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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: IsoCon

https://packages.ecosyste.ms/registries/pypi.org/packages/IsoCon

Pipeline for obtaining non-redundant haplotype specific transcript isoforms using PacBio IsoSeq reads.
6 versions
Latest release: over 5 years ago
41 downloads last month

Enhanced Analysis
Educational Contributors: [email protected]
Repository Activity:
Repository Owner: Kristoffer (user)
README Analysis:
Science Score: 91/100
Starting Score: 100 points
Bonuses:
  • +20 Educational commit emails
    1 contributors with educational email addresses
  • +10 Science terms in README
    5 scientific terms found in README
  • +6 Academic links
    1 academic links found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (91)

Papers Mentioning IsoCon 4

10.1186/s13059-020-1935-5
Opportunities and challenges in long-read sequencing data analysis
Cited by: 1,295
Author(s): Shanika L. Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E. Ritchie, Quentin Gouil
Software Mentions: 9
Published: over 5 years ago
10.3389/fgene.2019.00654
The Impact of cDNA Normalization on Long-Read Sequencing of a Complex Transcriptome
Cited by: 5
Author(s): Nam V. Hoang, Agnelo Furtado, Virginie Perlo, Frederik C. Botha, Robert J. Henry
Software Mentions: 8
Published: about 6 years ago
10.3390/microorganisms8010008
Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont
Cited by: 22
Author(s): Monica M. Sheffer, Gabriele Uhl, Stefan Prost, Tillmann Lueders, Tim Urich, Mia M. Bengtsson
Software Mentions: 4
Published: over 5 years ago
10.1186/s12983-020-00355-z
Full-length transcriptome sequencing and comparative transcriptomic analysis to uncover genes involved in early gametogenesis in the gonads of Amur sturgeon (Acipenser schrenckii)
Cited by: 17
Author(s): Xiujuan Zhang, Jiabin Zhou, Linmiao Li, Wumeng Huang, Hafiz Ishfaq Ahmad, Huiming Li, Haiying Jiang, Jinping Chen
Software Mentions: 2
Published: over 5 years ago