Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-020-1935-5
https://doi.org/10.1186/s13059-020-1935-5
Opportunities and challenges in long-read sequencing data analysis
Cited by: 1,295
Author(s): Shanika L. Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E. Ritchie, Quentin Gouil
Published: almost 5 years ago
Software Mentions 9
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqPapers that mentioned: 17
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
pypi: ccs
Crypto currencies stocks (ccs) is Python package for communication with stocks which are traiding with crypto currencies. Documentation is placed http://cryptocurrenciesstocks.readthedocs.ioPapers that mentioned: 18
pypi: IsoCon
Pipeline for obtaining non-redundant haplotype specific transcript isoforms using PacBio IsoSeq reads.Papers that mentioned: 4