Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: TULIP
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/TULIP
A Toolbox for Linear Discriminant Analysis with Penalties
3 versions
Latest release: almost 4 years ago
117 downloads last month
Papers Mentioning TULIP 20
10.1186/s13059-020-1935-5
Opportunities and challenges in long-read sequencing data analysisCited by: 1,295
Author(s): Shanika L. Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E. Ritchie, Quentin Gouil
Software Mentions: 9
Published: over 4 years ago
10.12688/f1000research.11146.2
De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencingCited by: 5
Author(s): Michael Liem, Hans J. Jansen, Ron P. Dirks, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J.L.F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt, Herman P. Spaink
Software Mentions: 4
Published: about 6 years ago
10.12688/f1000research.12012.2
The long reads ahead: de novo genome assembly using the MinIONCited by: 39
Author(s): Carlos de Lannoy, Dick de Ridder, Judith Risse
Software Mentions: 2
Published: almost 7 years ago
10.1186/1471-2350-9-100
SIRT1 genetic variants associate with the metabolic response of Caucasians to a controlled lifestyle intervention – the TULIP StudyCited by: 38
Author(s): Peter Weyrich, Fausto Machicao, Julia Reinhardt, Jürgen Machann, Fritz Schick, Otto Tschritter, Norbert Stefan, Andreas Fritsche, Hans‐Ulrich Häring
Software Mentions: 1
Published: almost 16 years ago
10.1093/bioinformatics/bty102
MetaboCraft: building a Minecraft plugin for metabolomicsCited by: 3
Author(s): Anargyros Megalios, Rónán Daly, Karl Burgess
Software Mentions: 1
Published: over 6 years ago
10.1186/1475-2875-5-110
Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?Cited by: 23
Author(s): Lyn‐Marié Birkholtz, Olivier Bastien, GA Wells, Delphine Grando, Fourie Joubert, Vinod Kasam, Marc Zimmermann, Philippe Ortet, Nicolas Jacq, Nadia Saïdani, Sylvaine Roy, Martin Hofmann‐Apitius, Vincent Breton, Abraham I. Louw, Éric Maréchal
Software Mentions: 1
Published: almost 18 years ago
10.1371/journal.pone.0023784
The Cyst-Dividing Bacterium Ramlibacter tataouinensis TTB310 Genome Reveals a Well-Stocked Toolbox for Adaptation to a Desert EnvironmentCited by: 35
Author(s): Gilles De Luca, Mohamed Barakat, Philippe Ortet, Sylvain Fochesato, Cécile Jourlin-Castelli, Mireille Ansaldi, Béatrice Py, Gwennaële Fichant, Pedro M. Coutinho, Romé Voulhoux, Olivier Bastien, Éric Maréchal, Bernard Henrissat, Yves Quentin, Philippe Naveilhan, Alain Filloux, Vincent Méjean, Michael S. DuBow, Frédéric Barras, Valérie Barbe, Jean Weissenbach, I. Mihalcescu, André Vermeglio, Wafa Achouak, Thierry Heulin
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0092238
Impact of the Adipokine Adiponectin and the Hepatokine Fetuin-A on the Development of Type 2 Diabetes: Prospective Cohort- and Cross-Sectional Phenotyping StudiesCited by: 59
Author(s): Norbert Stefan, Qi Sun, Andreas Fritsche, Jürgen Machann, Fritz Schick, Felicia Gerst, Charlotte Jeppesen, Hans‐Georg Joost, Heiner Boeing, Susanne Ullrich, Hans‐Ulrich Häring
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0013980
The D299G/T399I Toll-Like Receptor 4 Variant Associates with Body and Liver Fat: Results from the TULIP and METSIM StudiesCited by: 27
Author(s): Peter Weyrich, Harald Staiger, Alena Stančáková, Fausto Machicao, Jürgen Machann, Fritz Schick, Norbert Stefan, Johanna Kuusisto, Markku Laakso, Silke Schäfer, Andreas Fritsche, Hans‐Ulrich Häring
Software Mentions: 1
Published: almost 14 years ago
10.3389/fchem.2019.00802
TULIP2: An Improved Method for the Identification of Ubiquitin E3-Specific TargetsCited by: 15
Author(s): Daniel Salas-Lloret, Giulia Agabitini, Román González-Prieto
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmolb.2015.00030
Photoreceptor engineeringCited by: 94
Author(s): Thea Ziegler, Andreas Möglich
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-017-07650-6
Rapid de novo assembly of the European eel genome from nanopore sequencing readsCited by: 89
Author(s): Hans J. Jansen, Michael Liem, Susanne Jong-Raadsen, Sylvie Dufour, Finn‐Arne Weltzien, William Swinkels, Alex Koelewijn, Arjan P. Palstra, Bernd Pelster, Herman P. Spaink, Guido E. van den Thillart, Ron P. Dirks, Christiaan V. Henkel
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-019-44275-3
Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing readsCited by: 1
Author(s): Hans J. Jansen, Michael Liem, Susanne Jong-Raadsen, Sylvie Dufour, Finn‐Arne Weltzien, William Swinkels, Alex Koelewijn, Arjan P. Palstra, Bernd Pelster, Herman P. Spaink, Guido E. van den Thillart, Ron P. Dirks, Christiaan V. Henkel
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-68791-9
Molecular characterization and gene expression modulation of the alternative oxidase in a scuticociliate parasite by hypoxia and mitochondrial respiration inhibitorsCited by: 5
Author(s): I. Folgueira, Jesús Lamas, Rosa Ana Sueiro, J. Leiro
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-88102-0
Molecular characterization and transcriptional regulation of two types of H+-pyrophosphatases in the scuticociliate parasite Philasterides dicentrarchiCited by: 1
Author(s): I. Folgueira, Jesús Lamas, Rosa Ana Sueiro, J. Leiro
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-91260-w
Evolutionary history expands the range of signaling interactions in hybrid multikinase networksCited by: 1
Author(s): Philippe Ortet, Sylvain Fochesato, Anne-Florence Bitbol, David E. Whitworth, David Lalaouna, Catherine Santaella, Thierry Heulin, Wafa Achouak, Mohamed Barakat
Software Mentions: 1
Published: over 3 years ago
10.1186/s13015-021-00186-5
LazyB: fast and cheap genome assemblyCited by: 4
Author(s): Thomas Gatter, Sarah von Löhneysen, Jörg Fallmann, Polina Drozdova, Tom Hartmann, Peter F. Stadler
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.26722
Cell cycle entry triggers a switch between two modes of Cdc42 activation during yeast polarizationCited by: 60
Author(s): Kristen L Witte, Devin Strickland, Michael Glotzer
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2105-6-49
Cited by: 25Author(s): Olivier Bastien, Philippe Ortet, Sylvaine Roy, Éric Maréchal
Software Mentions: 1
Published: almost 20 years ago
10.1186/1471-2350-10-77
Common polymorphisms within the NR4A3 locus, encoding the orphan nuclear receptor Nor-1, are associated with enhanced β-cell function in non-diabetic subjectsCited by: 24
Author(s): Peter Weyrich, Harald Staiger, Alena Stančáková, Silke Schäfer, Kerstin Kirchhoff, Susanne Ullrich, Felicia Ranta, Baptist Gallwitz, Norbert Stefan, Fausto Machicao, Johanna Kuusisto, Markku Laakso, Andreas Fritsche, Hans‐Ulrich Häring
Software Mentions: 1
Published: about 15 years ago