Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12915-018-0518-3

https://doi.org/10.1186/s12915-018-0518-3

Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3

Cited by: 21
Author(s): Angelika Schmidt, Francesco Marabita, Narsis A. Kiani, Catharina C. Groß, Henrik J. Johansson, Szabolcs Éliás, Sini Rautio, Matilda Eriksson, Sunjay Jude Fernandes, Gilad Silberberg, Ubaid Ullah, Urvashi Bhatia, Harri Lähdesmäki, Janne Lehtiö, David Gomez-Cabrero, Heinz Wiendl, Riitta Lahesmaa, Jesper Tegnér
Published: over 6 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Papers that mentioned: 119
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
cran: mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
Papers that mentioned: 297
cran: treemap
Treemap Visualization
Papers that mentioned: 31
pypi: treemap
Treemap creator with interactive viewer - now with display of .coverage files
Papers that mentioned: 31