic review and meta-analysis of important variables
Cited by: 5
Author(s): Milou S. C. Sep, Marijn Vellinga, R. Angela Sarabdjitsingh, Marian Joëls
Software Mentions: 9
Published: almost 5 years ago

10.1371/journal.pone.0036664

Functional Morphometric Analysis of the Furcula in Mesozoic Birds
Cited by: 33
Author(s): Roger A. Close, Emily J. Rayfield
Software Mentions: 9
Published: about 14 years ago

10.1038/s41598-020-71521-w

Direct formalin fixation induces widespread transcriptomic effects in archival tissue samples
Cited by: 9
Author(s): Leah C. Wehmas, Susan Hester, Charles E. Wood
Software Mentions: 9
Published: almost 6 years ago

10.1186/s12862-019-1406-3

Specificity of resistance and geographic patterns of virulence in a vertebrate host-parasite system
Cited by: 9
Author(s): Agnes Piecyk, Olivia Roth, Martin Kalbe
Software Mentions: 9
Published: over 7 years ago

10.1038/s41598-020-66998-4

Comparison of differential accessibility analysis strategies for ATAC-seq data
Cited by: 26
Author(s): Paul Gontarz, Shuhua Fu, Xiaoyun Xing, Shaopeng Liu, Benpeng Miao, Viktoriia Bazylianska, Akhil Sharma, Pamela A. F. Madden, K. Lynn Cates, Andrew S. Yoo, Anna Moszczyńska, Ting Wang, Bo Zhang
Software Mentions: 9
Published: about 6 years ago

10.1186/1471-2288-14-91

Comparing classification methods for diffuse reflectance spectra to improve tissue specific laser surgery
Cited by: 8
Author(s): Alexander Engelhardt, Rajesh Kanawade, Christian Knipfer, Matthias Schmid, Florian Stelzle, Werner Adler
Software Mentions: 9
Published: almost 12 years ago

10.1186/s13040-021-00267-6

eQTpLot: a user-friendly R package for the visualization of colocalization between eQTL and GWAS signals
Cited by: 11
Author(s): Theodore G. Drivas, Anastasia Lucas, Marylyn D. Ritchie
Software Mentions: 9
Published: almost 5 years ago

10.1371/journal.pone.0172278

Combined bio-logging and stable isotopes reveal individual specialisations in a benthic coastal seabird, the Kerguelen shag
Cited by: 16
Author(s): Elodie C. M. Camprasse, Yves Cherel, John P. Y. Arnould, Andrew J. Hoskins, Charles‐André Bost
Software Mentions: 9
Published: over 9 years ago

10.3390/microorganisms9051009

Honeybees Exposure to Natural Feed Additives: How Is the Gut Microbiota Affected?
Cited by: 9
Author(s): Daniele Alberoni, Loredana Baffoni, Chiara Braglia, Francesca Gaggìa, Diana Di Gioia
Software Mentions: 9
Published: about 5 years ago

10.1186/s12859-021-04020-y

MeltingPlot, a user-friendly online tool for epidemiological investigation using High Resolution Melting data
Cited by: 4
Author(s): Matteo Perini, Gherard Batisti Biffignandi, Domenico Di Carlo, Ajay Ratan Pasala, Aurora Piazza, Simona Panelli, Gian Vincenzo Zuccotti, Francesco Comandatore
Software Mentions: 9
Published: over 5 years ago

10.18632/aging.102424

The construction and analysis of tumor-infiltrating immune cell and ceRNA networks in recurrent soft tissue sarcoma
Cited by: 29
Author(s): Runzhi Huang, Tong Meng, Rui Chen, Penghui Yan, Jie Zhang, Peng Hu, Xiaolong Zhu, Huabin Yin, Dianwen Song, Zongqiang Huang
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-021-92648-4

Transmitting silks of maize have a complex and dynamic microbiome
Cited by: 5
Author(s): Eman M. Khalaf, Anuja Shrestha, Jeffrey Rinne, Michael D. J. Lynch, Charles Shearer, Victor Limay-Rios, L. M. Reid, Manish N. Raizada
Software Mentions: 9
Published: about 5 years ago

10.1098/rsos.200100

Diet composition and social environment determine food consumption, phenotype and fecundity in an omnivorous insect
Cited by: 20
Author(s): Yeisson Gutiérrez, Marion Fresch, David Ott, Jens Brockmeyer, Christoph Scherber
Software Mentions: 9
Published: about 6 years ago

10.1186/s12889-020-08923-y

Temporal and textual analysis of social media on collective discourses during the Zika virus pandemic
Cited by: 8
Author(s): May O. Lwin, Jiahui Lu, Anita Sheldenkar, Ysa Marie Cayabyab, Andrew Yee, Helen Smith
Software Mentions: 9
Published: about 6 years ago

10.1038/s41598-021-81051-8

Summer weather conditions influence winter survival of honey bees (Apis mellifera) in the northeastern United States
Cited by: 37
Author(s): Martina Calovi, Christina M. Grozinger, Douglas A. Miller, Sarah C. Goslee
Software Mentions: 9
Published: over 5 years ago

10.1186/s12859-016-1442-6

Unboxing cluster heatmaps
Cited by: 25
Author(s): Sophie Engle, Sean Whalen, Alark Joshi, Katherine S. Pollard
Software Mentions: 9
Published: over 9 years ago

10.7150/jca.47559

Preoperative Splenic Density for the Prediction of Survival and Adjuvant Chemotherapy Benefits in Gastric Cancer
Cited by: 1
Author(s): Weiteng Zhang, Ce Zhu, Xiang Wang, Sujun Wang, Xiao Chen, Xiaolei Chen, Xian Shen
Software Mentions: 9
Published: over 6 years ago

10.1177/2515841419835460

RNA-sequencing in ophthalmology research: considerations for experimental design and analysis
Cited by: 6
Author(s): Nicholas Owen, Mariya Moosajee
Software Mentions: 9
Published: over 7 years ago

10.1186/s13059-020-1935-5

Opportunities and challenges in long-read sequencing data analysis
Cited by: 1,295
Author(s): Shanika L. Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E. Ritchie, Quentin Gouil
Software Mentions: 9
Published: over 6 years ago

10.1186/s12864-016-2886-9

OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis
Cited by: 32
Author(s): Alfredo Rago, Donald G. Gilbert, Jeong Hyeon Choi, Timothy B. Sackton, Xiaozhu Wang, Yogeshwar D. Kelkar, John H. Werren, John K. Colbourne
Software Mentions: 9
Published: almost 10 years ago

10.1186/s12967-018-1608-2

NPM1 alternative transcripts are upregulated in acute myeloid and lymphoblastic leukemia and their expression level affects patient outcome
Cited by: 13
Author(s): Luiza Handschuh, Paweł Wojciechowski, Maciej Kaźmierczak, Małgorzata Marcinkowska-Swojak, Magdalena Łuczak, Krzysztof Lewandowski, Mieczysław Komarnicki, Jacek Błażewicz, Marek Figlerowicz, Piotr Kozlowski
Software Mentions: 9
Published: almost 8 years ago

10.1093/g3journal/jkab238

Whole-genome variation of transposable element insertions in a maize diversity panel
Cited by: 13
Author(s): Yinjie Qiu, Christine H. O’Connor, Rafael Della Coletta, Jonathan S. Renk, Patrick J. Monnahan, Jaclyn M. Noshay, Zhikai Liang, Amanda M. Gilbert, Sarah N. Anderson, Suzanne E. McGaugh, Nathan M. Springer, Candice N. Hirsch
Software Mentions: 9
Published: almost 5 years ago

10.1111/1744-7917.12606

The price of protection: a defensive endosymbiont impairs nymph growth in the bird cherry‐oat aphid, Rhopalosiphum padi
Cited by: 30
Author(s): Daniel J. Leybourne, Jorunn I. B. Bos, Tracy A. Valentine, Alison J. Karley
Software Mentions: 9
Published: almost 8 years ago

10.3389/fvets.2021.627894

Factors Affecting the Development of Bovine Respiratory Disease: A Cross-Sectional Study in Beef Steers Shipped From France to Italy
Cited by: 14
Author(s): Barbara Padalino, Francesco Cirone, Martina Zappaterra, Daniele Tullio, Gigliola Ficco, Antonio Giustino, Linda Amarachi Ndiana, Annamaria Pratelli
Software Mentions: 9
Published: almost 5 years ago

10.3389/fpubh.2021.679406

The Mediating Role of Placental Weight Change in the Association Between Prenatal Exposure to Thallium and Birth Weight: A Prospective Birth Cohort Study
Cited by: 4
Author(s): He Zhou, Xiangrong Sun, Yiding Wang, Yufeng Ye, Hanwei Chen, Qingsong Chen, Guanhao He, Jiaqi Wang, Xin Liu, Moran Dong, Dengzhou Chen, Guimin Chen, Lifang Yuan, Jianpeng Xiao, Jianxiong Hu, Weilin Zeng, Zuhua Rong, Qianqian Zhang, Mengya Zhou, Lingchuan Guo, Yanyun Lv, Jingjie Fan, Yudong Pu, Wenjun Ma, Bo Zhang, Tao Liu
Software Mentions: 9
Published: almost 5 years ago

10.1080/0886022X.2021.1937220

Dynamics in perioperative neutrophil-to-lymphocyte*platelet ratio as a predictor of early acute kidney injury following cardiovascular surgery
Cited by: 11
Author(s): Yang Li, Zhouping Zou, Yunlu Zhang, Bowen Zhu, Yuping Ning, Bo Shen, Chunsheng Wang, Zhe Luo, Jiacheng Xu, Xiaoqiang Ding
Software Mentions: 9
Published: over 5 years ago

10.18632/aging.203455

Construction of an immune-related lncRNA signature as a novel prognosis biomarker for LUAD
Cited by: 9
Author(s): Hang Chen, Wei Shen, Saiqi Ni, Menglu Sang, Shibo Wu, Yinyu Mu, Kaitai Liu, Ni Li, Linwen Zhu, Guodong Xu
Software Mentions: 9
Published: almost 5 years ago

10.5811/westjem.2016.5.29957

Emergency Department Length of Stay for Maori and European Patients in New Zealand
Cited by: 6
Author(s): D Prisk, Godfrey Aj, Amy E. Lawrence
Software Mentions: 9
Published: almost 10 years ago

10.1186/s13071-019-3812-1

Modelling temporal dynamics of Culicoides Latreille (Diptera: Ceratopogonidae) populations on Reunion Island (Indian Ocean), vectors of viruses of veterinary importance
Cited by: 8
Author(s): Yannick Grimaud, Hélène Guis, Frédéric Chiroleu, Floriane Boucher, Annelise Tran, Ignace Rakotoarivony, Maxime Duhayon, Catherine Cêtre-Sossah, Olivier Esnault, Éric Cardinale, Claire Garros
Software Mentions: 9
Published: over 6 years ago

10.3390/antiox10091424

S-Methyl-L-Ergothioneine to L-Ergothioneine Ratio in Urine Is a Marker of Cystine Lithiasis in a Cystinuria Mouse Model
Cited by: 2
Author(s): Miguel López de Heredia, Lourdes Muñoz, Ciriaco Carru, Salvatore Sotgia, Angelo Zinellu, C. Serra, Amadeu Llebaría, Yukio Kato, Virginia Nunes
Software Mentions: 9
Published: almost 5 years ago

10.1126/sciadv.abc8492

Persistent epigenetic reprogramming of sweet taste by diet
Cited by: 29
Author(s): Anoumid Vaziri, Morteza Khabiri, Brendan T. Genaw, Christina E. May, Peter L. Freddolino, Monica Dus
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-020-59292-w

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
Cited by: 5
Author(s): Johanne Ahrenfeldt, Madina Waisi, Isabella Charlotte Loft, Philip Thomas Lanken Conradsen Clausen, Rosa Lundbye Allesøe, Judit Szarvas, René S. Hendriksen, Frank Møller Aarestrup, Ole Lund
Software Mentions: 9
Published: over 6 years ago

10.1038/s41437-018-0059-0

Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral
Cited by: 46
Author(s): Kate M. Quigley, Patricia A. Warner, Line K. Bay, Bette L. Willis
Software Mentions: 9
Published: over 8 years ago

10.1186/s12859-016-1149-8

Boosting the discriminatory power of sparse survival models via optimization of the concordance index and stability selection
Cited by: 27
Author(s): Andreas Mayr, Benjamin Hofner, Matthias Schmid
Software Mentions: 9
Published: almost 10 years ago

10.16910/jemr.10.6.1

Abstracts of the 19th European Conference on Eye Movements 2017
Cited by: 3
Author(s): Ralph Radach, Heiner Deubel, Christian Vorstius, Markus Hofmann
Software Mentions: 9
Published: over 8 years ago

10.3390/ijerph18010318

Mapping the Scientific Landscape of Diabetes Research in Malaysia (2000–2018): A Systematic Scientometrics Study
Cited by: 5
Author(s): Kurubaran Ganasegeran, Chee Peng Hor, Mohd Fadzly Amar Jamil, Purnima Devi Suppiah, Juliana Mohd Noor, Norshahida Abdul Hamid, Deik Roy Chuan, Mohd Rizal Abdul Manaf, Alan Swee Hock Ch’ng, Irene Looi
Software Mentions: 9
Published: over 5 years ago

10.1038/sdata.2018.177

High resolution temperature data for ecological research and management on the Southern Ocean Islands
Cited by: 25
Author(s): Rachel I. Leihy, Grant A. Duffy, Erika Nortje, Steven L. Chown
Software Mentions: 9
Published: almost 8 years ago

10.1371/journal.pone.0209656

A distinct epigenetic profile distinguishes stenotic from non-inflamed fibroblasts in the ileal mucosa of Crohn’s disease patients
Cited by: 14
Author(s): Andrew Y. Li Yim, Jessica R. de Bruyn, Nicolette W. Duijvis, Catriona Sharp, Enrico Ferrero, Wouter J. de Jonge, Manon E. Wildenberg, Marcel M.A.M. Mannens, Christianne J. Buskens, Geert R. D’Haens, Peter Henneman, Anje A. te Velde
Software Mentions: 9
Published: over 7 years ago

10.1186/s12942-021-00268-y

Locational privacy-preserving distance computations with intersecting sets of randomly labeled grid points
Cited by: 2
Author(s): Rainer Schnell, Jonas Klingwort, James Farrow
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-019-56829-6

Integrative Analysis of Axolotl Gene Expression Data from Regenerative and Wound Healing Limb Tissues
Cited by: 18
Author(s): Mustafa Sibai, Cüneyd Parlayan, Pelin Tuğlu, Gürkan Öztürk, Turan Demircan
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-021-84909-z

Omics data integration identifies ELOVL7 and MMD gene regions as novel loci for adalimumab response in patients with Crohn’s disease
Cited by: 8
Author(s): Mario Gorenjak, Mateja Zupin, Gregor Jezernik, Pavel Skok, Uroš Potočnik
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0239919

The recurring impact of storm disturbance on black sea bass (Centropristis striata) movement behaviors in the Mid-Atlantic Bight
Cited by: 3
Author(s): Caroline J. Wiernicki, Michael H. P. O’Brien, Fan Zhang, Vyacheslav Lyubchich, Ming Li, David H. Secor
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0158259

Extensive Transcriptomic and Genomic Analysis Provides New Insights about Luminal Breast Cancers
Cited by: 15
Author(s): Inna Tishchenko, Heloisa Helena Milioli, Carlos Riveros, Pablo Moscato
Software Mentions: 9
Published: about 10 years ago

10.1038/s41598-019-49519-w

Recent decline in vegetative regeneration of bamboo (Yushania alpina), a key food plant for primates in Volcanoes National Park, Rwanda
Cited by: 8
Author(s): Yntze van der Hoek, Emmanuel Faida, Winnie Eckardt, Innocent Kwizera, Mia A. Derhé, Damien Caillaud, Tara S. Stoinski, Deogratias Tuyisingize
Software Mentions: 9
Published: almost 7 years ago

10.3389/fninf.2017.00062

Semi-automated Anatomical Labeling and Inter-subject Warping of High-Density Intracranial Recording Electrodes in Electrocorticography
Cited by: 78
Author(s): Liberty S. Hamilton, David L. Chang, Morgan B. Lee, Edward F. Chang
Software Mentions: 9
Published: over 8 years ago

10.15252/msb.20209819

Phosphoproteomics identifies microglial Siglec‐F inflammatory response during neurodegeneration
Cited by: 17
Author(s): Nader Morshed, William T. Ralvenius, Alexi Nott, L. Ashley Watson, Felicia H. Rodriguez, Leyla Anne Akay, Brian A. Joughin, Ping‐Chieh Pao, Jay Penney, Lauren M. LaRocque, Diego Mastroeni, Li Huei Tsai, Forest M. White
Software Mentions: 9
Published: over 5 years ago

10.3389/fmicb.2018.02711

Land-Use Intensity Rather Than Plant Functional Identity Shapes Bacterial and Fungal Rhizosphere Communities
Cited by: 45
Author(s): Ricardo Schöps, Kezia Goldmann, Katharina Herz, Guillaume Lentendu, Ingo Schöning, Helge Bruelheide, Tesfaye Wubet, François Buscot
Software Mentions: 9
Published: over 7 years ago

10.1111/evo.13072

Niche divergence facilitated by fine‐scale ecological partitioning in a recent cichlid fish adaptive radiation
Cited by: 37
Author(s): Antonia G. P. Ford, Lukas Rüber, Jason Newton, Kanchon K. Dasmahapatra, J.D. Balarin, Kristoffer Bruun, Julia J. Day
Software Mentions: 9
Published: over 9 years ago

10.1186/1471-2105-13-136

Down-weighting overlapping genes improves gene set analysis
Cited by: 120
Author(s): Adi L. Tarca, Sorin Drăghici, Gaurav Bhatti, Roberto Romero
Software Mentions: 9
Published: about 14 years ago

10.3389/fgene.2020.570325

Construction of a Nomogram Based on a Hypoxia-Related lncRNA Signature to Improve the Prediction of Gastric Cancer Prognosis
Cited by: 29
Author(s): Qian Chen, Lang Hu, Kaihua Chen
Software Mentions: 9
Published: over 5 years ago

10.1002/ece3.5070

Next‐generation phylogeography of the cockleCerastoderma glaucum: Highly heterogeneous genetic differentiation in a lagoon species
Cited by: 10
Author(s): Ludmila Sromek, Didier Forcioli, Rafał Lasota, Paola Furla, Maciej Wołowicz
Software Mentions: 9
Published: about 7 years ago

10.3389/fninf.2021.561689

QDECR: A Flexible, Extensible Vertex-Wise Analysis Framework in R
Cited by: 13
Author(s): Sander Lamballais, Ryan L. Muetzel
Software Mentions: 9
Published: about 5 years ago

10.1186/s12867-018-0111-x

Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosis
Cited by: 4
Author(s): Paola M. Boggiatto, Daniel Fitzsimmons, Darrell O. Bayles, David P. Alt, Catherine E. Vrentas, Steven C. Olsen
Software Mentions: 9
Published: almost 8 years ago

10.1186/s12864-018-5092-0

High-throughput proteomic profiling of the fish liver following bacterial infection
Cited by: 58
Author(s): Dwight R. Causey, Moritz A N Pohl, David Stead, Samuel Martín, Christopher J. Secombes, Daniel J. Macqueen
Software Mentions: 9
Published: over 7 years ago

10.1002/ece3.6079

Species specificity and intraspecific variation in the chemical profiles of Heliconius butterflies across a large geographic range
Cited by: 28
Author(s): Kathy Darragh, Gabriela Montejo‐Kovacevich, Krzysztof M. Kozak, Colin R. Morrison, Clarisse M. É. Figueiredo, Jonathan Stuart Ready, Camilo Salazar, Mauricio Linares, Kelsey J. R. P. Byers, Richard M. Merrill, W. Owen McMillan, Stefan Schulz, Chris D. Jiggins
Software Mentions: 9
Published: about 6 years ago

10.1371/journal.pntd.0000452

Genetic Diversity of the Cestode Echinococcus multilocularis in Red Foxes at a Continental Scale in Europe
Cited by: 71
Author(s): Jenny Knapp, Jean-Mathieu Bart, Patrick Giraudoux, Marie-Louise Glowatzki, Isabelle Breyer, Francis Raoul, Peter Deplazes, Georg Gerhard Duscher, Karel Martínek, P. Dubinský, Marie-Hélène Guislain, Florence Cliquet, Thomas Römig, A Malczewski, Bruno Gottstein, Renaud Piarroux
Software Mentions: 9
Published: about 17 years ago

10.7717/peerj.3580

The influence of mortality and socioeconomic status on risk and delayed rewards: a replication with British participants
Cited by: 14
Author(s): Gillian Pepper, Deirdre Corby, Rachel Bamber, Holly Smith, Nicky Wong, Daniel Nettle
Software Mentions: 9
Published: almost 9 years ago

10.18632/aging.202956

Gene expression profiles for an immunoscore model in bone and soft tissue sarcoma
Cited by: 5
Author(s): Jingyuan Fan, Xinyi Qin, Rong‐Quan He, Jie Ma, Qingjun Wei
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pone.0071476

Sleepless in Town – Drivers of the Temporal Shift in Dawn Song in Urban European Blackbirds
Cited by: 90
Author(s): Anja Nordt, Reinhard Klenke
Software Mentions: 9
Published: almost 13 years ago

10.1186/s12974-018-1113-9

Epigenetic impacts of stress priming of the neuroinflammatory response to sarin surrogate in mice: a model of Gulf War illness
Cited by: 45
Author(s): David G. Ashbrook, Benjamin Hing, Lindsay T. Michalovicz, Kimberly A. Kelly, Julie V. Miller, Wilfred C. de Vega, Diane B. Miller, Gordon Broderick, James P. O’Callaghan, Patrick O. McGowan
Software Mentions: 9
Published: over 8 years ago

10.1002/pan3.10218

Urban green space use during a time of stress: A case study during the COVID‐19 pandemic in Brisbane, Australia
Cited by: 103
Author(s): Violeta Berdejo‐Espinola, Andrés Felipe Suárez‐Castro, Tatsuya Amano, Kelly S. Fielding, Rachel Rui Ying Oh, Richard A. Fuller
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pone.0122717

Risk Factors for Whole Carcass Condemnations in the Swiss Slaughter Cattle Population
Cited by: 6
Author(s): Flavie Vial, Sara Schärrer, Martin Reist
Software Mentions: 9
Published: about 11 years ago

10.1186/s12886-016-0335-9

Systemic confounders affecting serum measurements of omega-3 and -6 polyunsaturated fatty acids in patients with retinal disease
Cited by: 5
Author(s): Anima Bühler, Felicitas Bucher, Michael Augustynik, Jan Wöhrl, Gottfried Martin, Günther Schlunck, Hansjürgen Agostini, Daniel Böhringer, Gerhard Pütz, Andreas Stahl
Software Mentions: 9
Published: almost 10 years ago

10.1371/journal.pcbi.1008982

Predicting mean ribosome load for 5’UTR of any length using deep learning
Cited by: 14
Author(s): Alexander Karollus, Žiga Avsec, Julien Gagneur
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pone.0241025

Genome-wide SNP analysis to assess the genetic population structure and diversity of Acrocomia species
Cited by: 13
Author(s): Brenda Gabriela Diaz, Maria Imaculada Zucchi, Alessandro Alves‐Pereira, Caléo Panhoca de Almeida, Aline Costa Lima Moraes, Suelen Alves Vianna, Joaquim Adelino de Azevedo-Filho, Carlos Augusto Colombo
Software Mentions: 9
Published: almost 5 years ago

10.1186/1471-2105-8-221

Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts
Cited by: 156
Author(s): Joern Toedling, Oleg Sklyar, Wolfgang Huber
Software Mentions: 9
Published: almost 19 years ago

10.1186/s12859-020-03667-3

Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets
Cited by: 49
Author(s): Yi Yue, Hao Huang, Qi Zhao, Huimin Dou, Xinyi Liu, Tian-Fei Han, Yue Chen, Xiangjun Song, Youhua Zhang, Jing Tu
Software Mentions: 9
Published: almost 6 years ago

10.1038/s41598-021-91205-3

Diurnal preference and depressive symptomatology: a meta-analysis
Cited by: 22
Author(s): Ray Norbury
Software Mentions: 9
Published: about 5 years ago

10.3389/fnana.2018.00010

Cerebral Artery Diameter in Inbred Mice Varies as a Function of Strain
Cited by: 23
Author(s): Baogang Qian, Robert F. Rudy, Tianxi Cai, Rose Du
Software Mentions: 9
Published: over 8 years ago

10.3389/fphar.2020.607287

Netosis and Inflammasomes in Large Vessel Occlusion Thrombi
Cited by: 18
Author(s): Stephanie H. Chen, Xavier O. Scott, Yoandy Ferrer Marcelo, Vania W. Almeida, Patricia Blackwelder, Dileep R. Yavagal, Eric C. Peterson, Robert M. Starke, W. Dalton Dietrich, Robert W. Keane, Juan Pablo de Rivero Vaccari
Software Mentions: 9
Published: over 5 years ago

10.7554/eLife.34058

A transcriptomics resource reveals a transcriptional transition during ordered sarcomere morphogenesis in flight muscle
Cited by: 63
Author(s): Maria L. Spletter, Christiane Barz, Assa Yeroslaviz, Xu Zhang, Sandra B. Lemke, Adrien Bonnard, Erich Brunner, Giovanni Cardone, Konrad Basler, Bianca Habermann, Frank Schnorrer
Software Mentions: 9
Published: about 8 years ago

10.3390/s20051500

Towards IoT-Aided Human–Robot Interaction Using NEP and ROS: A Platform-Independent, Accessible and Distributed Approach
Cited by: 15
Author(s): Enrique Coronado, Gentiane Venture
Software Mentions: 9
Published: over 6 years ago

10.1371/journal.pone.0226069

Short-term treatment with a peroxisome proliferator-activated receptor α agonist influences plasma one-carbon metabolites and B-vitamin status in rats
Cited by: 3
Author(s): Vegard Lysne, Bodil Bjørndal, Mari Lausund Grinna, Øivind Midttun, Per Magne Ueland, Rolf K. Berge, Jutta Dierkes, Ottar Nygård, Elin Strand
Software Mentions: 9
Published: over 6 years ago