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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12915-018-0518-3

https://doi.org/10.1186/s12915-018-0518-3

Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3

Cited by: 21
Author(s): Angelika Schmidt, Francesco Marabita, Narsis A. Kiani, Catharina C. Groß, Henrik J. Johansson, Szabolcs Éliás, Sini Rautio, Matilda Eriksson, Sunjay Jude Fernandes, Gilad Silberberg, Ubaid Ullah, Urvashi Bhatia, Harri Lähdesmäki, Janne Lehtiö, David Gomez-Cabrero, Heinz Wiendl, Riitta Lahesmaa, Jesper Tegnér
Published: about 7 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
Very Likely Science (100)
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
Very Likely Science (90)
bioconductor: maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Papers that mentioned: 119
Very Likely Science (100)
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
Very Likely Science (100)
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
Very Likely Science (93)
cran: mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
Papers that mentioned: 297
Very Likely Science (85)
cran: treemap
Treemap Visualization
Papers that mentioned: 31
Very Likely Science (85)
pypi: treemap
Treemap creator with interactive viewer - now with display of .coverage files
Papers that mentioned: 31
Very Likely Science (65)